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At least 1,693 records · Page 94
All sourcesNASA NTRSDOE OSTI
DOE OSTI2016

Non-targeted Metabolomics in Diverse Sorghum Breeding Lines Indicates Primary and Secondary Metabolite Profiles Are Associated with Plant Biomass Accumulation and Photosynthesis

Metabolomics is an emerging method to improve our understanding of how genetic diversity affects phenotypic variation in plants. Recent studies have demonstrated that genotype has a major influence on biochemical variation in several types of plant tissues, however, the association between metabolic variation and variation in morphological and physiological traits is largely unknown. Sorghum bicolor (L.) is an important food and fuel crop with extensive genetic and phenotypic variation. Sorghum lines have been bred for differing phenotypes beneficial for production of grain (food), stem sugar (food, fuel), and cellulosic biomass (forage, fuel), and these varying phenotypes are the end products of innate metabolic programming which determines how carbon is allocated during plant growth and development. Further, sorghum has been adapted among highly diverse environments. Because of this geographic and phenotypic variation, the sorghum metabolome is expected to be highly divergent; however, metabolite variation in sorghum has not been characterized. Here, we utilize a phenotypically diverse panel of sorghum breeding lines to identify associations between leaf metabolites and morpho-physiological traits. The panel (11 lines) exhibited significant variation for 21 morpho-physiological traits, as well as broader trends in variation by sorghum type (grain vs. biomass types). Variation was also observed for cell wall constituents (glucan, xylan, lignin, ash). Non-targeted metabolomics analysis of leaf tissue showed that 956 of 1181 metabolites varied among the lines (81%, ANOVA, FDR adjusted p < 0.05). Both univariate and multivariate analyses determined relationships between metabolites and morpho-physiological traits, and 384 metabolites correlated with at least one trait (32%, p < 0.05), including many secondary metabolites such as glycosylated flavonoids and chlorogenic acids. The use of metabolomics to explain relationships between two or more morpho-physiological traits was explored and showed chlorogenic and shikimic acid to be associated with photosynthesis, early plant growth and final biomass measures in sorghum. In conclusion, taken together, this study demonstrates the integration of metabolomics with morpho-physiological datasets to elucidate links between plant metabolism, growth, and architecture.

09 BIOMASS FUELS↗
DOE OSTI2021

Variation in Gene Expression between Two Sorghum bicolor Lines Differing in Innate Immunity Response

Microbe associated molecular pattern (MAMPs) triggered immunity (MTI) is a key component of the plant innate immunity response to microbial recognition. However, most of our current knowledge of MTI comes from model plants (i.e., Arabidopsis thaliana) with comparatively less work done using crop plants. In this work, we studied the MAMP triggered oxidative burst (ROS) and the transcriptional response in two Sorghum bicolor genotypes, BTx623 and SC155-14E. SC155-14E is a line that shows high anthracnose resistance and the line BTx623 is susceptible to anthracnose. Our results revealed a clear variation in gene expression and ROS in response to either flagellin (flg22) or chitin elicitation between the two lines. While the transcriptional response to each MAMP and in each line was unique there was a considerable degree of overlap, and we were able to define a core set of genes associated with the sorghum MAMP transcriptional response. The GO term and KEGG pathway enrichment analysis discovered more immunity and pathogen resistance related DEGs in MAMP treated SC155-14E samples than in BTx623 with the same treatment. The results provide a baseline for future studies to investigate innate immunity pathways in sorghum, including efforts to enhance disease resistance.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2016

