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At least 1,675 records · Page 93
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Concentrated thermal tuner for optical microdisk devices

A thermally tunable microresonator device with enhanced thermal confinement for greater efficiency is provided. A thermal confinement structure is electrically connected in series with the heater element used for tuning the microresonator. The heater element is conformed in a circular arc concentric with the microresonator, the thermal confinement structure comprises two or more tiers, and each tier comprises at least one metal trace conformed in a circular arc concentric with the microresonator.

Martinez, Nicholas Jacob↗
DOE OSTI2023

Accelerated pattern matching method on a quantum computing system

A method of determining a pattern in a sequence of bits using a quantum computing system includes setting a first register of a quantum processor in a superposition of a plurality of string index states, encoding a bit string in a second register of the quantum processor, encoding a bit pattern in a third register of the quantum processor, circularly shifting qubits of the second register conditioned on the first register, amplifying an amplitude of a state combined with the first register in which the circularly shifted qubits of the second register matches qubits of the third register, measuring an amplitude of the first register and determining a string index state of the plurality of string index states associated with the amplified state, and outputting, by use of a classical computer, a string index associated with the first register in the measured state.

NIROULA, Pradeep↗
DOE OSTI2018

Roll Compaction of Powdered Radioactive Wastes - 18251

Most of low- and intermediate-level radioactive wastes must be solidified by a proper binding matrix and disposed at the centralized disposal site. So it is desirable to achieve a high loading of radwastes in a drum to reduce the disposal fee while meeting both the national regulations and the waste acceptance criteria of the disposal site. In general, the radioactive wastes (liquid, dried powder and sludge) were solidified by mixing with a proper binding matrix (cement, polymer, asphalt, etc.), but their solidified volume inevitably increases due to the limitation of incorporating of radwaste into a binding matrix. To solve this problem, some Korean NPPs operate both a CTS (Concentrate Treatment System, evaporation and granulation) and a polymer solidification system. The size distribution of granulated wastes produced by CTS is so broad (diameter; several μm ∼ several cm) that a polymer cannot impregnate the void space between particles due to their small size. However, if the powdered radwaste can be compacted into high density pellets, and the pellets can be loaded in a drum with maximum waste loading, then the binding matrix can fill the void between pellets, it might be more desirable to keep the size distribution of pellets constant to reduce the solidified waste volume. This compaction methodology can greatly reduce the disposal fee due to the reduction of the solidified waste volume, and can facilitate polymer solidification due to the constant size of the radwaste pellets. This methodology is also applicable to solidify powdered wastes such a depleted uranium used as a catalyst, ash and sludge. Loading radwaste compacted with bentonite pellets versus particles into a container serves, as an engineered or natural barrier in a deep geologic disposal system. Roll compaction is a typical agglomeration process for dry powders and depends on the device parameters and the material properties. This study, firstly, was focused on the design of roll compactor (briquetting machine), the shape and size of pellet, and secondly the loading method of pellets into a drum, their solidification in polymer, and evaluating the overall volume reduction. We used bentonite (particle size; 85 ∼ 100 μm) as a material to be compacted instead of radwaste powders (concentrates and depleted uranium wastes) without the addition of agglomeration agents. In the design of roll, we considered the diameter (200 mm) and width (41 mm) of roll, two types of pocket shapes (< 9 mm, 0.275 ml), and the surface of the pocket. Fig. 2 shows two pellet shapes, tetragonal and circular. The pressure of roll compactor, one of the main process variables, is > 320 kg f/cm{sup 2}, and the roll gap is 0.5 mm. The powders are compacted in a compaction zone between two counter-rotating rolls according to the complicated mechanisms. As a result of the state and the apparent density of the pellets obtained by changing the pressure from 0 to 286 kg f/cm{sup 2}, the pellets were unstable at pressure=0, but above 148 kg f/cm{sup 2} the pellets were more stable, and the apparent density of the pellets was 2.63 g/cm{sup 3} at 148 kg f/cm{sup 3}, and 2.68 g/cm{sup 3} at 286 kg f/cm{sup 2}. The roller speed (rpm) can determine the capacity (kg/h) of a compactor, and depends on both the compaction pressure and the feeding rate. By increasing the roll speed from 2 to 4 rpm, the apparent density of pellets was decreased gradually from 2.74 g/cm{sup 3} to 1.45 g/cm{sup 3}. We designed the special feeding system in order to feed powders uniformly to the roll gripping zone and to supply powders into the narrowest part of the roll gap. At a constant roll speed (3 rpm) and a constant compaction pressure (286 kg f/cm{sup 2}), the apparent density of the pellets was linearly proportional to the feeding rate from 2.18 to 2.74 g/cm{sup 3} by changing the feeding rate of powders from 8 to 12 rpm. In the polymer solidification of the obtained pellets, we used epoxy resin as a solidification agent, and showed their solidified waste forms in Fig. 5. The incorporation ratio (wt.%) of powders/polymer was about 71.7/28.3 in tetragonal pellets, 71.9/28.1 in circular pellets. We calculated the volume reduction in an aspect of powders itself and the solidified waste form. In powder case, through the comparison of the apparent density of the obtained pellets (2.74 g/cm{sup 3}) and raw powders (0.93 g/cm{sup 3}), the volume reduction was calculated as about 2.74/0.93 = 2.95 times. This means that powders can be compacted to 1/2.95 times. And in waste form case, the weight ratio of powder/polymer in a mixing method (workable) and a compaction method is about 0.42, 2.56, individually. Therefore the volume reduction was calculated as about 2.56/0.42 = 6.01 times. We found a compaction methodology for the volume reduction of powdered radioactive wastes, and their polymer solidification will be more effective to reduce the volume of radwastes to be disposed. After a characterization of the solidified waste form incorporated pellets (including sintered pellets), this methodology will be applied to treat depleted uranium wastes used as catalyst, and to solve the problem of NPPs' polymer solidification system, as mentioned above. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2020

