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At least 1,693 records · Page 94

Status report, June 1988 - April 1992

The Mars Mission Research Center (MMRC) is one of nine University Space Engineering Research Centers established in June 1988 by NASA's Office of Aeronautics and Space Technology to broaden the nation's engineering capability to meet the critical needs fo the civilian space program. It includes North Carolina State University (NCSU) at Raleigh and on North Carolina A&T State University at Greensboro. The goal of the Center is to focus on research and educational technologies necessary for planetary exploration, especially transportation to and from our moon and Mars. The research combines mission analysis and design, hypersonic aerodynamics, structures and controls, composite materials, and fabrications. Covered here are activities of the Center from June to April 1992. The Center supports 26 graduate students, 29 undergraduates, 27 faculty and 6 staff. An additional 88 undergraduates worked on four special projects. Three facilities at A&T were renovated and a new 7,000 square foot facility was occupied at NCSU in October 1991. Five laboratories have been developed for composite processing and fabrication facility (A&T), materials testing (A&T), weaving (NCSU), braiding (NCSU), and structures (NCSU). During the past two years, the Center added a new dimension to its program - special projects which involve analysis, design, construction, and testing. The first two projects were full-scale research models of a Mars aerobrake and the HL-20 Personnel Launch System. Both projects received considerable new coverage and appeared in national publications. Additional projects include a model of a Mars Exclusion Vehicle, an Orbiter Ejector, and a Remotely Operated Vehicle. The Orbiter Ejector is scheduled to fly on Shuttle Flight STS-47 in October 1992. Special projects have increased undergraduate student participation and provided a mechanism for more interaction between the universities, NASA centers, and industries. The faculty developed 26 new courses related to the activities of the Center. They conducted four workshops on interplanetary spacecraft, lunar/Mars aerobrakes, spacecraft controls, and aerodynamic heating. The Outreach Program developed into a significant component of the Center. Faculty and students have conducted 12 tours of facilities and given 67 lectures to schools (grade k-12) and civic organizations.

Source record↗

Construction of a Shallow Underground Low-background Detector for a CTBT Radionuclide Laboratory

The International Monitoring System (IMS) is a verification component of the Comprehensive Nuclear-Test-Ban Treaty (CTBT), and in addition to a series of radionuclide monitoring stations, contains sixteen radionuclide laboratories capable of verification of radionuclide station measurements. This paper presents an overview of a new commercially obtained low-background detector system for radionuclide aerosol measurements recently installed in a shallow (>30 meters water equivalent) underground clean-room facility at Pacific Northwest National Laboratory. Specifics such as low-background shielding materials, active shielding methods, and improvements in sensitivity to IMS isotopes will be covered.

Forrester, Joel B.↗

A genetic toolbox for metabolic engineering of Issatchenkia orientalis

The nonconventional yeast Issatchenkia orientalis can grow under highly acidic conditions and has been explored for production of various organic acids. Yet, its broader application is hampered by the lack of efficient genetic tools to enable sophisticated metabolic manipulations. We recently constructed an episomal plasmid based on the autonomously replicating sequence (ARS) from Saccharomyces cerevisiae (ScARS) in I. orientalis and developed a CRISPR/Cas9 system for multiplexed gene deletions. Here we report three additional genetic tools including: (1) identification of a 0.8 kb centromere-like (CEN-L) sequence from the I. orientalis genome by using bioinformatics and functional screening; (2) discovery and characterization of a set of constitutive promoters and terminators under different culture conditions by using RNA-Seq analysis and a fluorescent reporter; and (3) development of a rapid and efficient in vivo DNA assembly method in I. orientalis, which exhibited ~100% fidelity when assembling a 7 kb-plasmid from seven DNA fragments ranging from 0.7 kb to 1.7 kb. As evidence of concept, we used these genetic tools to rapidly construct a functional xylose utilization pathway in I. orientalis.

