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At least 1,693 records · Page 94

Neutron skins: A perspective from dispersive optical models

An overview of neutron skin predictions obtained using an empirical nonlocal dispersive optical model (DOM) is presented. The DOM links both scattering and bound-state experimental data through a subtracted dispersion relation which allows for fully consistent, data-informed predictions for nuclei where such data exist. Large skins were predicted for both 48 Ca ( R$^{48}_{skin}$ = 0.25 ± 0.023 fm in 2017) and 208 Pb (R$^{208}_{skin}$) = 0.25 ± 0.05 fm in 2020). Whereas the DOM prediction in 208 Pb is within 1σ of the subsequent PREX-2 measurement, the DOM prediction in 48 Ca is over 2σ larger than the thin neutron skin resulting from CREX. From the moment it was revealed, the thin skin in 48 Ca has puzzled the nuclear-physics community as no adequate theories simultaneously predict both a large skin in 208 Pb and a small skin in 48 Ca. The DOM is unique in its ability to treat both structure and reaction data on the same footing, providing a unique perspective on this R skin puzzle. It appears vital that more neutron data be measured in both the scattering and bound-state domain for 48 Ca to clarify the situation.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Learning from knockout reactions using a dispersive optical model

We present the empirical dispersive optical model (DOM) as applied to direct nuclear reactions. The DOM links both scattering and bound-state experimental data through a dispersion relation, which allows for fully consistent, data-informed predictions for nuclei where such data exist. In particular, we review investigations of the electron-induced proton knockout reaction from both 40 Ca and 48 Ca in a distorted-wave impulse approximation (DWIA) utilizing the DOM for a fully consistent description. Viewing these reactions through the lens of the DOM allows us to connect the documented quenching of spectroscopic factors with the increased high-momentum proton content in neutron-rich nuclei. A similar DOM-DWIA description of the proton-induced knockout from 40 Ca, however, does not currently fit in the consistent story of its electron-induced counterpart. With the main difference in the proton-induced case being the use of an effective proton–proton interaction, we suggest that a more sophisticated in-medium interaction would produce consistent results.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Biodegradation Studies of Polyhydroxybutyrate and Polyhydroxybutyrate- co -Polyhydroxyvalerate Films in Soil

Due to increased environmental pressures, significant research has focused on finding suitable biodegradable plastics to replace ubiquitous petrochemical-derived polymers. Polyhydroxyalkanoates (PHAs) are a class of polymers that can be synthesized by microorganisms and are biodegradable, making them suitable candidates. The present study looks at the degradation properties of two PHA polymers: polyhydroxybutyrate (PHB) and polyhydroxybutyrate-co-polyhydroxyvalerate (PHBV; 8 wt.% valerate), in two different soil conditions: soil fully saturated with water (100% relative humidity, RH) and soil with 40% RH. The degradation was evaluated by observing the changes in appearance, chemical signatures, mechanical properties, and molecular weight of samples. Both PHB and PHBV were degraded completely after two weeks in 100% RH soil conditions and showed significant reductions in mechanical properties after just three days. The samples in 40% RH soil, however, showed minimal changes in mechanical properties, melting temperatures/crystallinity, and molecular weight over six weeks. By observing the degradation behavior for different soil conditions, these results can pave the way for identifying situations where the current use of plastics can be replaced with biodegradable alternatives.

36 MATERIALS SCIENCE↗

Interpreting pulse-shape effects in pump-probe spectroscopies

The effect of the pulse-shape on pump-probe spectroscopies is examined for the simplest model of noninteracting fermions on an infinite-dimensional hypercubic lattice. The probe-modified density of states follows the time evolution of the pump and displays narrowing and Floquet-like sidebands at the pump maximum, whereas the photoelectron spectra are also strongly affected by the nonequilibrium occupation of the single-particle states due to the excitation from the pump. The nonequilibrium Raman cross section is derived, and the nonresonant one in both the A 1g and B 1g symmetries contains a number of peaks at the pump maximum, which can be attributed to an interference effect or Brillouin scattering off the time variations of the stress tensor. Both the "measured" occupation of single-particle states and the ratio of Stokes to anti-Stokes peaks are strongly modified by the probe-pulse width, which must be included in the interpretation of experimental results.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

On strain energy and constitutive relations for alkali metals.