INVISIBLE ACTIVE GALACTIC NUCLEI. II. RADIO MORPHOLOGIES AND FIVE NEW H i 21 cm ABSORPTION LINE DETECTORS

This is the second paper directed toward finding new highly redshifted atomic and molecular absorption lines at radio frequencies. To this end, we selected a sample of 80 candidates for obscured radio-loud active galactic nuclei (AGNs) and presented their basic optical/near-infrared (NIR) properties in Paper I. In this paper, we present both high-resolution radio continuum images for all of these sources and H i 21 cm absorption spectroscopy for a few selected sources in this sample. A-configuration 4.9 and 8.5 GHz Very Large Array continuum observations find that 52 sources are compact or have substantial compact components with size <0.″5 and flux densities >0.1 Jy at 4.9 GHz. The 36 most compact sources were then observed with the Very Long Baseline Array at 1.4 GHz. One definite and 10 candidate Compact Symmetric Objects (CSOs) are newly identified, which is a detection rate of CSOs ∼three times higher than the detection rate previously found in purely flux-limited samples. Based on possessing compact components with high flux densities, 60 of these sources are good candidates for absorption-line searches. Twenty-seven sources were observed for H i 21 cm absorption at their photometric or spectroscopic redshifts with only six detections (five definite and one tentative). However, five of these were from a small subset of six CSOs with pure galaxy optical/NIR spectra (i.e., any AGN emission is obscured) and for which accurate spectroscopic redshifts place the redshifted 21 cm line in a radio frequency intereference (RFI)-free spectral “window” (i.e., the percentage of H i 21 cm absorption-line detections could be as high as ∼90% in this sample). It is likely that the presence of ubiquitous RFI and the absence of accurate spectroscopic redshifts preclude H i detections in similar sources (only 1 detection out of the remaining 22 sources observed, 13 of which have only photometric redshifts); that is, H i absorption may well be present but is masked by the RFI. Future searches for highly redshifted H i and molecular absorption can easily find more distant CSOs among bright, “blank field” radio sources, but will be severely hampered by an inability to determine accurate spectroscopic redshifts due to their lack of rest-frame UV continuum.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2016

Constraining the dynamical importance of hot gas and radiation pressure in quasar outflows using emission line ratios

Quasar feedback models often predict an expanding hot gas bubble that drives a galaxy-scale outflow. In many circumstances this hot gas radiates inefficiently and is therefore difficult to observe directly. We present an indirect method to detect the presence of a hot bubble using hydrostatic photoionization calculations of the cold (∼10{sup 4} K) line-emitting gas. We compare our calculations with observations of the broad line region, the inner face of the torus, the narrow line region (NLR), and the extended NLR, and thus constrain the hot gas pressure at distances 0.1 pc--10 kpc from the center. We find that emission line ratios observed in the average quasar spectrum are consistent with radiation-pressure-dominated models on all scales. On scales <40 pc a dynamically significant hot gas pressure is ruled out, while on larger scales the hot gas pressure cannot exceed six times the local radiation pressure. In individual quasars, ≈25% of quasars exhibit NLR ratios that are inconsistent with radiation-pressure-dominated models, although in these objects the hot gas pressure is also unlikely to exceed the radiation pressure by an order of magnitude or more. The derived upper limits on the hot gas pressure imply that the instantaneous gas pressure force acting on galaxy-scale outflows falls short of the time-averaged force needed to explain the large momentum fluxes p-dot ≫L{sub AGN}/c inferred for galaxy-scale outflows. This apparent discrepancy can be reconciled if optical quasars previously experienced a buried, fully obscured phase during which the hot gas bubble was more effectively confined and during which galactic wind acceleration occurred.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2016

