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SU-E-I-66: Radiomics and Image Registration Updates for the Computational Environment for Radiotherapy Research (CERR)

Purpose: To present new tools in CERR for Radiomics, image registration and other software updates and additions. Methods: Radiomics: CERR supports generating 3-D texture metrics based on gray scale co-occurance. Two new ways to calculate texture features were added: (1) Local Texture Averaging: Local texture is calculated around a voxel within the userdefined bounding box. The final texture metrics are the average of local textures for all the voxels. This is useful to detect any local texture patterns within an image. (2) Image Smoothing: A convolution ball of user-defined radius is rolled over an image to smooth out artifacts. The texture metrics are then computed on the smooth image. Image Registration: (1) Support was added to import deformation vector fields as well as non-deformable transformation matrices generated by vendor software and stored in standard DICOM format. (2) Support was added to use image within masks while computing image deformations. CT to MR registration is supported. This registration uses morphological edge information within the images to guide the deformation process. In addition to these features, other noteworthy additions to CERR include (1) Irregularly shaped ROI: This is done by taking intersection between infinitely extended irregular polygons drawn on any of the two views. Such an ROI is more conformal and useful in avoiding any unwanted parts of images that cannot be avoided with the conventional cubic box. The ROI is useful to generate Radiomics metrics. (2) Ability to insert RTDOSE in DICOM format to existing CERR plans. (3) Ability to import multi-frame PET-CT and SPECT-CT while maintaining spatial registration between the two modalities. (4) Ability to compile CERR on Unix-like systems. Results: The new features and updates are available via https://www.github.com/adityaapte/cerr . Conclusion: Features added to CERR increase its utility in Radiomics, Image-Registration and Outcomes modeling.

07 ISOTOPE AND RADIATION SOURCES↗

The FaceBase Consortium: A comprehensive resource for craniofacial researchers

The FaceBase Consortium, funded by the National Institute of Dental and Craniofacial Research, National Institutes of Health, is designed to accelerate understanding of craniofacial developmental biology by generating comprehensive data resources to empower the research community, exploring high-throughput technology, fostering new scientific collaborations among researchers and human/computer interactions, facilitating hypothesis-driven research, and translating science into improved health care to benefit patients. The resources generated by the FaceBase projects include a number of dynamic imaging modalities, genome-wide association studies, software tools for analyzing human facial abnormalities, detailed phenotyping, anatomical and molecular atlases, global and specific gene expression patterns, and transcriptional profiling over the course of embryonic and postnatal development in animal models and humans. The integrated data visualization tools, faceted search infrastructure, and curation provided by the FaceBase Hub offer flexible and intuitive ways to interact with these multidisciplinary data. In parallel, the datasets also offer unique opportunities for new collaborations and training for researchers coming into the field of craniofacial studies. Here we highlight the focus of each spoke project and the integration of datasets contributed by the spokes to facilitate craniofacial research.

60 APPLIED LIFE SCIENCES↗

Possible inverse cascade behavior for drift-wave turbulence

The turbulent spectral properties of the dynamical equation of Hasegawa and Mima (1978) governing the evolution of the electrostatic potential in drift-wave turbulence is investigated for two formulations of the problem: (1) as a nondissipative initial value problem, with the potential represented by a truncated Fourier series with large number of terms, and (2) as a dissipative problem with a small viscous dissipation at very short spatial scales, and a long wavelength forcing term at longer wavelengths. It is found that Hasegawa and Mima's prediction for the nondissipative, truncated initial value modal problem is accurate, but substantial differences exist for the forced dissipative case between computer results and analytical predictions based on a wave kinetic equation of Kadomtsev. Much better agreement is found with a simple dual-cascade model based on Kraichnan's generalization of Kolmogorov's cascade arguments.

Fyfe, D.↗

Simulation and testing of digital control on a flexible beam

Large space structures are expected to have control problems due to low stiffness and damping, and control laws for these structures must deal with shape and configuration control as well as attitude and orbit maintenance. In general, these control tasks must be accomplished without adversely interacting with the lightly damped and low frequency vibration modes of the structure. Modal control schemes have been proposed to deal with these problems. A discrete time parameter adaptive control scheme which uses modal control has been proposed by Montgomery and Johnson (1978). In the present investigation the method considered by Montgomery and Johnson is applied to a homogeneous free-free beam in both numerical simulation and laboratory experimentation. Mathematical modeling of the beam is treated in a manner expedient for digital simulation and control implementation.

