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At least 1,693 records · Page 94

SBbadger: biochemical reaction networks with definable degree distributions

Abstract Motivation An essential step in developing computational tools for the inference, optimization and simulation of biochemical reaction networks is gauging tool performance against earlier efforts using an appropriate set of benchmarks. General strategies for the assembly of benchmark models include collection from the literature, creation via subnetwork extraction and de novo generation. However, with respect to biochemical reaction networks, these approaches and their associated tools are either poorly suited to generate models that reflect the wide range of properties found in natural biochemical networks or to do so in numbers that enable rigorous statistical analysis. Results In this work, we present SBbadger, a python-based software tool for the generation of synthetic biochemical reaction or metabolic networks with user-defined degree distributions, multiple available kinetic formalisms and a host of other definable properties. SBbadger thus enables the creation of benchmark model sets that reflect properties of biological systems and generate the kinetics and model structures typically targeted by computational analysis and inference software. Here, we detail the computational and algorithmic workflow of SBbadger, demonstrate its performance under various settings, provide sample outputs and compare it to currently available biochemical reaction network generation software. Availability and implementation SBbadger is implemented in Python and is freely available at https://github.com/sys-bio/SBbadger and via PyPI at https://pypi.org/project/SBbadger/. Documentation can be found at https://SBbadger.readthedocs.io. Supplementary information Supplementary data are available at Bioinformatics online.

59 BASIC BIOLOGICAL SCIENCES↗

Interactive computation of radiation view factors

The development of a pair of computer programs to calculate the radiation exchange view factors is described. The surface generation program is based upon current graphics capabilities and includes special provisions which are unique to the radiation problem. The calculational program uses a combination of contour and double area integration to permit consideration of radiation with obstruction surfaces. Examples of the surface generation and the calculation are given.

Emery, A. F.↗

Rotating rake design for unique measurement of fan-generated spinning acoustic modes

In light of the current emphasis on noise reduction in subsonic aircraft design, NASA has been actively studying the source of and propagation of noise generated by subsonic fan engines. NASA/LeRC has developed and tested a unique method of accurately measuring these spinning acoustic modes generated by an experimental fan. This mode measuring method is based on the use of a rotating microphone rake. Testing was conducted in the 9 x 15 Low-speed Wind Tunnel. The rotating rake was tested with the Advanced Ducted Propeller (ADP) model. This memorandum discusses the design and performance of the motor/drive system for the fan-synchronized rotating acoustic rake. This novel motor/drive design approach is now being adapted for additional acoustic mode studies in new test rigs as baseline data for the future design of active noise control for subsonic fan engines. Included in this memorandum are the research requirements, motor/drive specifications, test performance results, and a description of the controls and software involved.

Konno, Kevin E.↗

Gradient Field Imploding Liner Fusion Propulsion System

Magneto-inertial fusion concepts often use a pulsed high current discharge in a cylindrical coil to generate a rapidly changing axial magnetic field, inducing a counter-propagating current in the conducting outer liner of a centrally aligned cylindrical fusion target. The Lorentz force arising from the axial field and azimuthal liner current rapidly implodes the target radially inward, compressing the fuel to reach fusion conditions.

Exploration↗

Ambipolar diffusion in the middle atmosphere

In the middle atmosphere above 60 km, the electron concentration increases with altitude, reaching values of 10 to the 10th per cu m in the daytime ionospheric E region near 100 km. The electrons are more mobile than the ions and diffuse more rapidly through the neutral atmosphere. The electron diffusion polarizes the medium, causing an electric field to develop that acts to retard the electron diffusion and enhance the conduction current of ions. A global zonally averaged numerical model of atmosheric electricity from the ground to 100 km is used to examine the effect of ambipolar diffusion and the earth's geomagnetic field on the currents and fields in the middle atmosphere. The results show that above about 65 km, ambipolar diffusion generates local electric fields and conduction currents that balance electron diffusion currents. The electric fields and conduction currents are a few orders of magnitude larger than the vertical fields and currents calculated from the downward mapping of the ionospheric potential without taking electron diffusion into account. Ambipolar diffusion does not alter the total current flowing in the global circuit. It is a local effect where enhanced conduction currens flow to balance the electron diffusion current.

