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At least 1,693 records · Page 94
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Beyond – ΛCDM constraints from the full shape clustering measurements from BOSS and eBOSS

We analyse the full shape of anisotropic clustering measurements from the extended Baryon Oscillation Spectroscopic Survey quasar sample together with the combined galaxy sample from the Baryon Oscillation Spectroscopic Survey. We obtain constraints on the cosmological parameters independent of the Hubble parameter h for the extensions of the Lambda cold dark matter (ΛCDM) models, focusing on cosmologies with free dark energy equation of state parameter w. We combine the clustering constraints with those from the latest cosmic microwave background data from Planck to obtain joint constraints for these cosmologies for w and the additional extension parameters – its time evolution w a , the physical curvature density ω K and the neutrino mass sum Σm ν . Our joint constraints are consistent with a flat ΛCDM cosmological model within 68 per cent confidence limits. We demonstrate that the Planck data are able to place tight constraints on the clustering amplitude today, σ 12 , in cosmologies with varying w and present the first constraints for the clustering amplitude for such cosmologies, which is found to be slightly higher than the ΛCDM value. Additionally, we show that when we vary w and allow for non-flat cosmologies and the physical curvature density is used, Planck prefers a curved universe at 4σ significance, which is ~2σ higher than when using the relative curvature density Ω K . Finally, when w is varied freely, clustering provides only a modest improvement (of 0.021 eV) on the upper limit of Σm ν .

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

A dark siren measurement of the Hubble constant using gravitational wave events from the first three LIGO/Virgo observing runs and DELVE

The current and next observation seasons will detect hundreds of gravitational waves (GWs) from compact binary systems coalescence at cosmological distances. When combined with independent electromagnetic measurements, the source redshift will be known, and we will be able to obtain precise measurements of the Hubble constant H_0 via the distance–redshift relation. However, most observed mergers are not expected to have electromagnetic counterparts, which prevents a direct redshift measurement. In this scenario, one possibility is to use the dark sirens method that statistically marginalizes over all the potential host galaxies within the GW location volume to provide a probabilistic source redshift. Here we presented H_0 measurements using two new dark sirens compared to previous analyses using DECam data: GW190924|$\_$|021846 and GW200202|$\_$|154313. The photometric redshifts of the possible host galaxies of these two events are acquired from the DECam Local Volume Exploration Survey (DELVE) carried out on the Blanco telescope at Cerro Tololo. The combination of the H_0 posterior from GW190924|$\_$|021846 and GW200202|$\_$|154313 together with the bright siren GW170817 leads to |$H_{0} = 68.84^{+15.51}_{-7.74}\, \rm {km\, s^{-1}\, Mpc^{-1}}$|⁠. Including these two dark sirens improves the 68 per cent confidence interval (CI) by 7 per cent over GW170817 alone. This demonstrates that the addition of well-localized dark sirens in such analysis improves the precision of cosmological measurements. Using a sample containing 10 well-localized dark sirens observed during the third LIGO/Virgo observation run, without the inclusion of GW170817, we determine a measurement of |$H_{0} = 76.00^{+17.64}_{-13.45}\, \rm {km\, s^{-1}\, Mpc^{-1}}$|⁠.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

DESI complete calibration of the colour–redshift relation (DC3R2): results from early DESI data

We present initial results from the Dark Energy Spectroscopic Instrument (DESI) complete calibration of the colour–redshift relation (DC3R2) secondary target survey. Our analysis uses 230 k galaxies that overlap with KiDS-VIKING ugriZYJHK s photometry to calibrate the colour–redshift relation and to inform photometric redshift (photo-z) inference methods of future weak lensing surveys. Together with emission line galaxies (ELGs), luminous red galaxies (LRGs), and the Bright Galaxy Survey (BGS) that provide samples of complementary colour, the DC3R2 targets help DESI to span 56 percent of the colour space visible to Euclid and LSST with high confidence spectroscopic redshifts. The effects of spectroscopic completeness and quality are explored, as well as systematic uncertainties introduced with the use of common Self-Organizing Maps trained on different photometry than the analysis sample. We further examine the dependence of redshift on magnitude at fixed colour, important for the use of bright galaxy spectra to calibrate redshifts in a fainter photometric galaxy sample. We find that noise in the KiDS-VIKING photometry introduces a dominant, apparent magnitude dependence of redshift at fixed colour, which indicates a need for carefully chosen deep drilling fields, and survey simulation to model this effect for future weak lensing surveys.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