Williams, J. P.↗

Unsteady transonic flow calculations for wing-fuselage configurations

Unsteady transonic flow calculations are presented for wing-fuselage configurations. Calculations are performed by extending the XTRAN3S unsteady transonic small-disturbance code to allow the treatment of a fuselage. Details of the XTRAN3S fuselage modeling are discussed in the context of the small-disturbance equation. Transonic calculations are presented for three wing-fuselage configurations with leading edge sweep angles ranging from 0 deg to 46.76 deg. Simple bending and torsion modal oscillations of the wing are calculated. Sectional lift and moment coefficients for the wing-alone and wing-fuselage cases are compared and the effects of fuselage aerodynamic interference on the unsteady wing loading are revealed. Tabulated generalized aerodynamic forces used in flutter analyses, indicate small changes in the real in-phase component and as much as a 30% change in the imaginary component when the fuselage is included in the calculation. These changes result in a 2 to 5% increase in total magnitude and a several degree increase in phase.

Batina, J. T.↗

Developing disturbances in shear

The origin and growth to moderate amplitude of disturbances in shear flow has been traditionally ascribed to the linear modal instability of the flow. Recent work on initial value problems has suggested that nonmodal growth of perturbations may be of equal and perhaps greater importance, at least in cases of rapid development. Examples of robust growth in model problems which support no instabilities and in baroclinic flows with realistic Ekman damping for which the exponential modes have zero or negative growth rates have been shown. Such examples have focused attention on the perturbations which are configured to tap the energy of mean flows. Here a critical examination of these favorably configured perturbations is given, making use of the simple constant free shear barotropic model which allows construction of exact two-dimensional isolated wave packet solutions.

Farrell, Brian↗

Adaptive Control of Flexible Structures Using Residual Mode Filters

Flexible structures containing a large number of modes can benefit from adaptive control techniques which are well suited to applications that have unknown modeling parameters and poorly known operating conditions. In this paper, we focus on a direct adaptive control approach that has been extended to handle adaptive rejection of persistent disturbances. We extend our adaptive control theory to accommodate troublesome modal subsystems of a plant that might inhibit the adaptive controller. In some cases the plant does not satisfy the requirements of Almost Strict Positive Realness. Instead, there maybe be a modal subsystem that inhibits this property. This section will present new results for our adaptive control theory. We will modify the adaptive controller with a Residual Mode Filter (RMF) to compensate for the troublesome modal subsystem, or the Q modes. Here we present the theory for adaptive controllers modified by RMFs, with attention to the issue of disturbances propagating through the Q modes. We apply the theoretical results to a flexible structure example to illustrate the behavior with and without the residual mode filter. We have proposed a modified adaptive controller with a residual mode filter. The RMF is used to accommodate troublesome modes in the system that might otherwise inhibit the adaptive controller, in particular the ASPR condition. This new theory accounts for leakage of the disturbance term into the Q modes. A simple three-mode example shows that the RMF can restore stability to an otherwise unstable adaptively controlled system. This is done without modifying the adaptive controller design.

Balas, Mark J.↗

Improved Pyrotechnic Shock Scaling Method Based on Shock Response Spectrum and Statistical Energy Analysis

It has been more than forty years since the pyrotechnic shock scaling method was introduced. The scaling method estimates the attenuation of the Shock Response Spectrum (SRS) based on the distance from the source, structural configurations, types of structural joints and interfaces, and intervening structure [1]. The method has been successfully used in the spacecraft community countless times and still is frequently used to develop pyrotechnic shock requirements at various levels of assembly of a spacecraft. However, since the method was derived empirically from a limited set of shock test data [2], the aerospace community has been looking for an alternative approach. In this paper, a computational scaling method based on Statistical Energy Analysis (SEA) is re-visited. SEA is traditionally used as a method for investigating the diffusion of acoustic and vibratory energies of a system at steady-state [3]. Previously, an approach using the SRS as an acceleration constraint condition to the SEA model was introduced to estimate the attenuation from a shock source [4,5]. In the current investigation, additional examples are provided to further validate the approach. In addition, responses in the time domain are produced by the Local Modal Phase Reconstruction (LMPR) approach which was recently introduced to the community [6].