59 BASIC BIOLOGICAL SCIENCES↗

Data from A Genetic Toolbox for Metabolic Engineering of Issatchenkia orientalis

The nonconventional yeast Issatchenkia orientalis can grow under highly acidic conditions and has been explored for production of various organic acids. However, its broader application is hampered by the lack of efficient genetic tools to enable sophisticated metabolic manipulations. We recently constructed an episomal plasmid based on the autonomously replicating sequence (ARS) from Saccharomyces cerevisiae (ScARS) in I. orientalis and developed a CRISPR/Cas9 system for multiplexed gene deletions. Here we report three additional genetic tools including: (1) identification of a 0.8 kb centromere-like (CEN-L) sequence from the I. orientalis genome by using bioinformatics and functional screening; (2) discovery and characterization of a set of constitutive promoters and terminators under different culture conditions by using RNA-Seq analysis and a fluorescent reporter; and (3) development of a rapid and efficient in vivo DNA assembly method in I. orientalis , which exhibited ~100% fidelity when assembling a 7 kb-plasmid from seven DNA fragments ranging from 0.7 kb to 1.7 kb. As proof of concept, we used these genetic tools to rapidly construct a functional xylose utilization pathway in I. orientalis .

Conversion↗

RRNPP-type quorum-sensing systems regulate solvent formation, sporulation and cell motility in Clostridium saccharoperbutylacetonicum

Abstract Background Clostridium saccharoperbutylacetonicum N1-4 (HMT) is a strictly anaerobic, spore-forming Gram-positive bacterium capable of hyper-butanol production through the well-known acetone–butanol–ethanol fermentation process. Recently, five putative RRNPP-type QSSs (here designated as QSS1 to QSS5) were predicted in this bacterial strain, each of which comprises a putative RRNPP-type regulator (QssR1 to QssR5) and a cognate signaling peptide precursor (QssP1 to QssP5). In addition, both proteins are encoded by the same operon. The functions of these multiple RRNPP-type QSSs are unknown. Results To elucidate the function of multiple RRNPP-type QSSs as related to cell metabolism and solvent production in N1-4 (HMT), we constructed qssR -deficient mutants ΔR1, ΔR2, ΔR3 and ΔR5 through gene deletion using CRISPR–Cas9 and N1-4-dcas9-R4 (with the QssR4 expression suppressed using CRISPR–dCas9). We also constructed complementation strains by overexpressing the corresponding regulator gene. Based on systematic characterization, results indicate that QSS1, QSS2, QSS3, and QSS5 positively regulate the sol operon expression and thus solvent production, but they likely negatively regulate cell motility. Consequently, QSS4 might not directly regulate solvent production, but positively affect cell migration. In addition, QSS3 and QSS5 appear to positively regulate sporulation efficiency. Conclusions Our study provides the first insights into the roles of multiple RRNPP-type QSSs of C. saccharoperbutylacetonicum for the regulation of solvent production, cell motility, and sporulation. Results of this study expand our knowledge of how multiple paralogous QSSs are involved in the regulation of essential bacterial metabolism pathways.

09 BIOMASS FUELS↗

Programming in a proposed 9X distributed Ada

The studies of the proposed Ada 9X constructs for distribution, now referred to as AdaPT are reported. The goals for this time period were to revise the chosen example scenario and to begin studying about how the proposed constructs might be implemented. The example scenario chosen is the Submarine Combat Information Center (CIC) developed by IBM for the Navy. The specification provided by IBM was preliminary and had several deficiencies. To address these problems, some changes to the scenario specification were made. Some of the more important changes include: (1) addition of a system database management function; (2) addition of a fourth processing unit to the standard resources; (3) addition of an operator console interface function; and (4) removal of the time synchronization function. To implement the CIC scenario in AdaPT, the decided strategy were publics, partitions, and nodes. The principle purpose for implementing the CIC scenario was to demonstrate how the AdaPT constructs interact with the program structure. While considering ways that the AdaPt constructs might be translated to Ada 83, it was observed that the partition construct could reasonably be modeled as an abstract data type. Although this gives a useful method of modeling partitions, it does not at all address the configuration aspects on the node construct.