An expression for the strain energy as a continuous differentiable function of the Green-Cauchy deformation tensor is obtained for the alkali metals at absolute zero temperature. The development is based on well established quantum and classical calculations of the various contributions to the crystal energy. Stress-deformation relations are next obtained. As a check on the accuracy of the strain energy, theoretical calculations of the values of the second-order elastic coefficients are obtained and compared to known experimental data. The predicted values are shown to compare quite well with the experimental values.

Eftis, J.↗

Improvements in surface singularity analysis and design methods

The coupling of the combined source vortex distribution of Green's potential flow function with contemporary numerical techniques is shown to provide accurate, efficient, and stable solutions to subsonic inviscid analysis and design problems for multi-element airfoils. The analysis problem is solved by direct calculation of the surface singularity distribution required to satisfy the flow tangency boundary condition. The design or inverse problem is solved by an iteration process. In this process, the geometry and the associated pressure distribution are iterated until the pressure distribution most nearly corresponding to the prescribed design distribution is obtained. Typically, five iteration cycles are required for convergence. A description of the analysis and design method is presented, along with supporting examples.

Bristow, D. R.↗

Recombinant production of a functional SARS-CoV-2 spike receptor binding domain in the green algae Chlamydomonas reinhardtii

Recombinant production of viral proteins can be used to produce vaccine antigens or reagents to identify antibodies in patient serum. Minimally, these proteins must be correctly folded and have appropriate post-translation modifications. Here we report the production of the SARS-CoV-2 spike protein Receptor Binding Domain (RBD) in the green algae Chlamydomonas . RBD fused to a fluorescent reporter protein accumulates as an intact protein when targeted for ER-Golgi retention or secreted from the cell, while a chloroplast localized version is truncated. The ER-retained RBD fusion protein was able to bind the human ACE2 receptor, the host target of SARS-CoV-2, and was specifically out-competed by mammalian cell-produced recombinant RBD, suggesting that the algae produced proteins are sufficiently post-translationally modified to act as authentic SARS-CoV-2 antigens. Because algae can be grown at large scale very inexpensively, this recombinant protein may be a low cost alternative to other expression platforms.

59 BASIC BIOLOGICAL SCIENCES↗

Local and Global Function Model of the Liver

Purpose: To develop a local and global function model in the liver based on regional and organ function measurements to support individualized adaptive radiation therapy (RT). Methods and Materials: A local and global model for liver function was developed to include both functional volume and the effect of functional variation of subunits. Adopting the assumption of parallel architecture in the liver, the global function was composed of a sum of local function probabilities of subunits, varying between 0 and 1. The model was fit to 59 datasets of liver regional and organ function measures from 23 patients obtained before, during, and 1 month after RT. The local function probabilities of subunits were modeled by a sigmoid function in relating to MRI-derived portal venous perfusion values. The global function was fitted to a logarithm of an indocyanine green retention rate at 15 minutes (an overall liver function measure). Cross-validation was performed by leave-m-out tests. The model was further evaluated by fitting to the data divided according to whether the patients had hepatocellular carcinoma (HCC) or not. Results: The liver function model showed that (1) a perfusion value of 68.6 mL/(100 g · min) yielded a local function probability of 0.5; (2) the probability reached 0.9 at a perfusion value of 98 mL/(100 g · min); and (3) at a probability of 0.03 [corresponding perfusion of 38 mL/(100 g · min)] or lower, the contribution to global function was lost. Cross-validations showed that the model parameters were stable. The model fitted to the data from the patients with HCC indicated that the same amount of portal venous perfusion was translated into less local function probability than in the patients with non-HCC tumors. Conclusions: The developed liver function model could provide a means to better assess individual and regional dose-responses of hepatic functions, and provide guidance for individualized treatment planning of RT.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Dramatic changes in mitochondrial subcellular location and morphology accompany activation of the CO 2 concentrating mechanism