Fernandez, Juan P.↗

Electron contamination modeling and skin dose in 6 MV longitudinal field MRIgRT: Impact of the MRI and MRI fringe field

Purpose: In recent times, longitudinal field MRI-linac systems have been proposed for 6 MV MRI-guided radiotherapy (MRIgRT). The magnetic field is parallel with the beam axis and so will alter the transport properties of any electron contamination particles. The purpose of this work is to provide a first investigation into the potential effects of the MR and fringe magnetic fields on the electron contamination as it is transported toward a phantom, in turn, providing an estimate of the expected patient skin dose changes in such a modality. Methods: Geant4 Monte Carlo simulations of a water phantom exposed to a 6 MV x-ray beam were performed. Longitudinal magnetic fields of strengths between 0 and 3 T were applied to a 30 x 30 x 20 cm{sup 3} phantom. Surrounding the phantom there is a region where the magnetic field is at full MRI strength, consistent with clinical MRI systems. Beyond this the fringe magnetic field entering the collimation system is also modeled. The MRI-coil thickness, fringe field properties, and isocentric distance are varied and investigated. Beam field sizes of 5 x 5, 10 x 10, 15 x 15 and 20 x 20 cm{sup 2} were simulated. Central axis dose, 2D virtual entry skin dose films, and 70 {mu}m skin depth doses were calculated using high resolution scoring voxels. Results: In the presence of a longitudinal magnetic field, electron contamination from the linear accelerator is encouraged to travel almost directly toward the patient surface with minimal lateral spread. This results in a concentration of electron contamination within the x-ray beam outline. This concentration is particularly encouraged if the fringe field encompasses the collimation system. Skin dose increases of up to 1000% were observed for certain configurations and increases above Dmax were common. In nonmagnetically shielded cases, electron contamination generated from the jaw faces and air column is trapped and propagated almost directly to the phantom entry region, giving rise to intense dose hot spots inside the x-ray treatment field. These range up to 1000% or more of Dmax at the CAX, depending on field size, isocenter, and coil thickness. In the case of a fully magnetically shielded collimation system and the lowest MRI field of 0.25 T, the entry skin dose is expected to increase to at least 40%, 50%, 65%, and 80% of Dmax for 5 x 5, 10 x 10, 15 x 15, and 20 x 20 cm{sup 2}, respectively. Conclusions: Electron contamination from the linac head and air column may cause considerable skin dose increases or hot spots at the beam central axis on the entry side of a phantom or patient in longitudinal field 6 MV MRIgRT. This depends heavily on the properties of the magnetic fringe field entering the linac beam collimation system. The skin dose increase is also related to the MRI-coil thickness, the fringe field, and the isocenter distance of the linac. The results of this work indicate that the properties of the MRI fringe field, electron contamination production, and transport must be considered carefully during the design stage of a longitudinal MRI-linac system.

43 PARTICLE ACCELERATORS↗

SU-E-T-381: Radio-Dynamic Therapy (RDT) for the Treatment of Late-Stage Cancers

Purpose: Photo-dynamic therapy (PDT) is an effective treatment modality because of the preferential absorption of photosensitizing agent in tumor cells than in surrounding normal tissues. A limitation of PDT for cancer therapy is the finite penetration of laser light to activate the targeting agent in deep-seated tumors. Radio-dynamic therapy (RDT) is designed to overcome this problem by the combination of high-energy (up to 45MV) photon beams and photo/radio-sensitizers. This work investigates the feasibility of PDT for late-stage cancer patients who are no longer respond to conventional therapies available. Methods: The high-energy photon beams are generated using a LA45 RaceTrack Microtron (Top Grade Medical, Beijing, China). The targeting agent investigated is 5- aminolevulinic acid (5-ALA). Both in vitro cell lines and in vivo animal models have been used to investigate the mechanisms of RDT and its therapeutic effects and normal tissue toxicities. Oral 5-ALA (30-60 mg/kg) was administered 4-6 hours before the radiation treatment and the total radiation dose varied between 0.1-4.0Gy in 1-4 fractions. Clinical trials are initiated in China for late-stage cancer patients targeting both primary tumors utilizing localized therapies such as 3DCRT/IMRT and metastases using TBI. Results: There is clear correlation between the cell death and the 5-ALA concentration/radiation dose. The therapeutic effect of RDT is demonstrated using an animal model where the volume of parotid tumors for the RT only group continued to grow after 3Gy irradiation while the RDT group showed a complete response with the same radiation dose. The preliminary clinical results showed encouraging clinical outcome. Conclusion: RDT is a novel treatment technique that may be developed into an effective cancer treatment modality. Further studies on the mechanisms of RDT and its potential clinical applications are warranted.