DUST ATTENUATION OF THE NEBULAR REGIONS OF z ∼ 2 STAR-FORMING GALAXIES: INSIGHT FROM UV, IR, AND EMISSION LINES

We use a sample of 149 spectroscopically confirmed UV-selected galaxies at z ∼ 2 to investigate the relative dust attenuation of the stellar continuum and the nebular emission lines. For each galaxy in the sample, at least one rest-frame optical emission line (Hα/[N ii] λ6583 or [O iii] λ5007) measurement has been taken from the litterature, and 41 galaxies have additional Spitzer/MIPS 24 μm observations that are used to infer infrared luminosities. We use a spectral energy distribution (SED) fitting code that predicts nebular line strengths when fitting the stellar populations of galaxies in our sample, and we perform comparisons between the predictions of our models and the observed/derived physical quantities. We find that on average our code is able to reproduce all the physical quantities (e.g., UV β slopes, infrared luminosities, emission line fluxes), but we need to apply a higher dust correction to the nebular emission compared to the stellar emission for the largest star formation rate (SFR) (log SFR/M{sub ⊙} yr{sup −1} > 1.82, Salpeter initial mass function). We find a correlation between SFR and the difference in nebular and stellar color excesses, which could resolve the discrepant results regarding nebular dust correction at z ∼ 2 from previous studies.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2016

Discovery of broad soft X-ray absorption lines from the quasar wind in PDS 456

High-resolution soft X-ray spectroscopy of the prototype accretion disk wind quasar, PDS 456, is presented. Here, the XMM-Newton reflection grating spectrometer spectra are analyzed from the large 2013–2014 XMM-Newton campaign, consisting of five observations of approximately 100 ks in length. During the last observation (OBS. E), the quasar is at a minimum flux level, and broad absorption line (BAL) profiles are revealed in the soft X-ray band, with typical velocity widths of σ{sub v}∼10,000 km s{sup −1}. During a period of higher flux in the third and fourth observations (OBS. C and D, respectively), a very broad absorption trough is also present above 1 keV. From fitting the absorption lines with models of photoionized absorption spectra, the inferred outflow velocities lie in the range ∼0.1--0.2c. The absorption lines likely originate from He and H-like neon and L-shell iron at these energies. A comparison with earlier archival data of PDS 456 also reveals a similar absorption structure near 1 keV in a 40 ks observation in 2001, and generally the absorption lines appear most apparent when the spectrum is more absorbed overall. The presence of the soft X-ray BALs is also independently confirmed by an analysis of the XMM-Newton EPIC spectra below 2 keV. We suggest that the soft X-ray absorption profiles could be associated with a lower ionization and possibly clumpy phase of the accretion disk wind, where the latter is known to be present in this quasar from its well-studied iron K absorption profile and where the wind velocity reaches a typical value of 0.3c.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2016

A MODEL FOR TYPE 2 CORONAL LINE FOREST (CLiF) AGNs

We present a model for the classification of Coronal Line Forest Active Galactic Nuclei (CLiF AGNs). CLiF AGNs are of special interest due to their remarkably large number of emission lines, especially forbidden high-ionization lines (FHILs). Rose et al. suggest that their emission is dominated by reflection from the inner wall of the obscuring region rather than direct emission from the accretion disk. This makes CLiF AGNs laboratories to test AGN-torus models. Modeling an AGN as an accreting supermassive black hole surrounded by a cylinder of dust and gas, we show a relationship between the viewing angle and the revealed area of the inner wall. From the revealed area, we can determine the amount of FHIL emission at various angles. We calculate the strength of [Fe vii] λ 6087 emission for a number of intermediate angles (30°, 40°, and 50°) and compare the results with the luminosity of the observed emission line from six known CLiF AGNs. We find that there is good agreement between our model and the observational results. The model also enables us to determine the relationship between the type 2:type 1 AGN fraction vs the ratio of torus height to radius, h / r .