Dynamic changes in intracellular ultrastructure can be critical for the ability of organisms to acclimate to environmental conditions. Microalgae, which are responsible for ~50% of global photosynthesis, compartmentalize their Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase (Rubisco) into a specialized structure known as the pyrenoid when the cells experience limiting CO 2 conditions; this compartmentalization is a component of the CO 2 Concentrating Mechanism (CCM), which facilitates photosynthetic CO 2 fixation as environmental levels of inorganic carbon (Ci) decline. Changes in the spatial distribution of mitochondria in green algae have also been observed under CO 2 limitation, although a role for this reorganization in CCM function remains unclear. We used the green microalga Chlamydomonas reinhardtii to monitor changes in mitochondrial position and ultrastructure as cells transition between high CO 2 and Low/Very Low CO 2 (LC/VLC). Upon transferring cells to VLC, the mitochondria move from a central to a peripheral cell location and orient in parallel tubular arrays that extend along the cell’s apico-basal axis. We show that these ultrastructural changes correlate with CCM induction and are regulated by the CCM master regulator CIA5. The apico-basal orientation of the mitochondrial membranes, but not the movement of the mitochondrion to the cell periphery, is dependent on microtubules and the MIRO1 protein, with the latter involved in membrane–microtubule interactions. Furthermore, blocking mitochondrial respiration in VLC-acclimated cells reduces the affinity of the cells for Ci. Overall, our results suggest that mitochondrial repositioning functions in integrating cellular architecture and energetics with CCM activities and invite further exploration of how intracellular architecture can impact fitness under dynamic environmental conditions.

CO2 concentrating mechanism↗

Response of thyroid follicular cells to gamma irradiation compared to proton irradiation: II. The role of connexin 32

The objective of this study was to determine whether connexin 32-type gap junctions contribute to the "contact effect" in follicular thyrocytes and whether the response is influenced by radiation quality. Our previous studies demonstrated that early-passage follicular cultures of Fischer rat thyroid cells express functional connexin 32 gap junctions, with later-passage cultures expressing a truncated nonfunctional form of the protein. This model allowed us to assess the role of connexin 32 in radiation responsiveness without relying solely on chemical manipulation of gap junctions. The survival curves generated after gamma irradiation revealed that early-passage follicular cultures had significantly lower values of alpha (0.04 Gy(-1)) than later-passage cultures (0.11 Gy(-1)) (P < 0.0001, n = 12). As an additional way to determine whether connexin 32 was contributing to the difference in survival, cultures were treated with heptanol, resulting in higher alpha values, with early-passage cultures (0.10 Gy(-1)) nearly equivalent to untreated late-passage cultures (0.11 Gy(-1)) (P > 0.1, n = 9). This strongly suggests that the presence of functional connexin 32-type gap junctions was contributing to radiation resistance in gamma-irradiated thyroid follicles. Survival curves from proton-irradiated cultures had alpha values that were not significantly different whether cells expressed functional connexin 32 (0.10 Gy(-1)), did not express connexin 32 (0.09 Gy(-1)), or were down-regulated (early-passage plus heptanol, 0.09 Gy(-1); late-passage plus heptanol, 0.12 Gy(-1)) (P > 0.1, n = 19). Thus, for proton irradiation, the presence of connexin 32-type gap junctional channels did not influence their radiosensitivity. Collectively, the data support the following conclusions. (1) The lower alpha values from the gamma-ray survival curves of the early-passage cultures suggest greater repair efficiency and/or enhanced resistance to radiation-induced damage, coincident with the expression of connexin 32-type gap junctions. (2) The increased sensitivity of FRTL-5 cells to proton irradiation was independent of their ability to communicate through connexin 32 gap junctions. (3) The fact that the beta components of the survival curves from both gamma rays and proton beams were similar (average 0.022 +/- 0.008 Gy(-2), P > 0.1, n = 39) suggests that at higher doses the loss of viability occurs at a relatively constant rate and is independent of radiation quality and the presence of functional gap junctions.