60 APPLIED LIFE SCIENCES↗

Effect of reconstruction methods and x-ray tube current–time product on nodule detection in an anthropomorphic thorax phantom: A crossed-modality JAFROC observer study

Purpose: To evaluate nodule detection in an anthropomorphic chest phantom in computed tomography (CT) images reconstructed with adaptive iterative dose reduction 3D (AIDR{sup 3D}) and filtered back projection (FBP) over a range of tube current–time product (mAs). Methods: Two phantoms were used in this study: (i) an anthropomorphic chest phantom was loaded with spherical simulated nodules of 5, 8, 10, and 12 mm in diameter and +100, −630, and −800 Hounsfield units electron density; this would generate CT images for the observer study; (ii) a whole-body dosimetry verification phantom was used to ultimately estimate effective dose and risk according to the model of the BEIR VII committee. Both phantoms were scanned over a mAs range (10, 20, 30, and 40), while all other acquisition parameters remained constant. Images were reconstructed with both AIDR{sup 3D} and FBP. For the observer study, 34 normal cases (no nodules) and 34 abnormal cases (containing 1–3 nodules, mean 1.35 ± 0.54) were chosen. Eleven observers evaluated images from all mAs and reconstruction methods under the free-response paradigm. A crossed-modality jackknife alternative free-response operating characteristic (JAFROC) analysis method was developed for data analysis, averaging data over the two factors influencing nodule detection in this study: mAs and image reconstruction (AIDR{sup 3D} or FBP). A Bonferroni correction was applied and the threshold for declaring significance was set at 0.025 to maintain the overall probability of Type I error at α = 0.05. Contrast-to-noise (CNR) was also measured for all nodules and evaluated by a linear least squares analysis. Results: For random-reader fixed-case crossed-modality JAFROC analysis, there was no significant difference in nodule detection between AIDR{sup 3D} and FBP when data were averaged over mAs [F(1, 10) = 0.08, p = 0.789]. However, when data were averaged over reconstruction methods, a significant difference was seen between multiple pairs of mAs settings [F(3, 30) = 15.96, p < 0.001]. Measurements of effective dose and effective risk showed the expected linear dependence on mAs. Nodule CNR was statistically higher for simulated nodules on images reconstructed with AIDR{sup 3D} (p < 0.001). Conclusions: No significant difference in nodule detection performance was demonstrated between images reconstructed with FBP and AIDR{sup 3D}. mAs was found to influence nodule detection, though further work is required for dose optimization.

60 APPLIED LIFE SCIENCES↗

The simulation of 3D mass models in 2D digital mammography and breast tomosynthesis

Purpose: This work proposes a new method of building 3D breast mass models with different morphological shapes and describes the validation of the realism of their appearance after simulation into 2D digital mammograms and breast tomosynthesis images. Methods: Twenty-five contrast enhanced MRI breast lesions were collected and each mass was manually segmented in the three orthogonal views: sagittal, coronal, and transversal. The segmented models were combined, resampled to have isotropic voxel sizes, triangularly meshed, and scaled to different sizes. These masses were referred to as nonspiculated masses and were then used as nuclei onto which spicules were grown with an iterative branching algorithm forming a total of 30 spiculated masses. These 55 mass models were projected into 2D projection images to obtain mammograms after image processing and into tomographic sequences of projection images, which were then reconstructed to form 3D tomosynthesis datasets. The realism of the appearance of these mass models was assessed by five radiologists via receiver operating characteristic (ROC) analysis when compared to 54 real masses. All lesions were also given a breast imaging reporting and data system (BIRADS) score. The data sets of 2D mammography and tomosynthesis were read separately. The Kendall's coefficient of concordance was used for the interrater observer agreement assessment for the BIRADS scores per modality. Further paired analysis, using the Wilcoxon signed rank test, of the BIRADS assessment between 2D and tomosynthesis was separately performed for the real masses and for the simulated masses. Results: The area under the ROC curves, averaged over all observers, was 0.54 (95% confidence interval [0.50, 0.66]) for the 2D study, and 0.67 (95% confidence interval [0.55, 0.79]) for the tomosynthesis study. According to the BIRADS scores, the nonspiculated and the spiculated masses varied in their degrees of malignancy from normal (BIRADS 1) to highly suggestive for malignancy (BIRADS 5) indicating the required variety of shapes and margins of these models. The assessment of the BIRADS scores for all observers indicated good agreement based on Kendall's coefficient for both the 2D and the tomosynthesis evaluations. The paired analysis of the BIRADS scores between 2D and tomosynthesis for each observer revealed consistent behavior for the real and simulated masses. Conclusions: A database of 3D mass models, with variety of shapes and margins, was validated for the realism of their appearance for 2D digital mammography and for breast tomosynthesis. This database is suitable for use in future observer performance studies whether in virtual clinical trials or in patient images with simulated lesions.