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2016

EMISSION SIGNATURES FROM SUB-PARSEC BINARY SUPERMASSIVE BLACK HOLES. I. DIAGNOSTIC POWER OF BROAD EMISSION LINES

Motivated by advances in observational searches for sub-parsec supermassive black hole binaries (SBHBs) made in the past few years, we develop a semi-analytic model to describe spectral emission-line signatures of these systems. The goal of this study is to aid the interpretation of spectroscopic searches for binaries and to help test one of the leading models of binary accretion flows in the literature: SBHB in a circumbinary disk. In this work, we present the methodology and a comparison of the preliminary model with the data. We model SBHB accretion flows as a set of three accretion disks: two mini-disks that are gravitationally bound to the individual black holes and a circumbinary disk. Given a physically motivated parameter space occupied by sub-parsec SBHBs, we calculate a synthetic database of nearly 15 million broad optical emission-line profiles and explore the dependence of the profile shapes on characteristic properties of SBHBs. We find that the modeled profiles show distinct statistical properties as a function of the semimajor axis, mass ratio, eccentricity of the binary, and the degree of alignment of the triple disk system. This suggests that the broad emission-line profiles from SBHB systems can in principle be used to infer the distribution of these parameters and as such merit further investigation. Calculated profiles are more morphologically heterogeneous than the broad emission lines in observed SBHB candidates and we discuss improved treatment of radiative transfer effects, which will allow a direct statistical comparison of the two groups.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2016

POLARIZED LINE FORMATION WITH LOWER-LEVEL POLARIZATION AND PARTIAL FREQUENCY REDISTRIBUTION

In the well-established theories of polarized line formation with partial frequency redistribution (PRD) for a two-level and two-term atom, it is generally assumed that the lower level of the scattering transition is unpolarized. However, the existence of unexplained spectral features in some lines of the Second Solar Spectrum points toward a need to relax this assumption. There exists a density matrix theory that accounts for the polarization of all the atomic levels, but it is based on the flat-spectrum approximation (corresponding to complete frequency redistribution). In the present paper we propose a numerical algorithm to solve the problem of polarized line formation in magnetized media, which includes both the effects of PRD and the lower level polarization (LLP) for a two-level atom. First we derive a collisionless redistribution matrix that includes the combined effects of the PRD and the LLP. We then solve the relevant transfer equation using a two-stage approach. For illustration purposes, we consider two case studies in the non-magnetic regime, namely, the J {sub a} = 1, J {sub b} = 0 and J {sub a} = J {sub b} = 1, where J {sub a} and J {sub b} represent the total angular momentum quantum numbers of the lower and upper states, respectively. Our studies show that the effects of LLP are significant only in the line core. This leads us to propose a simplified numerical approach to solve the concerned radiative transfer problem.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2016

THE NATURE OF ACTIVE GALACTIC NUCLEI WITH VELOCITY OFFSET EMISSION LINES

We obtained Keck/OSIRIS near-IR adaptive optics-assisted integral-field spectroscopy to probe the morphology and kinematics of the ionized gas in four velocity-offset active galactic nuclei (AGNs) from the Sloan Digital Sky Survey. These objects possess optical emission lines that are offset in velocity from systemic as measured from stellar absorption features. At a resolution of ∼0.″18, OSIRIS allows us to distinguish which velocity offset emission lines are produced by the motion of an AGN in a dual supermassive black hole system, and which are produced by outflows or other kinematic structures. In three galaxies, J1018+2941, J1055+1520, and J1346+5228, the spectral offset of the emission lines is caused by AGN-driven outflows. In the remaining galaxy, J1117+6140, a counterrotating nuclear disk is observed that contains the peak of Pa α emission 0.″2 from the center of the galaxy. The most plausible explanation for the origin of this spatially and kinematically offset peak is that it is a region of enhanced Pa α emission located at the intersection zone between the nuclear disk and the bar of the galaxy. In all four objects, the peak of ionized gas emission is not spatially coincident with the center of the galaxy as traced by the peak of the near-IR continuum emission. The peaks of ionized gas emission are spatially offset from the galaxy centers by 0.″1–0.″4 (0.1–0.7 kpc). We find that the velocity offset originates at the location of this peak of emission, and the value of the offset can be directly measured in the velocity maps. The emission-line ratios of these four velocity-offset AGNs can be reproduced only with a mixture of shocks and AGN photoionization. Shocks provide a natural explanation for the origin of the spatially and spectrally offset peaks of ionized gas emission in these galaxies.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2016