Non-NASA Center↗

Structure-Function of the Cytochrome b 6 f Complex of Oxygenic Photosynthesis

Structure–function of the major integral membrane cytochrome b 6 f complex that functions in cyanobacteria, algae, and green plants to transfer electrons between the two reaction center complexes in the electron transport chain of oxygenic photosynthesis is discussed in the context of recently obtained crystal structures of the complex and soluble domains of cytochrome f and the Rieske iron–sulfur protein. The energy-transducing function of the complex, generation of the proton trans-membrane electrochemical potential gradient, centers on the oxidation/reduction pathways of the plastoquinol/plastoquinone (QH 2 /Q), the proton donor/acceptor within the complex. These redox reactions are carried out by five redox prosthetic groups embedded in each monomer, the high potential two iron–two sulfur cluster and the heme of cytochrome f on the electropositive side (p) of the complex, two noncovalently bound b-type hemes that cross the complex and the membrane, and a covalently bound c-type heme (c n ) on the electronegative side (n). These five redox-active groups are organized in high- (cyt f/[2Fe–2S] and low-potential (hemes b p , b n , c n ) electron transport pathways that oxidize and reduce the quinol and quinone on the p- and n-sides in a Q-cycle-type mechanism, while translocating as many as 2 H + to the p-side aqueous side for every electron transferred through the high potential chain to the photosystem I reaction center. The presence of heme c n and the connection of the n-side of the membrane and b 6 f complex to the cyclic electron transport chain indicate that the Q cycle in the oxygenic photosynthetic electron transport chain differs from those connected to the bc 1 complex in the mitochondrial respiratory chain and the chain in photosynthetic bacteria. Inferences from the structure and C2 symmetry of the complex for the pathway of QH 2 /Q transfer within the complex, problems posed by the presence of lipid in the inter-monomer cavity, and the narrow portal for QH2 passage through the p-side oxidation site proximal to the [2Fe–2S] cluster are discussed.

Cramer, W. A.↗

Quinolyl functionalized spiro[fluorene-9,9'-xanthene] host materials with bipolar characteristics for green and red phosphorescent organic light-emitting diodes

Spiro[fluorene-9,9'-xanthene] (SFX) bipolar hosts bearing one, two and three quinolyl substituents, namely SFX-bPy, SFX-DbPy and SFX-TbPy, were designed and synthesized for phosphorescent organic light emitting diodes (PhOLEDs). The successive substitution of quinoline at 2', 2 and 7' positions of SFX results in reduced LUMO energy levels while leaving the HOMO energy levels nearly intact. The impact of quinoline substitution in these SFX-based hosts on PhOLED performance was investigated in detail through green and red model devices. For the green emitting devices, the device based on SFX-bPy host showed better performance (23.6 cd A -1 , 23.4 lm W -1 , 6.3%) due to high triplet energy level ( T 1 ) and balanced carriers-transporting ability. In contrast, for the red PhOLED devices, the device hosted by SFX-DbPy displayed higher performance (15.8 cd A -1 , 16.0 lm W -1 , 9.1%), attributable to the well matched T 1 and separated frontier molecular orbitals. This work thus sheds light on the rational design of SFX-based bipolar hosts for more efficient PhOLEDs.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