60 APPLIED LIFE SCIENCES↗

Propeller modelling effects on interior noise in cylindrical cavities with application to active control

The coupling of a vibrating finite elastic cylinder and its interior cavity, closed with rigid end caps, is examined. Results are presented for several types of excitation including a point force, a single external acoustic monopole, and an array of external monopoles. Modal spectra are examined for a frequency range typical of the harmonic noise produced by advanced turbo-props. The effect of frequency and source distribution on modal content is presented. Significant interface modal filtering, which would have a beneficial impact on an active system for reducing interior noise, was found to occur for all cases. Some preliminary experimental data for a stiffened, composite cylinder are presented and discussed.

Silcox, R. J.↗

A modal approach to the numerical calculation of primordial non-Gaussianities

We propose a new method to numerically calculate higher-order correlation functions of primordial fluctuations generated from any early-universe scenario. Our key-starting point is the realization that the tree-level In-In formalism is intrinsically separable. This enables us to use modal techniques to efficiently calculate and represent non-Gaussian shapes in a separable form well suited to data analysis. We prove the feasibility and the accuracy of our method by applying it to simple single-field inflationary models in which analytical results are available, and we perform non-trivial consistency checks like the verification of the single field consistency relation. We also point out that the iε prescription is automatically taken into account in our method, preventing the need for ad-hoc tricks to implement it numerically.

79 ASTRONOMY AND ASTROPHYSICS↗

Characterization of fines from the Apollo 16 site

We describe the characteristics of Apollo 16 fines samples 61281,8; 65701,13; 66031,6; 67701,26; and 67712,16 observed microscopically during the course of size and magnetic separations. Sample 67712,16 is unique in that almost all grains are rounded and no glass welded aggregates are present. All samples except 67712,16 contained about 0.5 wt.% of metal fragments 45 microns or more in diameter including occasional spheres and large single crystals. Some of this metal showed rust spots. Moessbauer spectra showed all the samples to be high in olivine compared to samples from other Apollo sites and to vary significantly in modal composition from each other. The fine grained Fe metal content and the excess absorption area near zero velocity in the Moessbauer spectra both vary with particle size and regolith maturity in the way one would predict from our model of Fe metal reduction and agglomeration during glass aggregate formation.

Housley, R. M.↗

Follow on Researches for X-56A Aircraft at NASA Dryden Flight Research Center (Progress Report)

A lot of composite materials are used for the modern aircraft to reduce its weight. Aircraft aeroservoelastic models are typically characterized by significant levels of model parameter uncertainty due to composite manufacturing process. Small modeling errors in the finite element model will eventually induce errors in the structural flexibility and mass, thus propagating into unpredictable errors in the unsteady aerodynamics and the control law design. One of the primary objectives of X-56A aircraft is the flight demonstration of active flutter suppression, and therefore in this study, the identification of the primary and secondary modes is based on the flutter analysis of X-56A aircraft. It should be noted that for all three Mach number cases rigid body modes and mode numbers seven and nine are participated 89.1 92.4 % of the first flutter mode. Modal participation of the rigid body mode and mode numbers seven and nine for the second flutter mode are 94.6 96.4%. Rigid body mode and the first two anti-symmetric modes, eighth and tenth modes, are participated 93.2 94.6% of the third flutter mode. Therefore, rigid body modes and the first four flexible modes of X-56A aircraft are the primary modes during the model tuning procedure. The ground vibration test-validated structural dynamic finite element model of the X-56A aircraft is to obtain in this study. The structural dynamics finite element model of X-56A aircraft is improved using the parallelized big-bang big-crunch algorithm together with a hybrid optimization technique.