Tzur, I.↗

System and method for responding to ground and flight system malfunctions

A system for on-board anomaly resolution for a vehicle has a data repository. The data repository stores data related to different systems, subsystems, and components of the vehicle. The data stored is encoded in a tree-based structure. A query engine is coupled to the data repository. The query engine provides a user and automated interface and provides contextual query to the data repository. An inference engine is coupled to the query engine. The inference engine compares current anomaly data to contextual data stored in the data repository using inference rules. The inference engine generates a potential solution to the current anomaly by referencing the data stored in the data repository.

Fussell, Ronald M.↗

Characteristics of electromagnetic interference generated by arc discharges

Electromagnetic interference (EMI) signatures resulting from arc discharges are characterized, and the effects of electrostatic discharges (ESDs) on the design of spacecraft systems are investigated. EMI characterization experiments were performed on Mylar, Teflon, Kapton, fused silica, and fiberglass in a vacuum chamber with acrylic walls; the experimental design and procedures are described. Discharge current pulses and RF spectra generated by the sample materials are examined. The relation between the magnitude of EMI generated during an ESD event and the material, environment, and geometry is studied. The solar-array/plasma interaction is analyzed; particular attention is given to the rate of discharge as a function of plasma density. The physical mechanisms of ESD-generated EMI are discussed. The data reveal that ESD parameters are dependent on the test environment.

Leung, Philip↗

Design and Fabrication of a Stirling Thermal Vacuum Test

A Stirling Radioisotope Generator (SRG110) is being developed for potential use on future NASA space science missions. The development effort is being conducted by Lockheed Martin under contract to the Department of Energy (DOE). The Stirling Technology Company supplies the free-piston Stirling power convertors, and NASA Glenn Research Center (GRC) provides support to the effort in a range of technologies. This generator features higher efficiency and specific power compared to the currently used alternatives. One potential application for the generator would entail significant cruise time in the vacuum of deep space. A test has been conceived at GRC to demonstrate functionality of the Stirling convertors in a thermal vacuum environment. The test article resembles the configuration of the SRG, however the requirement for low mass was not considered. This test will demonstrate the operation of the Stirling convertors in the thermal vacuum environment, simulating deep space, over an extended period of operation. The analysis, design, and fabrication of the test article will be described in this paper.

Oriti, Salvatore M.↗

Design and Fabrication of a Stirling Thermal Vacuum Test

A Stirling Radioisotope Generator (SRG110) is being developed for potential use on future NASA space science missions. The development effort is being conducted by Lockheed Martin under contract to the Department of Energy (DOE). The Stirling Technology Company supplies the free-piston Stirling power convertors, and NASA Glenn Research Center (GRC) provides support to the effort in a range of technologies. This generator features higher efficiency and specific power compared to the currently used alternatives. One potential application for the generator would entail significant cruise time in the vacuum of deep space. A test has been conceived at GRC to demonstrate functionality of the Stirling convertors in a thermal vacuum environment. The test article resembles the configuration of the SRG, however the requirement for low mass was not considered. This test will demonstrate the operation of the Stirling convertors in the thermal vacuum environment, simulating deep space, over an extended period of operation. The analysis, design, and fabrication of the test article will be described in this paper.

Oriti, Salvatore M.↗

Thermoelectronic laser energy conversion for power transmission in space

Long distance transmission of power in space by means of laser beams is an attractive concept because of the very narrow beam divergence. Such a system requires efficient means to both generate the laser beam and to convert the light energy in the beam into useful electric output at the receiver. A plasma-type device known as a Thermo-Electronic Laser Energy Converter (TELEC) has been studied as a method of converting a 10.6 micron CO2 laser beam into electric power. In the TELEC process, electromagnetic radiation is absorbed directly in the plasma electrons producing a high electron temperature. The energetic electrons diffuse out of the plasma striking two electrodes with different areas. Since more electrons are collected by the larger electrode there is a net transport of current, and an EMF is generated in the external circuit. The smaller electrode functions as an electron emitter to provide continuity of the current. Waste heat is rejected from the large electrode. A design for a TELEC system with an input 1 MW laser beam was developed as part of the study. The calculated performance of the system showed an overall efficiency of about 42%.