THE COMPLEX CIRCUMNUCLEAR ENVIRONMENT OF THE BROAD-LINE RADIO GALAXY 3C 390.3 REVEALED BY CHANDRA HETG

We present the first high spectral resolution X-ray observation of the broad-line radio galaxy 3C 390.3 obtained with the high-energy transmission grating spectrometer on board the Chandra X-ray Observatory . The spectrum shows complex emission and absorption features in both the soft X-rays and Fe K band. We detect emission and absorption lines in the energy range E = 700–1000 eV associated with ionized Fe L transitions (Fe XVII–XX). An emission line at the energy of E ≃ 6.4 keV consistent with the Fe K α is also observed. Our best-fit model requires at least three different components: (i) a hot emission component likely associated with the hot interstellar medium in this elliptical galaxy with temperature kT = 0.5 ± 0.1 keV; (ii) a warm absorber with ionization parameter log ξ = 2.3 ± 0.5 erg s{sup −1} cm, column density log N {sub H} = 20.7 ± 0.1 cm{sup −2}, and outflow velocity v {sub out} < 150 km s{sup −1}; and (iii) a lowly ionized reflection component in the Fe K band likely associated with the optical broad-line region or the outer accretion disk. These evidences suggest the possibility that we are looking directly down the ionization cone of this active galaxy and that the central X-ray source only photoionizes along the unobscured cone. This is overall consistent with the angle-dependent unified picture of active galactic nuclei.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2016

The 3D-HST survey: Hubble Space Telescope WFC3/G141 GRISM spectra, Redshifts, and emission line measurements for ∼100,000 galaxies

We present reduced data and data products from the 3D-HST survey, a 248-orbit HST Treasury program. The survey obtained WFC3 G141 grism spectroscopy in four of the five CANDELS fields: AEGIS, COSMOS, GOODS-S, and UDS, along with WFC3 H {sub 140} imaging, parallel ACS G800L spectroscopy, and parallel I {sub 814} imaging. In a previous paper, we presented photometric catalogs in these four fields and in GOODS-N, the fifth CANDELS field. Here we describe and present the WFC3 G141 spectroscopic data, again augmented with data from GO-1600 in GOODS-N (PI: B. Weiner). We developed software to automatically and optimally extract interlaced two-dimensional (2D) and one-dimensional (1D) spectra for all objects in the Skelton et al. (2014) photometric catalogs. The 2D spectra and the multi-band photometry were fit simultaneously to determine redshifts and emission line strengths, taking the morphology of the galaxies explicitly into account. The resulting catalog has redshifts and line strengths (where available) for 22,548 unique objects down to JH{sub IR}⩽24 (79,609 unique objects down to JH{sub IR}⩽26). Of these, 5459 galaxies are at z>1.5 and 9621 are at 0.7<z<1.5, where Hα falls in the G141 wavelength coverage. The typical redshift error for JH{sub IR}⩽24 galaxies is σ{sub z}≈0.003×(1+z), i.e., one native WFC3 pixel. The 3σ limit for emission line fluxes of point sources is 2.1×10{sup −17} erg s{sup −1} cm{sup −2}. All 2D and 1D spectra, as well as redshifts, line fluxes, and other derived parameters, are publicly available.{sup 18}.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2016

Far-infrared line spectra of active galaxies from the Herschel/PACS spectrometer: The complete database