Waldrop, Raymond S.↗

MultiFacet: A Faceted Interface for Browsing Large Multimedia Collections

Faceted browsing is a common technique for exploring collections where the data can be grouped into a number of pre-defined categories, most often generated from textual metadata. Historically, faceted browsing has been applied to a single data type such as text or image data. However, typical collections contain multiple data types, such as information from web pages that contain text, images, and video. Additionally, when browsing a collection of images and video, facets are often created based on the metadata which may be incomplete, inaccurate, or missing altogether instead of the actual visual content contained within those images and video. In this work we address these limitations by presenting MultiFacet, a faceted browsing interface that supports multiple data types. MultiFacet constructs facets for images and video in a collection from the visual content using computer vision techniques. These visual facets can then be browsed in conjunction with text facets within a single interface to reveal relationships and phenomena within multimedia collections. Additionally, we present a use case based on real-world data, demonstrating the utility of this approach towards browsing a large multimedia data collection.

content-based image retrieval↗

Determining True Sensor Spatial Resolution of Very High Resolution Optical Imagery

Some satellite data is delivered in images with gridded pixels. This gridded pixel size is often assumed to be the spatial resolution of the satellite sensor; however, this is not always the case. An image can be grided to any arbitrary pixel size, but the sensor resolution will remain constant. For example, an image with a pixel grid size much smaller than the sensor resolution will appear blurry along what should be sharp transitions. This discrepancy between an image’s pixel size and true sensor spatial resolution can be the source of much confusion and even misinformation among data users, which may lead them to waste time and resources on using images that do not suit their spatial resolution needs. This presentation will highlight our evaluation of the true spatial resolution of various government and commercial images in the pixel size range of 0.3 m to 60 m. Images evaluated include ESA’s Sentinel-2 (60 m, 20 m, 10 m pixels), USGS’s Landsat 8/9 (30 m & 15 m pixels), Planet’s SuperDoves (3 m pixels), BlackSky’s Globals (~1 m pixels), and the optical bands of Maxar’s WorldView-2 (2.4 m – 0.41 m pixels) and WorldView-3 (1.38 m – 0.31 m pixels). Our evaluation of true sensor spatial resolution, or ‘footprint size’ is based on the sensor’s line spread function (LSF). We calculate the width at half the height of the LSF to find the full width at half maximum (FWHM). The FWHM is how we report sensor spatial resolution. Different objects are examined for constructing the LSF depending on the sensor spatial resolution. Coarser resolution sensors in this evaluation such as Sentinel-2 and Landsat 8/9 are examined at bridges over a dark water background. The bright bridge acts as a line impulse, giving a sensor’s line spread function (LSF) in one direction. Additionally, we simulate the impacts of bridge width on the apparent LSF to obtain a true LSF without the effects of bridge width for these sensors. Finer resolution sensors will image the irregularities in bridges such as trusses, sidewalks, and in some cases painted lines, interfering with the LSF construction. Instead, these sensors are evaluated at large (60 m – 140 m) black and white checkerboards known as Cal/Val sites. At these locations, the image’s transition from black to white is extracted as an edge spread function (ESF). We calculate the derivative of this ESF to obtain the sensor’s LSF. From there, we find the FWHM as we do for the coarser resolution images. With the FWHM and pixel size, we determine how over- or under-sampled the images are. When the ratio of a sensor’s spatial resolution and the gridded image’s pixel size is less than 1, the image is considered under-sampled. In this case, each pixel’s information is unique but only a portion of that pixel’s ground area has been measured. On the other side, if the ratio is greater than 1, the image is considered over-sampled. That is, each pixel’s information is sourced from within the ground extent of the pixel and some extent outside additionally. We will show the true spatial resolution and the extent of over-/under-sampling in the imagery from ESA’s Sentinel-2 (60 m, 20 m, 10 m pixels), USGS’s Landsat 8/9 (30 m & 15 m pixels), Planet’s SuperDoves (3 m pixels), BlackSky’s Globals (~1 m pixels), and the optical bands of Maxar’s WorldView-2 (2.4 m – 0.41 m pixels) and WorldView-3 (1.38 m – 0.31 m pixels).