Britt, E. J.↗

Monitoring aromatic ring-currents in Mg-porphyrin by time-resolved circular dichroism

We report time-resolved circular dichroism signals (TRCD) in the X-ray regime can directly probe the magnitude and the direction of ring currents in molecules. The electronic ring currents in Mg-porphyrin, generated by a coherent superposition of electronic states induced by a circularly polarized UV pulse, are tracked by a time-delayed circularly polarized attosecond X-ray pulse. The signals are calculated using the minimal coupling Hamiltonian, which directly makes use of transition current densities. The TRCD signals obtained from the left and right circularly polarized light pump have opposite signs, revealing the direction of the ring current. Molecular aromaticity and its role in photochemical reactions such as ring opening or closure can be studied using this technique.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

SUPERball: Exploring Tensegrities for Planetary Probes

The Dynamic Tensegrity Robotics Lab (DTRL) at NASA Ames Research Center is developing a compliant and distributed tensegrity robotic platform for planetary exploration. Working in collaboration with Ghent University, the DTRL built an untethered prototype robot, the SUPERball. In this work, multiple issues with the current SUPERball design are addressed, when considering an example mission to Titan. Specifically, engineering requirements for the mission are empirically validated, and the current design is extended under these requirements to meet expanded goals.Survival of impact forces under entry, descent, and landing are verified with a physical experiment performed in collaboration with the University of Idaho. Then, concepts for a fully-actuated redesign of SUPERball are generated, compared, and validated against current engineering requirements. This exploratory work moves the SUPERball project toward an eventual flight-ready design.\

Tensegrity↗

A Voltage Injection-Based Current Harmonics Suppression Strategy for Six-Phase PMSM With Nonsinusoidal Back EMF

This article presents a voltage injection-based current harmonic minimization method for wide bandgap device-based six-phase permanent magnet synchronous machine (PMSM) drives. The presence of low-order harmonics is common in the back EMF of PMSMs with low slot and high pole numbers. The back EMF harmonics generate low-order harmonic currents that increase torque ripples. Furthermore, zero-sequence current (ZSC) is also observed if all six phases are connected to a common neutral point. ZSC does not affect the torque ripple but reduces the system efficiency. A special technique is required to reduce ZSC for variable speed drives as direct ac component to synchronous reference frame (SRF) dc transformation is not possible for ZSC. In this article, a voltage injection-based current harmonics reduction method is proposed. The injected harmonic voltage coefficients are calculated from the harmonic estimations of back EMF and updated using closed-loop harmonic compensators to improve steady-state performance. For ZSC reduction, third harmonics power controller, and for 6n ± 1 (n = 1, 2,...) order harmonic current reduction, SRF current controllers are presented in this article. Furthermore, the current harmonics minimization method is experimentally verified using a GaN-based three-level active neutral point clamped inverter-driven six-phase PMSM.

42 ENGINEERING↗

Field-aligned currents in the magnetospheric boundary layer

A self-consistent magnetopause-boundary layer model is constructed which contains two current layers, one for the magnetopause and one for the magnetosphere-boundary layer transition region. Field-aligned sheet currents in the boundary layer are generated by the plasma flow along the boundary layer. The magnitude of these boundary layer field-aligned currents is about 10 to the -8th A/sq m, which can be scaled along field lines to about 5 x 10 to the -6th A/sq m near the ionosphere and therefore can be identified as a possible source for the auroral sheet currents. The cross-field current density in the model is also about 10 to the -8th A/sq m, which is sufficient to excite the lower-hybrid-drift waves to produce the observed electromagnetic fluctuations in the magnetopause-boundary layer region.

