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At least 1,693 records · Page 94
All sourcesNASA NTRSDOE OSTI
DOE OSTI2016

Quantitative Analysis of {sup 18}F-Fluorodeoxyglucose Positron Emission Tomography Identifies Novel Prognostic Imaging Biomarkers in Locally Advanced Pancreatic Cancer Patients Treated With Stereotactic Body Radiation Therapy

Purpose: To identify prognostic biomarkers in pancreatic cancer using high-throughput quantitative image analysis. Methods and Materials: In this institutional review board–approved study, we retrospectively analyzed images and outcomes for 139 locally advanced pancreatic cancer patients treated with stereotactic body radiation therapy (SBRT). The overall population was split into a training cohort (n=90) and a validation cohort (n=49) according to the time of treatment. We extracted quantitative imaging characteristics from pre-SBRT {sup 18}F-fluorodeoxyglucose positron emission tomography, including statistical, morphologic, and texture features. A Cox proportional hazard regression model was built to predict overall survival (OS) in the training cohort using 162 robust image features. To avoid over-fitting, we applied the elastic net to obtain a sparse set of image features, whose linear combination constitutes a prognostic imaging signature. Univariate and multivariate Cox regression analyses were used to evaluate the association with OS, and concordance index (CI) was used to evaluate the survival prediction accuracy. Results: The prognostic imaging signature included 7 features characterizing different tumor phenotypes, including shape, intensity, and texture. On the validation cohort, univariate analysis showed that this prognostic signature was significantly associated with OS (P=.002, hazard ratio 2.74), which improved upon conventional imaging predictors including tumor volume, maximum standardized uptake value, and total legion glycolysis (P=.018-.028, hazard ratio 1.51-1.57). On multivariate analysis, the proposed signature was the only significant prognostic index (P=.037, hazard ratio 3.72) when adjusted for conventional imaging and clinical factors (P=.123-.870, hazard ratio 0.53-1.30). In terms of CI, the proposed signature scored 0.66 and was significantly better than competing prognostic indices (CI 0.48-0.64, Wilcoxon rank sum test P<1e-6). Conclusion: Quantitative analysis identified novel {sup 18}F-fluorodeoxyglucose positron emission tomography image features that showed improved prognostic value over conventional imaging metrics. If validated in large, prospective cohorts, the new prognostic signature might be used to identify patients for individualized risk-adaptive therapy.

62 RADIOLOGY AND NUCLEAR MEDICINE↗
DOE OSTI2025

Geochemical Phosphorus Sequestration in Tundra Soils Impedes Delivery of Bioavailable Phosphorus to the Kuparuk River, Alaska, USA: Implications for the Broader Arctic Region

Long-term river monitoring of the Kuparuk River (North Slope, Alaska, USA) confirms significant increases in solutes that are indicative of active layer thickening due to thawing permafrost. However, there is no evidence of an increase in total dissolved phosphorus (TDP) or soluble reactive phosphorus (SRP), the nutrient that limits primary production in this and similar rivers in the region. Here, we show that Mehlich-3 extractable iron (Fe) and aluminum (Al) in active layer soils impart high P geochemical sorption capacities across a range of landscape features that we would expect to promote lateral movement of water and solutes to headwater streams in our study watershed. Reanalysis of a recently published pan-Arctic soils database that includes active layer and permafrost soil samples suggests that this high P sorption capacity could be common in other parts of the Arctic region. We conclude that soil minerals enhance P retention on hillslopes and propose pedogenic secondary Fe and Al minerals may continue to retain P in these soils and limit biological productivity in the adjacent river even as active layer thickening increases potential P mobility in the watershed. We suggest that similar interactions may occur in other areas of the Arctic where comparable geochemical conditions prevail.