A quantitative comparison between velocity dependent SIDM cross-sections constrained by the gravothermal and isothermal models

One necessary step for probing the nature of self-interacting dark matter (SIDM) particles with astrophysical observations is to pin down any possible velocity dependence in the SIDM cross-section. Major challenges for achieving this goal include eliminating, or mitigating, the impact of the baryonic components and tidal effects within the dark matter halos of interest – the effects of these processes can be highly degenerate with those of dark matter self-interactions at small scales. In this work, we select 9 isolated galaxies and brightest cluster galaxies (BCGs) with baryonic components small enough such that the baryonic gravitational potentials do not significantly influence the halo gravothermal evolution processes. We then constrain the parameters of Rutherford and Møller scattering cross-section models with the measured rotation curves and stellar kinematics through the gravothermal fluid formalism and isothermal method. Cross-sections constrained by the two methods are consistent at $1\sigma$ confidence level, but the isothermal method prefers cross-sections greater than the gravothermal approach constraints by a factor of ~ 3.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

Survey of gravitationally lensed objects in HSC imaging (SuGOHI) – X. Strong lens finding in the HSC-SSP using convolutional neural networks

ABSTRACT We apply a novel model based on convolutional neural networks (CNN) to identify gravitationally lensed galaxies in multiband imaging of the Hyper Suprime-Cam Subaru Strategic Program (HSC-SSP) Survey. The trained model is applied to a parent sample of 2350 061 galaxies selected from the $\sim$ 800 deg$^2$ Wide area of the HSC-SSP Public Data Release 2. The galaxies in HSC Wide are selected based on stringent pre-selection criteria, such as multiband magnitudes, stellar mass, star formation rate, extendedness limit, photometric redshift range, etc. The trained CNN assigns a score from 0 to 1, with 1 representing lenses and 0 representing non-lenses. Initially, the CNN selects a total of 20 241 cutouts with a score greater than 0.9, but this number is subsequently reduced to 1522 cutouts after removing definite non-lenses for further visual inspection. We discover 43 grade A (definite) and 269 grade B (probable) strong lens candidates, of which 97 are completely new. In addition, we also discover 880 grade C (possible) lens candidates, 289 of which are known systems in the literature. We identify 143 candidates from the known systems of grade C that had higher confidence in previous searches. Our model can also recover 285 candidate galaxy-scale lenses from the Survey of Gravitationally lensed Objects in HSC Imaging (SuGOHI), where a single foreground galaxy acts as the deflector. Even though group-scale and cluster-scale lens systems are not included in the training, a sample of 32 SuGOHI-c (i.e. group/cluster-scale systems) lens candidates is retrieved. Our discoveries will be useful for ongoing and planned spectroscopic surveys, such as the Subaru Prime Focus Spectrograph project, to measure lens and source redshifts in order to enable detailed lens modelling.

Jaelani, Anton T. (ORCID:0000000162825778)↗
DOE OSTI2024

Constraints on compact objects from the Dark Energy Survey 5-yr supernova sample

ABSTRACT Gravitational lensing magnification of Type Ia supernovae (SNe Ia) allows information to be obtained about the distribution of matter on small scales. In this paper, we derive limits on the fraction $\alpha$ of the total matter density in compact objects (which comprise stars, stellar remnants, small stellar groupings, and primordial black holes) of mass M > 0.03 ${\rm M}_{\odot }$ over cosmological distances. Using 1532 SNe Ia from the Dark Energy Survey Year 5 sample (DES-SN5YR) combined with a Bayesian prior for the absolute magnitude M, we obtain α < 0.12 at the 95 per cent confidence level after marginalization over cosmological parameters, lensing due to large-scale structure, and intrinsic non-Gaussianity. Similar results are obtained using priors from the cosmic microwave background, baryon acoustic oscillations, and galaxy weak lensing, indicating our results do not depend on the background cosmology. We argue our constraints are likely to be conservative (in the sense of the values we quote being higher than the truth), but discuss scenarios in which they could be weakened by systematics of the order of $\Delta \alpha \sim 0.04$.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

Exploring modified gravity: constraints on the μ and Σ parametrization with WMAP , ACT, and SPT