Lee, L. C.↗

Cartesian based grid generation/adaptive mesh refinement

Grid adaptation has recently received attention in the computational fluid dynamics (CFD) community as a means to capture the salient features of a flowfield by either moving grid points of a structured or by adding cells in an unstructured manner. An approach based on a background cartesian mesh is investigated from which the geometry is 'cut' out of the mesh. Once the mesh is obtained, a solution on this coarse grid is found, that indicates which cells need to be refined. This process of refining/solving continues until the flow is grid refined in terms of a user specified global parameter (such as drag coefficient etc.). The advantages of this approach are twofold: the generation of the base grid is independent of the topology of the bodies or surfaces around/through which the flow is to be computed, and the resulting grid (in uncut regions) is highly isotropic, so that the truncation error is low. The flow solver (which, along with the grid generation is still under development) uses a completely unstructured data base, and is a finite volume, upwinding scheme. Current and future work will address generating Navier-Stokes suitable grids by using locally aligned and normal face/cell refining. The attached plot shows a simple grid about two turbine blades.

Coirier, William J.↗

From Rules to Reasoning: A Survey of Large Language Model-Based Approaches to Scientific Hypothesis and Idea Generation

Scientific hypothesis generation represents a fundamental challenge in contemporary research due to exponentially expanding literature volumes and increasing disciplinary specialization. Large language models (LLMs) have emerged as transformative tools for automated scientific discovery, moving beyond traditional rule-based and literature-mining approaches. Four paradigmatic approaches define current LLM-driven hypothesis generation: direct prompting and fine-tuning methods, knowledge-enhanced frameworks integrating retrieval-augmented generation (RAG), multi-agent collaborative systems simulating research teams, and reasoning-focused approaches implementing cognitive architectures. Domain-specific applications demonstrate statistical equivalence to human expert performance in social psychology, experimental validation in biomedical research, and near-expert quality in astronomy. Evaluation methodologies encompass human expert assessment, LLM-as-judge frameworks, and comprehensive benchmarking systems. Technical challenges include hallucination management, knowledge integration limitations, and balancing novelty with feasibility. Future directions emphasize hybrid neural-symbolic architectures and sophisticated human-AI collaboration models for responsible scientific discovery acceleration.

AI-driven discovery↗

Multi-Convertor Configurable Simulator for Dynamic Radioisotope Power Systems

This paper presents the multi-convertor configurable simulator (MCCS) that can emulate piston/displacer dynamics and power outputs of various types of free-piston Stirling convertors developed at NASA GRC, including Technical Demonstration Convertor (TDC), Advanced Stirling Convertor (ASC), Flexure Isotope Stirling Convertor (FISC), Sunpower Robust Stirling Convertor (SRSC), and P2A. The MCCS can emulate up to four convertors, instead of two convertors in state-of-the-art Stirling simulators, and the maximum power output for each convertor is 1kW. Furthermore, hardware and software changes required to switch between convertors are minimized for easy conversion. A hardware-in-loop (HIL) system is used to easily switch between convertors by updating linearized modeling parameters in software. Also, switched-mode AC power supplies are used to generate wide ranges of voltage and current to emulate different types of Stirling convertors without replacing AC power supplies. Finally, the inductors emulating the linear alternator, which is the only hardware change needed for conversion, are modularized in alternator boxes to enable easy replacement of the inductors. These two features—easy conversion and capability of emulating up to four 1kW-convertors—will enable the validation tests of multi-convertor controller (MCC) concepts that are being developed by APL, the Dynamic Radioisotope Power System (DRPS) generator, and other controller developments for current and future DRPS flight projects. Finally, the MCCS is configured to demonstrate emulation of four FISCs and the outputs of the MCCS are compared with experimental data from the actual FISC.

Free-Piston Stirling Convertor Controller↗

The Grid Value of Ocean Current Energy in Florida: Preprint

Ocean current technology has been proposed as a potential contributor to Florida's energy portfolio. There has been limited investigation of how this energy would be valued when integrated into the Florida electrical grid. This study assesses three future grid scenarios to evaluate the impact of adding ocean current to each. NREL's capacity expansion model, Resource Planning Model, is used to identify the least-cost generation mix through 2050, with and without ocean current. The first scenario, Business as Usual, Base case assuming current policies, ocean current does not replace fossil-based technologies. In the second scenario, we allow solar and storage to have lower costs than the first scenario which allows ocean current to retire gas earlier and more variable generation technologies to be deployed. In the third scenario, the Florida carbon constraint 95 by 2050 from 2020 levels case, ocean current can play a bigger role in decarbonization than the two other cases when coupled with other technologies.

capacity expansion model↗