We present a coherent database of spectroscopic observations of far-IR fine-structure lines from the Herschel/Photoconductor Array Camera and Spectrometer archive for a sample of 170 local active galactic nuclei (AGNs), plus a comparison sample of 20 starburst galaxies and 43 dwarf galaxies. Published Spitzer/IRS and Herschel/SPIRE line fluxes are included to extend our database to the full 10–600 μm spectral range. The observations are compared to a set of Cloudy photoionization models to estimate the above physical quantities through different diagnostic diagrams. We confirm the presence of a stratification of gas density in the emission regions of the galaxies, which increases with the ionization potential of the emission lines. The new [O iv]{sub 25.9μm}/[O iii]{sub 88μm} versus [Ne iii]{sub 15.6μm}/[Ne ii]{sub 12.8μm} diagram is proposed as the best diagnostic to separate (1) AGN activity from any kind of star formation and (2) low-metallicity dwarf galaxies from starburst galaxies. Current stellar atmosphere models fail to reproduce the observed [O iv]{sub 25.9μm}/[O iii]{sub 88μm} ratios, which are much higher when compared to the predicted values. Finally, the ([Ne iii]{sub 15.6μm} + [Ne ii]{sub 12.8μm})/([S iv]{sub 10.5μm} +[S iii]{sub 18.7μm}) ratio is proposed as a promising metallicity tracer to be used in obscured objects, where optical lines fail to accurately measure the metallicity. The diagnostic power of mid- to far-infrared spectroscopy shown here for local galaxies will be of crucial importance to study galaxy evolution during the dust-obscured phase at the peak of the star formation and black hole accretion activity (1<z<4). This study will be addressed by future deep spectroscopic surveys with present and forthcoming facilities such as the James Webb Space Telescope, the Atacama Large Millimeter/submillimeter Array, and the Space Infrared telescope for Cosmology and Astrophysics.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2019

SMA Line Observations of the CH{sub 3}OH-maser Outflow in DR21(OH)

We present a (sub)millimeter line survey of the methanol maser outflow located in the massive star-forming region DR21(OH) carried out with the Submillimeter Array (SMA) at 217/227 GHz and 337/347 GHz. We find transitions from several molecules toward the maser outflow such as CH{sub 3}OH, H{sub 2}CS, C{sup 17}O, H{sup 13}CO{sup +}, and C{sup 34}S. However, with the present observations, we cannot discard the possibility that some of the observed species such as C{sup 17}O, C{sup 34}S, and H{sub 2}CS, might be instead associated with the compact and dusty continuum sources located in the MM2 region. Given that most of transitions correspond to methanol lines, we have computed a rotational diagram with CASSIS and an LTE synthetic spectra with XCLASS for the detected methanol lines in order to estimate the rotational temperature and column density in the small solid angle of the outflow where enough lines are present. We obtain a rotational temperature of 28 ± 2.5 K and a column density of 6.0 ± 0.9 × 10{sup 15} cm{sup −2}. These values are comparable to those column densities/rotational temperatures reported in outflows emanating from low-mass stars. Extreme and moderate physical conditions to excite the maser and thermal emission coexist within the CH{sub 3}OH flow. Finally, we do not detect any complex molecules associated with the flow, e.g., CH{sub 3}OCHO, (CH{sub 3}){sub 2}CO, and CH{sub 3}CH{sub 2}CN.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2019

Atomic Absorption Line Diagnostics for the Physical Properties of Red Supergiants

Red supergiants (RSGs) are evolved massive stars that represent extremes, in both their physical sizes and their cool temperatures, of the massive star population. The effective temperature (T {sub eff}) is the most critical physical property needed to place an RSG on the Hertzsprung–Russell Diagram, due to the stars’ cool temperatures and resulting large bolometric corrections. Several recent papers have examined the potential utility of atomic line equivalent widths (EWs) in cool supergiant (CSG) spectra for determining T {sub eff} and other physical properties and found strong correlations between Ti i and Fe i spectral features and T {sub eff} in earlier-type CSGs (G and early K) but poor correlations in M-type stars, a spectral subtype that makes up a significant fraction of RSGs. We have extended this work by measuring the EWs of Ti, Fe, and Ca lines in late K- and M-type RSGs in the Milky Way, Large Magellanic Cloud, and Small Magellanic Cloud, and compared these results to the predictions of the theoretical stellar LTE atmosphere models (MARCS) stellar atmosphere models. Our analyses show a poor correlation between T {sub eff} and the Fe i and Ti i lines in our observations (at odds with strong correlations predicted by stellar atmosphere models), but do find statistically significant correlations between T {sub eff} and the Ca ii triplet (CaT) features of Milky Way RSGs, suggesting that this could be a potential diagnostic tool for determining T {sub eff} in M-type supergiants. We also examine correlations between these spectral features and other physical properties of RSGs (including metallicity, surface gravity, and bolometric magnitude), and consider the underlying physics driving the evolution of atomic line spectra in RSGs.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