LOW X-RAY LUMINOSITY GALAXY CLUSTERS: MAIN GOALS, SAMPLE SELECTION, PHOTOMETRIC AND SPECTROSCOPIC OBSERVATIONS

We present our study of 19 low X-ray luminosity galaxy clusters (L{sub X} ∼ 0.5–45 × 10{sup 43} erg s{sup −1}), selected from the ROSAT Position Sensitive Proportional Counters Pointed Observations and the revised version of Mullis et al. in the redshift range of 0.16–0.7. This is the introductory paper of a series presenting the sample selection, photometric and spectroscopic observations, and data reduction. Photometric data in different passbands were taken for eight galaxy clusters at Las Campanas Observatory; three clusters at Cerro Tololo Interamerican Observatory; and eight clusters at the Gemini Observatory. Spectroscopic data were collected for only four galaxy clusters using Gemini telescopes. Using the photometry, the galaxies were defined based on the star-galaxy separation taking into account photometric parameters. For each galaxy cluster, the catalogs contain the point-spread function and aperture magnitudes of galaxies within the 90% completeness limit. They are used together with structural parameters to study the galaxy morphology and to estimate photometric redshifts. With the spectroscopy, the derived galaxy velocity dispersion of our clusters ranged from 507 km s{sup −1} for [VMF98]022 to 775 km s{sup −1} for [VMF98]097 with signs of substructure. Cluster membership has been extensively discussed taking into account spectroscopic and photometric redshift estimates. In this sense, members are the galaxies within a projected radius of 0.75 Mpc from the X-ray emission peak and with clustercentric velocities smaller than the cluster velocity dispersion or 6000 km s{sup −1}, respectively. These results will be used in forthcoming papers to study, among the main topics, the red cluster sequence, blue cloud and green populations, the galaxy luminosity function, and cluster dynamics.

79 ASTRONOMY AND ASTROPHYSICS↗

Improving Trigger Functions for Convective Parameterization Schemes Using GOAmazon Observations

Using observations from the Green Ocean Amazon (GOAmazon) field campaign, this study aims to improve trigger functions of convection schemes. Results show that the CAPE generation rate (dCAPE)-type triggers are the first tier and that the Bechtold and heated condensation framework (HCF) triggers are a distant second tier. The composite analysis reveals that the undilute dCAPE trigger underpredicts convection when there is bottom-heavy upward motion but overpredicts convection with low-level downward and upper-level upward motions. The empirical orthogonal function (EOF) analysis on vertical velocity shows that EOF1 (62.65%) exhibits upward motion throughout the troposphere and that EOF2 (28.05%) has lower-level upward motion and upper-level downward motion. Both of them have close relationships with precipitation, indicating the role of vertical velocity in triggering convection. The skill sensitivity analysis shows that the inclusion of 700-hPa upward motion significantly enhances the undilute dCAPE trigger. For the dilute dCAPE trigger, entrainment rate and dCAPE threshold are optimized to improve it. Opposite to dCAPE-type triggers, the Bechtold trigger overemphasizes the low-level vertical velocity and underpredicts the mature and decaying phases of long-lasting convection events. The HCF trigger overemphasizes the near-surface moist static energy and overlooks the vertical velocity. The performance of dCAPE-type triggers on various convective systems over the Amazon region is examined. The eastward-propagating systems are best represented, with only a few underpredictions in their decaying stages. The weak locally occurring systems and marginal phases of westward-propagating systems are easy to underpredict. The revised dCAPE-type triggers perform better on different convection systems and the diurnal cycle of convection.