Alana Semple↗

General integrable n-level, many-mode Janes-Cummings-Dicke models and classical r-matrices with spectral parameters

Using the technique of classical r-matrices and quantum Lax operators, we construct the most general form of the quantum integrable “n-level, many-mode” spin-boson Jaynes-Cummings-Dicke-type hamiltonians describing an interaction of a molecule of N n-level atoms with many modes of electromagnetic field and containing, in general, additional non-linear interaction terms. We explicitly obtain the corresponding quantum Lax operators and spin-boson analogs of the generalized Gaudin hamiltonians and prove their quantum commutativity. We investigate symmetries of the obtained models that are associated with the geometric symmetries of the classical r-matrices and construct the corresponding algebra of quantum integrals. We consider in detail three classes of non-skew-symmetric classical r-matrices with spectral parameters and explicitly obtain the corresponding quantum Lax operators and Jaynes-Cummings-Dicke-type hamiltonians depending on the considered r-matrix.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

The supersymmetric affine Yangian

The affine Yangian of gl 1 is known to be isomorphic to W 1+∞ , the W-algebra that characterizes the bosonic higher spin — CFT duality. In this paper we propose some of the defining relations of the Yangian that are relevant for the N = 2 superconformal version of W 1+∞ . Our construction is based on the observation that the N = 2 superconformal W 1+∞ algebra contains two commuting bosonic W 1+∞ algebras, and that the additional generators transform in bi-minimal representations with respect to these two algebras. As a result, the corresponding affine Yangian can therefore be built up from two affine Yangians of gl 1 by adding in generators that transform appropriately.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Exact N 3 LO results for qq ' → H + X

We compute the contribution to the total cross section for the inclusive production of a Standard Model Higgs boson induced by two quarks with different flavour in the initial state. Our calculation is exact in the Higgs boson mass and the partonic center-of-mass energy. Here, we describe the reduction to master integrals, the construction of a canonical basis, and the solution of the corresponding differential equations. Our analytic result contains both Harmonic Polylogarithms and iterated integrals with additional letters in the alphabet.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Structure of Rhizobium sp. 4-9 histamine dehydrogenase and analysis of the electron transfer pathway to an abiological electron acceptor

Histamine dehydrogenase from the gram-negative bacterium Rhizobium sp. 4-9 (HaDHR) is a member of a small family of dehydrogenases containing a covalently attached FMN, and the only member so far identified to date that does not exhibit substrate inhibition. Here, in this study, we present the 2.1 Å resolution crystal structure of HaDHR. This new structure allowed for the identification of the internal electron transfer pathway to abiological ferrocene-based mediators. Alanine 437 was identified as the exit point of electrons from the Fe 4 S 4 cluster. The enzyme was modified with a Ser436Cys mutation to facilitate covalent attachment of a ferrocene moiety. When modified with Fc-maleimide, this new construct demonstrated direct electron transfer from the enzyme to a gold electrode in a histamine concentration-dependent manner without the need for any additional electron mediators.