GLEAM: Galaxy Line Emission & Absorption Modeling

We present Galaxy Line Emission & Absorption Modeling (gleam), a Python tool for fitting Gaussian models to emission and absorption lines in large samples of 1D extragalactic spectra. gleam is tailored to work well in batch mode without much human interaction. With gleam, users can uniformly process a variety of spectra, including galaxies and active galactic nuclei, in a wide range of instrument setups and signal-to-noise regimes. gleam also takes advantage of multiprocessing capabilities to process spectra in parallel. With the goal of enabling reproducible workflows for its users, gleam employs a small number of input files, including a central, user-friendly configuration in which fitting constraints can be defined for groups of spectra and overrides can be specified for edge cases. For each spectrum, gleam produces a table containing measurements and error bars for the detected spectral lines and continuum and upper limits for nondetections. For visual inspection and publishing, gleam can also produce plots of the data with fitted lines overlaid. In the present paper, we describe gleam’s main features, the necessary inputs, expected outputs, and some example applications, including thorough tests on a large sample of optical/infrared multi-object spectroscopic observations and integral field spectroscopic data. gleam is developed as an open-source project hosted at https://github.com/multiwavelength/gleam and welcomes community contributions.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2017

The Transfer of Resonance Line Polarization with Partial Frequency Redistribution in the General Hanle–Zeeman Regime

The spectral line polarization encodes a wealth of information about the thermal and magnetic properties of the solar atmosphere. Modeling the Stokes profiles of strong resonance lines is, however, a complex problem both from a theoretical and computational point of view, especially when partial frequency redistribution (PRD) effects need to be taken into account. In this work, we consider a two-level atom in the presence of magnetic fields of arbitrary intensity (Hanle–Zeeman regime) and orientation, both deterministic and micro-structured. Working within the framework of a rigorous PRD theoretical approach, we have developed a numerical code that solves the full non-LTE radiative transfer problem for polarized radiation, in one-dimensional models of the solar atmosphere, accounting for the combined action of the Hanle and Zeeman effects, as well as for PRD phenomena. After briefly discussing the relevant equations, we describe the iterative method of solution of the problem and the numerical tools that we have developed and implemented. We finally present some illustrative applications to two resonance lines that form at different heights in the solar atmosphere, and provide a detailed physical interpretation of the calculated Stokes profiles. We find that magneto-optical effects have a strong impact on the linear polarization signals that PRD effects produce in the wings of strong resonance lines. We also show that the weak-field approximation has to be used with caution when PRD effects are considered.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2017

Broad-lined Supernova 2016coi with a Helium Envelope

We present the early-phase spectra and the light curves of the broad-lined (BL) supernova (SN) 2016coi from t = 7 to 67 days after the estimated explosion date. This SN was initially reported as a BL Type SN Ic (SN Ic-BL). However, we found that spectra up to t = 12 days exhibited the He i λ 5876, λ 6678, and λ 7065 absorption lines. We show that the smoothed and blueshifted spectra of normal SNe Ib are remarkably similar to the observed spectrum of SN 2016coi. The line velocities of SN 2016coi were similar to those of SNe Ic-BL and significantly faster than those of SNe Ib. Analyses of the line velocity and light curve suggest that the kinetic energy and the total ejecta mass of SN 2016coi are similar to those of SNe Ic-BL. Together with BL SNe 2009bb and 2012ap, for which the detection of He i was also reported, these SNe could be transitional objects between SNe Ic-BL and SNe Ib, and be classified as BL Type “Ib” SNe (SNe “Ib”-BL). Our work demonstrates the diversity of the outermost layer in BL SNe, which should be related to the variety of the evolutionary paths.

79 ASTRONOMY AND ASTROPHYSICS↗