ABSTRACT The cosmic acceleration problem remains one of the most significant challenges in cosmology. One of the proposed solutions to this problem is the modification of gravity on large scales. In this paper, we explore the well-known μ–Σ parametrization scenarios and confront them with observational data, including the cosmic microwave background (CMB) radiation from the Wilkinson Microwave Anisotropy Probe (WMAP), Atacama Cosmology Telescope (ACT), and South Pole Telescope (SPT), as well as large-scale structure data from the Sloan Digital Sky Survey (SDSS; baryon acoustic oscillation + redshift-space distortion) and Pantheon supernova (SN) catalogue. We employ a Bayesian framework to constrain the model parameters and discuss the implications of our results on the viability of modified gravity theories. Our analysis reveals the strengths and limitations of the μ–Σ parametrization and provides valuable insights into the nature of gravity on cosmological scales. From the joint analysis of the ACT + WMAP + SDSS + SN, we find μ0 − 1 = 0.02 ± 0.19 and Σ0 − 1 = 0.021 ± 0.068 at 68 per cent confidence level (CL). In light of the SPT + WMAP + SDSS + SN, we find μ0 − 1 = 0.07 ± 0.18 and $\Sigma _0 -1 = -0.009^{+0.078}_{-0.11}$ at 68 per cent CL. In all the analyses carried out, we do not find any deviations from the theory of general relativity. Our results represent an observational update on the well-known μ–Σ parametrization in view of current CMB data, independent of and competitive with the constraints obtained with the Planck data.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

The Atacama cosmology telescope: flux upper limits from a targeted search for extragalactic transients

ABSTRACT We have performed targeted searches of known extragalactic transient events at millimetre wavelengths using nine seasons (2013–2021) of 98, 150, and 229 GHz Atacama Cosmology Telescope (ACT) observations that mapped ∼40 per cent of the sky for most of the data volume. Our data cover 88 gamma-ray bursts (GRBs), 12 tidal disruption events (TDEs), and 203 other transients, including supernovae (SNe). We stack our ACT observations to increase the signal-to-noise ratio of the maps. In all cases but one, we do not detect these transients in the ACT data. The single candidate detection (event AT2019ppm), seen at ∼5σ significance in our data, appears to be due to active galactic nuclei activity in the host galaxy coincident with a transient alert. For each source in our search we provide flux upper limits. For example, the medians for the 95 per cent confidence upper limits at 98 GHz are 15, 18, and 16 mJy for GRBs, SNe, and TDEs, respectively, in the first month after discovery. The projected sensitivity of future wide-area cosmic microwave background surveys should be sufficient to detect many of these events using the methods described in this paper.

Hervías-Caimapo, Carlos↗
DOE OSTI2024

Local primordial non-Gaussianity from the large-scale clustering of photometric DESI luminous red galaxies

ABSTRACT We use angular clustering of luminous red galaxies from the Dark Energy Spectroscopic Instrument (DESI) imaging surveys to constrain the local primordial non-Gaussianity parameter fNL. Our sample comprises over 12 million targets, covering 14 000 deg2 of the sky, with redshifts in the range 0.2 < z < 1.35. We identify Galactic extinction, survey depth, and astronomical seeing as the primary sources of systematic error, and employ linear regression and artificial neural networks to alleviate non-cosmological excess clustering on large scales. Our methods are tested against simulations with and without fNL and systematics, showing superior performance of the neural network treatment. The neural network with a set of nine imaging property maps passes our systematic null test criteria, and is chosen as the fiducial treatment. Assuming the universality relation, we find $f_{\rm NL} = 34^{+24(+50)}_{-44(-73)}$ at 68 per cent (95 per cent) confidence. We apply a series of robustness tests (e.g. cuts on imaging, declination, or scales used) that show consistency in the obtained constraints. We study how the regression method biases the measured angular power spectrum and degrades the fNL constraining power. The use of the nine maps more than doubles the uncertainty compared to using only the three primary maps in the regression. Our results thus motivate the development of more efficient methods that avoid overcorrection, protect large-scale clustering information, and preserve constraining power. Additionally, our results encourage further studies of fNL with DESI spectroscopic samples, where the inclusion of 3D clustering modes should help separate imaging systematics and lessen the degradation in the fNL uncertainty.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2025