59 BASIC BIOLOGICAL SCIENCES↗

Nondestructive measurements of residual 235 U mass of Israeli Research Reactor-1 fuel using the Advanced Experimental Fuel Counter

In 2018, a measurement campaign took place with participants from Los Alamos National Laboratory (LANL), the Nuclear Research Centre-Negev (NRCN) and Soreq Nuclear Research Center (SNRC) at the Israeli Research Reactor-1 (IRR-1) in which 14 of the reactor’s used fuel assemblies (FAs) with varied amount of depletion were measured with the nondestructive assay instrument Advanced Experimental Fuel Counter (AEFC). Designed for safeguards purposes, the AEFC measures both neutrons emitted from the FA (passive neutrons) and fission neutrons induced by an external neutron source (in this experiment, 252 Cf). Signals recorded with the AEFC include total neutron count rates (Singles), time-correlated neutron count rates (Doubles), and total gamma-ray count rates. The 235 U content of the FAs was previously assessed by two independent methods: (1) measurement of the transparency of the FA to low-energy gamma rays from an activated rhenium source (rhenium gamma transmission, or the RGT method) and (2) calculation of the 30-year burnup history of the core using detailed three-dimensional Monte-Carlo core depletion calculations. The results from the FAs that had been measured via the RGT method were used to construct the calibration curves, which translate the AEFC count rates to 235 U mass. Then, the calibration was evaluated using AEFC measurements of six additional FAs that were not measured via the RGT method. From the results, it was determined the Doubles calibration curve was more reliable than that of the Singles and follows a simple second-order polynomial fit for the whole range of residual 235 U mass content, albeit with larger statistical uncertainty. Detailed uncertainties quantification was conducted for both the AEFC Singles and Doubles. This includes the analysis of statistical uncertainties, calibration uncertainty, and random uncertainties due to the sensitivity of the AEFC to several sources of uncertainty, namely the FA position, FA orientation, interrogation source position, and ambient pool temperature. Finally, an overall total uncertainty of 6 g of 235 U is estimated for the Singles and Doubles, which is mainly due to calibration uncertainty (for the Singles) and statistical uncertainty (for the Doubles), and which constitutes 3%–6% of the 235 U total mass in the FAs, depending on their level of depletion.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Machine learning for nonintrusive model order reduction of the parametric inviscid transonic flow past an airfoil

Fluid flow in the transonic regime finds relevance in aerospace engineering, particularly in the design of commercial air transportation vehicles. Computational fluid dynamics models of transonic flow for aerospace applications are computationally expensive to solve because of the high degrees of freedom as well as the coupled nature of the conservation laws. While these issues pose a bottleneck for the use of such models in aerospace design, computational costs can be significantly minimized by constructing special, structure-preserving surrogate models called reduced-order models. In this work, we propose a machine learning method to construct reduced-order models via deep neural networks and we demonstrate its ability to preserve accuracy with a significantly lower computational cost. In addition, our machine learning methodology is physics-informed and constrained through the utilization of an interpretable encoding by way of proper orthogonal decomposition. Application to the inviscid transonic flow past the RAE2822 airfoil under varying freestream Mach numbers and angles of attack, as well as airfoil shape parameters with a deforming mesh, shows that the proposed approach adapts to high-dimensional parameter variation well. Notably, the proposed framework precludes the knowledge of numerical operators utilized in the data generation phase, thereby demonstrating its potential utility in the fast exploration of design space for diverse engineering applications. Comparison against a projection-based nonintrusive model order reduction method demonstrates that the proposed approach produces comparable accuracy and yet is orders of magnitude computationally cheap to evaluate, despite being agnostic to the physics of the problem.