54 ENVIRONMENTAL SCIENCES↗

Investigating the nanostructure and thermal properties of chiral poly(amide-imide)/Al{sub 2}O{sub 3} compatibilized with 3-aminopropyltriethoxysilane

Graphical abstract: - Highlights: • Chiral polymer with different functional groups was prepared in green route. • The surface of Al{sub 2}O{sub 3}-NPs was treated by KH550 as a silane coupling agent. • NCs of poly(amide-imide) and Al{sub 2}O{sub 3} were synthesized by ultrasonic irradiation. • TEM results show good dispersion of Al{sub 2}O{sub 3}-NPs in the poly(amide-imide) matrix. • The thermal and mechanical properties of the hybrid materials were improved. - Abstract: Novel chiral poly(amide-imide) (PAI)/Al{sub 2}O{sub 3} nanocomposites were prepared via incorporating surface modified Al{sub 2}O{sub 3} nanoparticles into polymer matrices for the first time. In the process of preparing the nanocomposites, severe aggregation of Al{sub 2}O{sub 3} nanoparticles could be reduced by surface modification and γ-aminopropyltriethoxysilane. The optically active PAI chains were formed from the polycondensation reaction of N,N′-(pyromellitoyl)-bis-phenylalanine diacid with 2-(3,5-diaminophenyl)-benzimidazole in green condition. The obtained polymer and inorganic metal oxide nanoparticles were used to prepare chiral PAI/Al{sub 2}O{sub 3} nanocomposites through ultrasonic irradiation. The resulting nanoparticle filled composites were also characterized by Fourier transform infrared spectroscopy, X-ray diffraction, field emission scanning electron microscopy, transmission electron microscopy and thermogravimetric analysis (TGA) techniques. TGA thermographs confirmed that the heat stability of the prepared nanoparticle-reinforced composites was improved. Mechanical properties showed that the film containing 10 wt% of modified Al{sub 2}O{sub 3} had a tensile strength of the order of 83.6 MPa, relative to the 64.3 MPa of the pure PAI.

36 MATERIALS SCIENCE↗

Interrogating biomineralization one amino acid at a time: amplification of mutational effects in protein-aided titania morphogenesis through reaction-diffusion control

To emulate the control that biomineralizing organisms exert over reactant transport, we construct a countercurrent reaction-diffusion chamber in which an agarose hydrogel regulates the fluxes of inorganic precursor and precipitating solid-binding protein. Furthermore, we show that the morphology of the bioprecipitated titania can be changed from monolithic to interconnected particle networks and dispersed nanoparticles either by decreasing reaction time or by increasing agarose weight percentage at constant precursor and protein concentrations. More strikingly, protein variants with one or two substitutions in their metal oxide-binding domain yield unique peripheral morphologies (needles, threads, plates, and peapods) with distinct crystallography and photocatalytic activity. Our results suggest that diffusional control can magnify otherwise subtle mutational effects in biomineralizing proteins and provide a path for the green synthesis of morphologically and functionally diverse inorganic materials.

59 BASIC BIOLOGICAL SCIENCES↗

Phototaxis in a wild isolate of the cyanobacterium Synechococcus elongatus

Many cyanobacteria, which use light as an energy source via photosynthesis, have evolved the ability to guide their movement toward or away from a light source. This process, termed “phototaxis,” enables organisms to localize in optimal light environments for improved growth and fitness. Mechanisms of phototaxis have been studied in the coccoid cyanobacterium Synechocystis sp. strain PCC 6803, but the rod-shaped Synechococcus elongatus PCC 7942, studied for circadian rhythms and metabolic engineering, has no phototactic motility. In this study we report a recent environmental isolate of S. elongatus , the strain UTEX 3055, whose genome is 98.5% identical to that of PCC 7942 but which is motile and phototactic. A six-gene operon encoding chemotaxis-like proteins was confirmed to be involved in phototaxis. Environmental light signals are perceived by a cyanobacteriochrome, PixJ Se (Synpcc7942_0858), which carries five GAF domains that are responsive to blue/green light and resemble those of PixJ from Synechocystis . Furthermore, plate-based phototaxis assays indicate that UTEX 3055 uses PixJ Se to sense blue and green light. Mutation of conserved functional cysteine residues in different GAF domains indicates that PixJ Se controls both positive and negative phototaxis, in contrast to the multiple proteins that are employed for implementing bidirectional phototaxis in Synechocystis .

59 BASIC BIOLOGICAL SCIENCES↗