Accurate shear estimation with fourth-order moments

ABSTRACT As imaging surveys progress in exploring the large-scale structure of the Universe through the use of weak gravitational lensing, achieving sub-per cent accuracy in estimating shape distortions caused by lensing, or shear, is imperative for precision cosmology. In this paper, we extend the Fourier power function shapelets (FPFS) shear estimator using fourth-order shapelet moments and combine it with the original second-order shear estimator to reduce galaxy shape noise. We calibrate this novel shear estimator analytically to a sub-per cent level-accuracy using the AnaCal framework. This higher order shear estimator is tested with realistic image simulations, and after analytical correction for the detection/selection bias and noise bias, the multiplicative shear bias $|m|$ is below $3\times 10^{-3}$ (99.7 per cent confidence interval) for both isolated and blended galaxies. Once combined with the second-order FPFS shear estimator, the shape noise is reduced by $\sim 35~{{\ \rm per\ cent}}$ for isolated galaxies in simulations with Hyper Suprime-Cam and Vera C. Rubin Observatory Legacy Survey of Space and Time observational conditions. However, for blended galaxies, the effective number density does not significantly improve with the combination of the two estimators. Based on these results, we recommend exploration of how this framework can further reduce the systematic uncertainties in shear due to point spread function leakage and modelling error, and potentially provide improved precision in shear inference in high-resolution space-based images.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2025

Forecasting constraints on the high-z IGM thermal state from the Lyman-α forest flux autocorrelation function

ABSTRACT The autocorrelation function of the Lyman-$\alpha$ (Ly $\alpha$) forest flux from high-z quasars probes the small-scale structure of the intergalactic medium (IGM). The thermal state of the IGM, determined by the physics of reionization, sets the small-scale power observed in the Ly $\alpha$ forest. To explore the sensitivity of the autocorrelation function to the IGM’s thermal state, we compute the autocorrelation function from a cosmological hydrodynamical simulation with an instantaneous reionization model and 135 post-processed thermal states. Using mock data sets of 20 quasars, we forecast constraints on $T_0$ and $\gamma$, which characterize the post-processed IGM thermal state, at $5.4 \le z \le 6$. While this model simplifies the IGM’s thermal state, it serves as a key first step in assessing future observational prospects. We also perform an inference test on mocks and re-weight out posterior distributions to guarantee that they exhibit statistically correct behaviour. At $z = 5.4$, we find that an idealized data set constrains $T_0$ to 59 per cent and $\gamma$ to 16 per cent at the 1$\sigma$ equivalent confidence level. To explore more realistic, non-instantaneous reionization scenarios, we analyse four models combining temperature and ultraviolet background (UVB) fluctuations at $z = 5.8$. We find that mock data generated from a model with both temperature and UVB fluctuations can rule out a model with only temperature fluctuations at the $> 1\sigma$ level 73.9 per cent of the time.

Wolfson, Molly↗
DOE OSTI2026

Deep-field analytical calibration

The next generation of imaging surveys, including the Vera C. Rubin Observatory Legacy Survey of Space and Time (LSST), Euclid, and the Nancy Grace Roman Space Telescope, will provide unprecedented constraints on cosmology using weak gravitational lensing. To fully exploit this statistical power, shear measurement methods must achieve sub- per cent accuracy while mitigating systematic biases from noise, the point-spread function (PSF), blending, and shear-dependent detection. The analytical calibration framework (AnaCal) has demonstrated such accuracy but requires adding noise to images, reducing effective depth. We introduce Deep-Field Analytical Calibration (DEEP-FIELD AnaCal), an extension of AnaCal that uses deep-field images to compute shear responses while preserving the statistical power of wide-field data. We validate DEEP-FIELD AnaCal on isolated and blended galaxy image simulations with LSST-like conditions, finding it meets the stringent requirement of multiplicative bias $|m| < 3\times 10^{-3}$ at 99.7 per cent confidence. Compared to standard AnaCal applied to wide-field images, DEEP-FIELD AnaCal increases the effective galaxy number density from 17 to 30 arcmin$^{-2}$ for simulated 10-yr LSST data. With deep fields $10\times$ longer than the wide field, we find pixel noise variance in shear estimation is reduced by 30 per cent and overall uncertainty by $\sim 25~{{\ \rm per\ cent}}$. Finally, using the LSST Deep Drilling Fields strategy, we assess sample variance and find an equivalent calibration uncertainty of $\lesssim 0.3~{{\ \rm per\ cent}}$. These results demonstrate that DEEP-FIELD AnaCal offers a promising path to achieve the required shear calibration for upcoming weak lensing surveys.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