97 MATHEMATICS AND COMPUTING↗

Neutronics Analyses for the Spallation Neutron Source Second Target Station

The Spallation Neutron Source (SNS) and the High Flux Isotope Reactor (HFIR), two of the word-class neutron scattering facilities, are located at the Oak Ridge National Laboratory. The SNS and HFIR are funded by the U.S. Department of Energy, Office of Science, Office of Basic Energy Science, and are operated as user facilities, available to researchers from all over the world. Currently there are thirteen neutron scattering instruments in operation at the HFIR and twenty at the SNS First Target Station.Producing the cutting edge science requires continuous improvements and development of the facilities and instruments. The SNS was designed from the beginning to allow addition of the Second Target Station (STS), and an upgrade of the accelerator power. At this time both advances: the accelerator upgrade and the construction of the STS are in preparation.Current baseline design for the STS calls for a rotating compact tungsten target. The target station is driven with short (<1 μs) proton pulses at 10 Hz repetition rate and 467 kW proton beam power, and is optimized for high intensity and high resolution long wavelength neutron applications. The proton beam footprint as small as acceptable from the mechanical and heat removal aspects is planned to generate a compact-volume neutron production zone in the target, which is essential for tight coupling of the target and the moderators and for achieving high-intensity peak thermal and cold neutron fluxes. The STS will allow operation of approximately 22 beamlines and will expand and complement the current national neutron scattering capabilities.This paper will present an update of the status of the neutronics analyses performed for the STS and will discuss the performance of the moderators, heating rates, activation analyses, and shielding calculations which provide input in the engineering design.

Remec, Igor↗

Engineering microalgal cell wall-anchored proteins using GP1 PPSPX motifs and releasing with intein-mediated fusion

AbstractHarnessing and controlling the localization of recombinant proteins is critical for advancing applications in synthetic biology, industrial biotechnology, and drug delivery. This study explores protein anchoring and controlled release inChlamydomonas reinhardtii, providing innovative tools for these fields. Using truncated variants of the GP1 glycoprotein fused to the plastic-degrading enzyme PHL7, we identified the PPSPX motif as essential for anchoring proteins to the cell wall. Constructs with increased PPSPX content exhibited reduced secretion but improved anchoring, pinpointing the potential anchor-signal sites of GP1 and highlighting the distinct roles of these motifs in protein localization. Building on the anchoring capabilities established with these glycomodules, we also demonstrated a controlled release system using a pH-sensitive intein derived from RecA fromMycobacterium tuberculosis. This intein efficiently cleaved and released PHL7 and mCherry that was fused to GP1 under acidic conditions, enabling precise temporal and environmental control. At pH 5.5, fluorescence kinetics demonstrated significant mCherry release from the pJPW4mCherry construct within 4 hours. In contrast, release was minimal under pH 8.0 conditions and negligible for the pJPW2mCherry (W2) control, irrespective of the pH. Additionally, bands on the Western blot at the expected size of mCherry also showed its efficient release from the mCherry::intein::GP1 fusion protein at pH 5.5. Conversely, at pH 8.0, no bands were detected. This anchor-release approach offers significant potential for drug delivery, biocatalysis, and environmental monitoring applications. By integrating glycomodules and pH-sensitive inteins, this study establishes a versatile framework for optimizing protein localization and release inC. reinhardtii, with broad implications for proteomics, biofilm engineering, and scalable therapeutic delivery systems.Graphical Abstract

Kang, Kalisa (ORCID:0009000619398129)↗

Real-time estimators for scattering observables: A full account of finite-volume errors for quantum simulation

The real-time correlators of quantum field theories can be directly probed through new approaches to simulation, such as quantum computing and tensor networks. This provides a new framework for computing scattering observables in lattice formulations of strongly interacting theories, such as lattice quantum chromodynamics. In this paper, we prove that the proposal of real-time estimators of scattering observables is universally applicable to all scattering observables of gapped quantum field theories. All finite-volume errors are exponentially suppressed, and the rate of this suppression is controlled by the regulator considered, namely, a displacement of the spectrum of the theory into the complex plane. A partial restoration of Lorentz symmetry by averaging over different boosts gives an additional suppression of finite volume errors. Our results also apply to the simulation of wave packet scattering, where a similar averaging is performed to construct the wave packets that regulate the finite volume effects. This result represents a necessary key step toward determining a broad class of scattering observables via quantum computing that are currently inaccessible via classical computing. Such observables are relevant for various applications, including hadron spectroscopy, hadron structure, and precision tests of the Standard Model. We also comment on potential applications of our results to traditional computational schemes.

Burbano, Ivan M. [University of California, Berkel↗