Sutor, Frederick W. [Univ. of Vermont, Burlington,↗
DOE OSTI2011

High-precision determination of the electric and magnetic form factors of the proton

New precise results of a measurement of the elastic electron-proton scattering cross section performed at the Mainz Microtron MAMI are presented. About 1400 cross sections were measured with negative four-momentum transfers squared up to Q{sup 2} = (GeV/c){sup 2} with statistical errors below 0.2%. The electric and magnetic form factors of the proton were extracted by fits of a large variety of form factor models directly to the cross sections. The form factors show some features at the scale of the pion cloud. The charge and magnetic radii are determined to be r{sub E}{sup 2} rpost={sup >>1/2} 0.879(5){sub stat.}(4){sub syst.}(2){sub model}(4){sub group}fm and r{sub M}{sup 2} {sup 1/2} = 0.777(13){sub stat.}(9){sub syst.}(5)model({sub 2})groupfm.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2016

Isotopomer-selective spectra of a single intact H 2 O molecule in the Cs + (D 2 O) 5 H 2 O isotopologue: Going beyond pattern recognition to harvest the structural information encoded in vibrational spectra

We report the vibrational signatures of a single H 2 O water molecule occupying distinct sites of the hydration network in the Cs + (H 2 O) 6 cluster. This is accomplished using isotopomer selective IR-IR hole-burning on the Cs + (D 2 O) 5 (H 2 O) clusters formed by gas-phase exchange of a single, intact H 2 O molecule for D 2 O in the Cs + (D 2 O) 6 ion. The OH stretching pattern of the Cs + (H 2 O) 6 isotopologue is accurately recovered by superposition of the isotopomer spectra, thus establishing that the H 2 O incorporation is random and that the OH stretching manifold is largely due to contributions from decoupled water molecules. This behavior enables a powerful new way to extract structural information from vibrational spectra of size-selected clusters by explicitly identifying the local environments responsible for specific infrared features. The Cs + (H 2 O) 6 structure was unambiguously assigned to the 4.1.1 isomer (a homodromic water tetramer with two additional flanking water molecules) from the fact that its computed IR spectrum matches the observed overall pattern and recovers the embedded correlations in the two OH stretching bands of the water molecule in the Cs + (D 2 O) 5 (H 2 O) isotopomers. The 4.1.1 isomer is the lowest in energy among other candidate networks at advanced (e.g., CCSD(T)) levels of theoretical treatment after corrections for (anharmonic) zero-point energy (ZPE). With the structure in hand, we then explore the mechanical origin of the various band locations using a local electric field formalism. Furthermore, this approach promises to provide a transferrable scheme for the prediction of the OH stretching fundamentals displayed by water networks in close proximity to solute ions.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2024

Tracking the topology of neural manifolds across populations

Neural manifolds summarize the intrinsic structure of the information encoded by a population of neurons. Advances in experimental techniques have made simultaneous recordings from multiple brain regions increasingly commonplace, raising the possibility of studying how these manifolds relate across populations. However, when the manifolds are nonlinear and possibly code for multiple unknown variables, it is challenging to extract robust and falsifiable information about their relationships. We introduce a framework, called the method of analogous cycles, for matching topological features of neural manifolds using only observed dissimilarity matrices within and between neural populations. We demonstrate via analysis of simulations and in vivo experimental data that this method can be used to correctly identify multiple shared circular coordinate systems across both stimuli and inferred neural manifolds. Conversely, the method rejects matching features that are not intrinsic to one of the systems. Further, as this method is deterministic and does not rely on dimensionality reduction or optimization methods, it is amenable to direct mathematical investigation and interpretation in terms of the underlying neural activity. We thus propose the method of analogous cycles as a suitable foundation for a theory of cross-population analysis via neural manifolds.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2015

On reaching the adiabatic limit in multi-field inflation

We calculate the scalar spectral index n{sub s} and the tensor-to-scalar ratio r in a class of recently proposed two-field no-scale inflationary models in supergravity. We show that, in order to obtain correct predictions, it is crucial to take into account the coupling between the curvature and the isocurvature perturbations induced by the noncanonical form of the kinetic terms. This coupling enhances the curvature perturbation and suppresses the resulting tensor-to-scalar ratio to the per mille level even for values of the slow-roll parameter ε ∼ 0.01. Beyond these particular models, we emphasise that multifield models of inflation are a priori not predictive, unless one supplies a prescription for the post-inflationary era, or an adiabatic limit is reached before the end of inflation. We examine the conditions that enabled us to actually derive predictions in the models under study, by analysing the various contributions to the effective isocurvature mass in general two-field inflationary models. In particular, we point out a universal geometrical contribution that is important at the end of inflation, and which can be directly extracted from the inflationary Lagrangian, independently of a specific trajectory. Eventually, we point out that spectator fields can lead to oscillatory features in the time-dependent power spectra at the end of inflation. We demonstrate how these features can be model semi-analytically as well as the theoretical uncertainties they can entail.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Non-linearities in the Lyman-α forest and in its cross-correlation with dark matter halos