PDBspheres: a method for finding 3D similarities in local regions in proteins

Abstract We present a structure-based method for finding and evaluating structural similarities in protein regions relevant to ligand binding. PDBspheres comprises an exhaustive library of protein structure regions (‘spheres’) adjacent to complexed ligands derived from the Protein Data Bank (PDB), along with methods to find and evaluate structural matches between a protein of interest and spheres in the library. PDBspheres uses the LGA (Local–Global Alignment) structure alignment algorithm as the main engine for detecting structural similarities between the protein of interest and template spheres from the library, which currently contains >2 million spheres. To assess confidence in structural matches, an all-atom-based similarity metric takes side chain placement into account. Here, we describe the PDBspheres method, demonstrate its ability to detect and characterize binding sites in protein structures, show how PDBspheres—a strictly structure-based method—performs on a curated dataset of 2528 ligand-bound and ligand-free crystal structures, and use PDBspheres to cluster pockets and assess structural similarities among protein binding sites of 4876 structures in the ‘refined set’ of the PDBbind 2019 dataset.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Optical follow-up observation for GW event S190510g using Subaru/Hyper Suprime-Cam

Abstract A gravitational wave event, S190510g, which was classified as a binary-neutron-star coalescence at the time of preliminary alert, was detected by LIGO/Virgo collaboration on 2019 May 10. At 1.7 hours after the issue of its preliminary alert, we started a target-of-opportunity imaging observation in the Y band to search for its optical counterpart using the Hyper Suprime-Cam (HSC) on the Subaru Telescope. The observation covers a 118.8 deg2 sky area corresponding to $11.6\%$ confidence in the localization skymap released in the preliminary alert and $1.2\%$ in the updated skymap. We divided the observed area into two fields based on the availability of HSC reference images. For the fields with the HSC reference images, we applied an image subtraction technique; for the fields without the HSC reference images, we sought individual HSC images by matching a catalog of observed objects with the PS1 catalog. The search depth is 22.28 mag in the former method and the limit of search depth is 21.3 mag in the latter method. Subsequently, we performed visual inspection and obtained 83 candidates using the former method and 50 candidates using the latter method. Since we only have the one-day photometric data, we evaluated the probability of candidates being located inside the 3D skymap by estimating their distances with photometry of associated extended objects. We found three candidates are likely located inside the 3D skymap and concluded they could be a counterpart of S190510g, while most of the 133 candidates were likely to be supernovae because the number density of candidates was consistent with the expected number of supernova detections. By comparing our observational depth with a light-curve model of such a kilonova reproducing AT2017gfo, we show that early deep observations with the Subaru/HSC can capture the rising phase of the blue component of a kilonova at the estimated distance of S190510g (∼230 Mpc).

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Co-expression networks in Chlamydomonas reveal significant rhythmicity in batch cultures and empower gene function discovery

The unicellular green alga Chlamydomonas reinhardtii is a choice reference system for the study of photosynthesis and chloroplast metabolism, cilium assembly and function, lipid and starch metabolism, and metal homeostasis. Despite decades of research, the functions of thousands of genes remain largely unknown, and new approaches are needed to categorically assign genes to cellular pathways. Growing collections of transcriptome and proteome data now allow a systematic approach based on integrative co-expression analysis. We used a dataset comprising 518 deep transcriptome samples derived from 58 independent experiments to identify potential co-expression relationships between genes. We visualized co-expression potential with the R package corrplot, to easily assess co-expression and anti-correlation between genes. We extracted several hundred high-confidence genes at the intersection of multiple curated lists involved in cilia, cell division, and photosynthesis, illustrating the power of our method. Surprisingly, Chlamydomonas experiments retained a significant rhythmic component across the transcriptome, suggesting an underappreciated variable during sample collection, even in samples collected in constant light. Our results therefore document substantial residual synchronization in batch cultures, contrary to assumptions of asynchrony. We provide step-by-step protocols for the analysis of co-expression across transcriptome data sets from Chlamydomonas and other species to help foster gene function discovery.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

The metabolic origins of non-photorespiratory CO 2 release during photosynthesis: a metabolic flux analysis