Structural Dynamic Model Tuning↗

On the late-time growth of the two-dimensional Richtmyer–Meshkov instability in shock tube experiments [On the late-time growth of the 2D Richtmyer–Meshkov instability in shock tube experiments]

In the present study, shock tube experiments are used to study the very late-time development of the Richtmyer–Meshkov instability from a diffuse, nearly sinusoidal, initial perturbation into a fully turbulent flow. The interface is generated by two opposing gas flows and a perturbation is formed on the interface by transversely oscillating the shock tube to create a standing wave. The puncturing of a diaphragm generates a Mach $1. 2$ shock wave that then impacts a density gradient composed of air and SF 6 , causing the Richtmyer–Meshkov instability to develop in the 2.0 m long test section. The instability is visualized with planar Mie scattering in which smoke particles in the air are illuminated by a Nd:YLF laser sheet, and images are recorded using four high-speed video cameras operating at 6 kHz that allow the recording of the time history of the instability. In addition, particle image velocimetry (PIV) is implemented using a double-pulsed Nd:YAG laser with images recorded using a single CCD camera. Initial modal content, amplitude, and growth rates are reported from the Mie scattering experiments while vorticity and circulation measurements are made using PIV. Amplitude measurements show good early-time agreement but relatively poor late-time agreement with existing nonlinear models. The model of Goncharov agrees with growth rate measurements at intermediate times but fails at late experimental times. Measured background acceleration present in the experiment suggests that the late-time growth rate may be influenced by Rayleigh–Taylor instability induced by the interfacial acceleration. Numerical simulations conducted using the LLNL codes Ares and Miranda show that this acceleration may be caused by the growth of boundary layers, and must be accounted for to produce good agreement with models and simulations. Adding acceleration to the Richtmyer–Meshkov buoyancy–drag model produces improved agreement. It is found that the growth rate and amplitude trends are also modelled well by the Likhachev–Jacobs vortex model. Here, circulation measurements also show good agreement with the circulation value extracted by fitting the vortex model to the experimental data.

42 ENGINEERING↗

TH-F-209-00: Pitfalls: Reliability and Performance of Diagnostic X-Ray Sources

Purpose: Performance and reliability of medical X-ray tubes for imaging are crucial from an ethical, clinical and economic perspective. This lecture will deliver insight into the aspects to consider during the decision making process to invest in X-ray imaging equipment. Outdated metric still hampers realistic product comparison. It is time to change this and to comply with latest standards, which consider current technology. Failure modes and ways to avoid down-time of the equipment shall be discussed. In view of the increasing number of interventional procedures and the hazards associated with ionizing radiation, toxic contrast agents, and the combination thereof, the aspect of system reliability is of paramount importance. Methods: A comprehensive picture of trends for different modalities (CT, angiography, general radiology) has been drawn and led to the development of novel X-ray tube technology. Results: Recent X-ray tubes feature enhanced reliability and unprecedented performance. Relevant metrics for product comparison still have to be implemented in practice. Conclusion: The speed of scientific and industrial development of new diagnostic and therapeutic X-ray sources remains tremendous. Still, users suffer from gaps between desire and reality in day-to-day diagnostic routine. X-ray sources are still limiting cutting-edge medical procedures. Side-effects of wear and tear, limitations of the clinical work flow, costs, the characteristics of the X-ray spectrum and others topics need to be further addressed. New applications and modalities, like detection-based color-resolved X-ray and phase-contrast / dark-field imaging will impact the course of new developments of X-ray sources. Learning Objectives: Understand the basic requirements on medical diagnostic X-ray sources per modality Learn to select the optimal equipment employing state-of-the-art metric Know causes of failures, depending on the way X-ray sources are operated Understand methods to remediate critical situations Understand the meaning of different warranty models I am employee of Royal Philips; R. Behling, No external funding. I am employee of Royal Philips.

61 RADIATION PROTECTION AND DOSIMETRY↗