Here three-dimensional correlations of the Lyman-α (Lyα) forest and cross correlations between the Lyα forest and quasars have been measured on large scales, allowing a precise measurement of the baryon acoustic oscillation (BAO) feature at redshifts z > 2. These 3D correlations are often modelled using linear perturbation theory, but full-shape analyses to extract cosmological information beyond BAO will require more realistic models capable of describing non-linearities present at smaller scales. We present a measurement of the Lyα forest flux power spectrum from large hydrodynamic simulations — the Sherwood simulations — and compare it to different models describing the small-scale deviations from linear theory. We confirm that the model presented in Arinyo-i-Prats et al. (2015) fits the measured 3D power up to k = 10 h Mpc -1 with an accuracy better than 5%, and show that the same model can also describe the 1D correlations with similar precision. We also present, for the first time, an equivalent study for the cross-power spectrum of halos with the Lyα forest, and we discuss different challenges we face when modelling the cross-power spectrum beyond linear scales. We make all our measured power spectra public in https://github.com/andreufont/sherwoo_p3d. This study is a step towards joint analyses of 1D and 3D flux correlations, and towards using the quasar-Lyα cross-correlation beyond BAO analyses.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2016

An a 0 resonance in strongly coupled π η , K K ¯ scattering from lattice QCD

Here, we present the first calculation of coupled-channel meson-meson scattering in the isospin $=1$, $G$-parity negative sector, with channels $\pi \eta$, $K\overline{K}$ and $\pi \eta'$, in a first-principles approach to QCD. From the discrete spectrum of eigenstates in three volumes extracted from lattice QCD correlation functions we determine the energy dependence of the $S$-matrix, and find that the $S$-wave features a prominent cusp-like structure in $\pi \eta \to \pi \eta$ close to $K\overline{K}$ threshold coupled with a rapid turn on of amplitudes leading to the $K\overline{K}$ final-state. This behavior is traced to an $a_0(980)$-like resonance, strongly coupled to both $\pi \eta$ and $K\overline{K}$, which is identified with a pole in the complex energy plane, appearing on only a single unphysical Riemann sheet. Consideration of $D$-wave scattering suggests a narrow tensor resonance at higher energy.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2019

Wobbly Dark Matter Signals at Cherenkov Telescopes from Long-Lived Mediator Decays

Imaging Atmospheric Cherenkov telescope (IACT) searches for dark matter often perform observations in “wobble mode,” i.e., simultaneously collecting data from the signal region and from a corresponding background control region. This observation strategy is possibly compromised in scenarios where dark matter annihilates to long-lived mediators that can traverse astrophysical distances before decaying to produce the gamma rays observed by the IACTs. In this Letter, we show that this challenge comes with several interesting features and opportunities: in addition to signal contamination in the background control region, the gamma-ray spectrum changes with the observing direction angle and typically exhibits a hard excess at high energies. Furthermore, such features represent a significant departure from the canonical picture and offer novel handles to identify a dark matter signal and to extract underlying dark matter parameters.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2019