Respiration in the light (R L ) releases CO 2 in photosynthesizing leaves and is a phenomenon that occurs independently from photorespiration. Since R L lowers net carbon fixation, understanding R L could help improve plant carbon-use efficiency and models of crop photosynthesis. Although R L was identified more than 75 years ago, its biochemical mechanisms remain unclear. To identify reactions contributing to R L , we mapped metabolic fluxes in photosynthesizing source leaves of the oilseed crop and model plant camelina (Camelina sativa). We performed a flux analysis using isotopic labeling patterns of central metabolites during 13 CO 2 labeling time course, gas exchange, and carbohydrate production rate experiments. To quantify the contributions of multiple potential CO 2 sources with statistical and biological confidence, we increased the number of metabolites measured and reduced biological and technical heterogeneity by using single mature source leaves and quickly quenching metabolism by directly injecting liquid N 2 ; we then compared the goodness-of-fit between these data and data from models with alternative metabolic network structures and constraints. Our analysis predicted that R L releases 5.2 μmol CO2 g –1 FW h –1 of CO 2 , which is relatively consistent with a value of 9.3 μmol CO 2 g –1 FW h –1 measured by CO 2 gas exchange. The results indicated that ≤10% of R L results from TCA cycle reactions, which are widely considered to dominate R L . Further analysis of the results indicated that oxidation of glucose-6-phosphate to pentose phosphate via 6-phosphogluconate (the G6P/OPP shunt) can account for >% of CO 2 released by R L .

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Machine learning-enabled phenotyping for GWAS and TWAS of WUE traits in 869 field-grown sorghum accessions

Abstract Sorghum (Sorghum bicolor) is a model C4 crop made experimentally tractable by extensive genomic and genetic resources. Biomass sorghum is studied as a feedstock for biofuel and forage. Mechanistic modeling suggests that reducing stomatal conductance (gs) could improve sorghum intrinsic water use efficiency (iWUE) and biomass production. Phenotyping to discover genotype-to-phenotype associations remains a bottleneck in understanding the mechanistic basis for natural variation in gs and iWUE. This study addressed multiple methodological limitations. Optical tomography and a machine learning tool were combined to measure stomatal density (SD). This was combined with rapid measurements of leaf photosynthetic gas exchange and specific leaf area (SLA). These traits were the subject of genome-wide association study and transcriptome-wide association study across 869 field-grown biomass sorghum accessions. The ratio of intracellular to ambient CO2 was genetically correlated with SD, SLA, gs, and biomass production. Plasticity in SD and SLA was interrelated with each other and with productivity across wet and dry growing seasons. Moderate-to-high heritability of traits studied across the large mapping population validated associations between DNA sequence variation or RNA transcript abundance and trait variation. A total of 394 unique genes underpinning variation in WUE-related traits are described with higher confidence because they were identified in multiple independent tests. This list was enriched in genes whose Arabidopsis (Arabidopsis thaliana) putative orthologs have functions related to stomatal or leaf development and leaf gas exchange, as well as genes with nonsynonymous/missense variants. These advances in methodology and knowledge will facilitate improving C4 crop WUE.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Phenotyping stomatal closure by thermal imaging for GWAS and TWAS of water use efficiency-related genes

Abstract Stomata allow CO2 uptake by leaves for photosynthetic assimilation at the cost of water vapor loss to the atmosphere. The opening and closing of stomata in response to fluctuations in light intensity regulate CO2 and water fluxes and are essential for maintaining water-use efficiency (WUE). However, a little is known about the genetic basis for natural variation in stomatal movement, especially in C4 crops. This is partly because the stomatal response to a change in light intensity is difficult to measure at the scale required for association studies. Here, we used high-throughput thermal imaging to bypass the phenotyping bottleneck and assess 10 traits describing stomatal conductance (gs) before, during and after a stepwise decrease in light intensity for a diversity panel of 659 sorghum (Sorghum bicolor) accessions. Results from thermal imaging significantly correlated with photosynthetic gas exchange measurements. gs traits varied substantially across the population and were moderately heritable (h2 up to 0.72). An integrated genome-wide and transcriptome-wide association study identified candidate genes putatively driving variation in stomatal conductance traits. Of the 239 unique candidate genes identified with the greatest confidence, 77 were putative orthologs of Arabidopsis (Arabidopsis thaliana) genes related to functions implicated in WUE, including stomatal opening/closing (24 genes), stomatal/epidermal cell development (35 genes), leaf/vasculature development (12 genes), or chlorophyll metabolism/photosynthesis (8 genes). These findings demonstrate an approach to finding genotype-to-phenotype relationships for a challenging trait as well as candidate genes for further investigation of the genetic basis of WUE in a model C4 grass for bioenergy, food, and forage production.

54 ENVIRONMENTAL SCIENCES↗