Adversarial Training for Privacy-Preserving Deep Learning Model Distribution

Collaboration among cancer registries is essential to develop accurate, robust, and generalizable deep learning models for automated information extraction from cancer pathology reports. Sharing data presents a serious privacy issue, especially in biomedical research and healthcare delivery domains. Distributing pretrained deep learning (DL) models has been proposed to avoid critical data sharing. However, there is growing recognition that collaboration among clinical institutes through DL model distribution exposes new security and privacy vulnerabilities. These vulnerabilities increase in natural language processing (NLP) applications, in which the dataset vocabulary with word vector representations needs to be associated with the other model parameters. In this paper, we propose a novel privacy-preserving DL model distribution across cancer registries for information extraction from cancer pathology reports with privacy and confidentiality considerations. The proposed approach exploits the adversarial training framework to distinguish private features from shared features among different datasets. It only shares registry-invariant model parameters, without sharing raw data nor registry-specific model parameters among cancer registries. Thus, it protects both the data and the trained model simultaneously. We compare our proposed approach to single-registry models, and a model trained on centrally hosted data from different cancer registries. The results show that the proposed approach significantly outperforms the single-registry models and achieves statistically indistinguishable micro and macro F1-score as compared to the centralized model.

Alawad, Mohammed↗
DOE OSTI2019

Scalable Performance Awareness for In Situ Scientific Applications

Part of the promise of exascale computing and the next generation of scientific simulation codes is the ability to bring together time and spatial scales that have traditionally been treated separately. This enables creating complex coupled simulations and in situ analysis pipelines, encompassing such things as "whole device" fusion models or the simulation of cities from sewers to rooftops. Unfortunately, the HPC analysis tools that have been built up over the preceding decades are ill suited to the debugging and performance analysis of such computational ensembles. In this paper, we present a new vision for performance measurement and understanding of HPC codes, MonitoringAnalytics (MONA). MONA is designed to be a flexible, high performance monitoring infrastructure that can perform monitoring analysis in place or in transit by embedding analytics and characterization directly into the data stream, without relying upon delivering all monitoring information to a central database for post-processing. It addresses the trade-offs between the prohibitively expensive capture of all performance characteristics and not capturing enough to detect the features of interest. We demonstrate several uses of MONA; capturing and indexing multi-executable performance profiles to enable later processing, extraction of performance primitives to enable the generation of customizable benchmarks and performance skeletons, and extracting communication and application behaviors to enable better control and placement for the current and future runs of the science ensemble. Relevant performance information based on a system for MONA built from ADIOS and SOSflow technologies is provided for DOE science applications and leadership machines.

Wolf, Matthew D.↗
DOE OSTI2020

Adaptive thermal stabilization of an integrated photonic spectrometer using parasitic interference fringes

Parasitic fringe drift from unwanted scatterings limits the long-term stability of waveguide-based optical spectrometers. Yet their spectral features provide relevant information that can be used to improve performance of the spectrometer. We show that fringe drift can be extracted and utilized to perform accurate thermal stabilization, especially in the case of integrated waveguide sensors. In this Letter, effective stabilization of a methane silicon photonic sensor is demonstrated, and significant reduction in fringe noise is clearly observed.

Teng, Chu C.↗
DOE OSTI2021

OpenSesame tutorial

OpenSesame is a program for generating tabular equations of state (EOS), with capabilities for multiphase EOS construction. In this tutorial, we provide an overview of how to run OpenSesame to construct a multiphase EOS. We discuss some general features of OpenSesame, followed by a description of sample input files required for multiphase EOS construction. We also discuss how to extract data from EOS tables in order to compare to experimental data, with an example using the OpenSesame GUI. Lastly, we provide a description of how to generate ASCII-formatted EOS tables most often used by hydro code users.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2017

Challenges to Constraining Exoplanet Masses via Transmission Spectroscopy

MassSpec , a method for determining the mass of a transiting exoplanet from its transmission spectrum alone, was proposed by de Wit and Seager. The premise of this method relies on the planet’s surface gravity being extracted from the transmission spectrum via its effect on the atmospheric scale height, which in turn determines the strength of absorption features. Here, we further explore the applicability of MassSpec to low-mass exoplanets—specifically those in the super-Earth size range for which radial velocity determinations of the planetary mass can be extremely challenging and resource intensive. Determining the masses of these planets is of the utmost importance because their nature is otherwise highly unconstrained. Without knowledge of the mass, these planets could be rocky, icy, or gas-dominated. To investigate the effects of planetary mass on transmission spectra, we present simulated observations of super-Earths with atmospheres made up of mixtures of H{sub 2}O and H{sub 2}, both with and without clouds. We model their transmission spectra and run simulations of each planet as it would be observed with James Webb Space Telescope using the NIRISS, NIRSpec, and MIRI instruments. We find that significant degeneracies exist between transmission spectra of planets with different masses and compositions, making it impossible to unambiguously determine the planet’s mass in many cases.

79 ASTRONOMY AND ASTROPHYSICS↗
NASA NTRS1975

Low cost tracking Navaids error model verification

Features and characteristics of the tracking navaids (Microwave Scanning Beam Landing System, Radar Altimeter, Tacan, rendezvous radar and one way Doppler extracter) were investigated. From the investigation, a set of specifications were developed for building equipment to verify the error model of the tracking navaids. Breadboard verification equipment (BVE) was built for the Microwave Scanning Beam Landing System and the radar altimeter. The breadboard verification equipment generates signals to the tracking navaids which simulate the space shuttles trajectory in the terminal area. The BVE simulates sources of navaids error by generating pseudorandom perturbations on the navaids signals. Differences between the trajectory value and the navaid derived values are taped and form the basis for the navaids error model.

Charych, A.↗
NASA NTRS1982

An integrated regenerative air revitalization system for spacecraft

Progress towards development of an air revitalization system (ARS) for spacecraft breathable atmosphere regeneration is assessed, and a preliminary design for a one-person ARS is described. The ARS is considered a necessary component of any permanently manned orbital station, and studies have demonstrated that penalties for expendable air supplies justify an ARS for missions longer than 40 days. CO2 must be removed and O2 returned along with N2, which can be extracted from hydrazine, with the H2 component returning to the operation of the CO2 reduction subsystem. An experimental ARS (ARX-1) features a cabin humidity control unit, a CO2 concentrator, an air-cooled CO2 reduction reactor, an oxygen generator (electrolysis), the hydrazine N2 generator, and a water handling unit. A 120-day test demonstrated one-button startup and 480 hr operation in a normal mode.

Noyes, G. P.↗
NASA NTRS1987

Robotic vision/sensing for space applications

A review is presented of efforts currently in progress at the NASA/Johnson Space Center and Rice University, the accomplishments to date, and some of the anticipated future developments. Both systems and algorithms are discussed. The evolution of future vision/sensing is projected to included the fusion of multisensors ranging from microwave to optical with multimode capability to include position, attitude, recognition, and motion parameters. The algorithms for information extraction are expected to incorporate aspects of intelligence and knowledge for the interpolation and extrapolation of the needed data. The key features of the overall system design will be small size and weight, fast signal processing, robust algorithms, and accurate parameter determination. These aspects of vision/sensing are also discussed.

Krishen, Kumar↗
NASA NTRS1993

Pollutant emissions from and within a model gas turbine combustor at elevated pressures and temperatures

Conventional and advanced gas turbine engines are coming under increased scrutiny regarding pollutant emissions. This, in turn, has created a need to obtain in-situ experimental data at practical conditions, as well as exhaust data, and to obtain the data in combustors that reflect modern designs. The in-situ data are needed to (1) assess the effects of design modifications on pollutant formation, and (2) develop a detailed data base on combustor performance for the development and verification of computer modeling. This paper reports on a novel high pressure, high temperature facility designed to acquire such data under controlled conditions and with access (optical and extractive) for in-situ measurements. To evaluate the utility of the facility, a model gas turbine combustor was selected which features practical hardware design, two rows of jets (primary and dilution) with four jets in each row, and advanced wall cooling techniques with laser drilled effusive holes. The dome is equipped with a flat-vaned swirler with vane angles of 60 degrees. Data are obtained at combustor pressures ranging from 2 to 10 atmospheres of pressure, levels of air preheat to 427 C, combustor reference velocities from 10.0 to 20.0 m/s, and an overall equivalence ratio of 0.3. Exit plane and in-situ measurements are presented for HC, O2, CO2, CO, and NO(x). The exit plane emissions of NO(x) correspond to levels reported from practical combustors and the in-situ data demonstrate the utility and potential for detailed flow field measurements.

Drennan, S. A.↗