Enhanced Sustainability in Treatment of Contaminated Metals for Clearance and Recycling - 20290

Cyclife Sweden AB has, for more than 30 years, provided metal treatment services to the domestic and international nuclear industry with the aim of creating value through metal clearance and recycling. These operations are to a large extent based on the concept that the materials, after pre-treatment, including decontamination, will be melted for clearance. During the melting process, some nuclides separate from the metal while the remaining radioactivity becomes fully homogenized in the metal bath and the resulting ingots, along with the samples taken before casting At a time when activities to fight Climate Challenge are in focus, any savings in energy consumption, in addition to the positive environmental effect of recycling metals back to industry, is more than welcome. If the clearance of certain metallic items can be achieved safely, without using melting, it is the environmentally preferred option provided it carries a reasonable cost. It is even better if an object can go through a decontamination and clearance process prior to re-use inside or outside the nuclear sector. Cyclife Sweden is currently investing in a direct clearance process, to be operated in parallel with the melting process. This new process is expected to be fully operational in the late summer of 2020 and includes pre-treatment, decontamination and heavily shielded clearance measurement installations. The treatment will also allow clearance measurements of larger objects without the need for segmentation, along with allowing objects composed of different materials, like electric motors can be accepted for treatment. This paper gives an overview of the circular economy aspects in a nuclear back-end context, the Cyclife approach to further implement a circular economy approach in the processes, Material Acceptance Criteria for treatment, the facility set-up for the new process and how the melting route and the direct route can be combined in an efficient industrial scale process. To put the new capabilities into perspective, the two different treatment and clearance approaches, i.e. direct clearance and melting, are to be compared. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2024

Encoding of symbols for a computer interconnect based on frequency of symbol values

Data are serially communicated over an interconnect between an encoder and a decoder. The encoder includes a first training unit to count a frequency of symbol values in symbol blocks of a set of N number of symbol blocks in an epoch. A circular shift unit of the encoder stores a set of most-recently-used (MRU) amplitude values. An XOR unit is coupled to the first training unit and the first circular shift unit as inputs and to the interconnect as output. A transmitter is coupled to the encoder XOR unit and the interconnect and thereby contemporaneously sends symbols and trains on the symbols. In a system, a device includes a receiver and decoder that receive, from the encoder, symbols over the interconnect. The decoder includes its own training unit for decoding the transmitted symbols.

SeyedzadehDelcheh, SeyedMohammad↗
DOE OSTI2017

XMCD and XMCD-PEEM Studies on Magnetic-Field-Assisted Self-Assembled 1D Nanochains of Spherical Ferrite Particles

Quasi-1D nanochains of spherical magnetic ferrite particles with a homogeneous particle size of ≈200 nm and a micrometer-sized chain length are fabricated in this paper via a self-assembly method under an external magnetic field. This assisting magnetic field (H assist ), applied during synthesis, significantly modifies the distribution of the Fe 2+ O h , Fe 3+ T d , and Fe 3+ O h cations in the chains, as demonstrated by X-ray magnetic circular dichroism (XMCD) combined with theoretical analysis. This provides direct evidence of the nontrivial role of external synthetic conditions for defining the crystal chemistry of nanoscale ferrites and in turn their magnetic properties, providing an extra degree of freedom for intentional control over the performances of 1D magnetic nanodevices for various applications. Magnetic imaging, performed via XMCD in photoemission electron microscopy, further shows the possibility of creating and trapping a series of adjacent magnetic domain walls in a single chain, suggesting that there is great application potential for these nanochains in 1D magnetic nanodevices, as determined by field- or current-driven domain wall motions. Finally, practical control over the magnetic properties of the nanochains is also achieved by extrinsic dopants of cobalt and zinc, which are observed to occupy the ferrite ionic sites in a selective manner.

1D nanochains↗
DOE OSTI2025

Redefining Design for Remanufacturing: A Practical Methodology for Prioritizing Remanufacturing Design Rules

Products are often discarded when they fail or no longer meet user needs. These outcomes are frequently shaped by early design decisions. While remanufacturing offers a sustainable alternative by restoring products to like‐new condition, its potential is often limited by designs that do not consider remanufacturing from the outset. This research addresses that challenge by introducing a structured Design for Remanufacturing (DfRem) methodology and a CAD‐integrated tool to support real‐time design decisions. The DfRem framework introduces a new primary design function focused on preserving product functionality across its life cycle. It is supported by a fault tree that identifies failure modes that limit remanufacturing potential and a hierarchy of design principles including Prevent, Minimize, Relocate, Restore, and others. Each principle is linked to actionable design rules that help engineers reduce the need for remanufacturing or improve its efficiency when necessary. To operationalize this framework, we developed CAD plugins for Autodesk Inventor and PTC Creo. These tools use a state machine model to present prioritized design rules based on selected failure modes and user input. By embedding DfRem logic directly into widely used CAD environments, the tool enables engineers to make sustainability‐informed decisions without disrupting existing workflows. Furthermore, this approach highlights the critical role of design in enabling circular and resource‐efficient product development, making remanufacturing a more practical and accessible strategy during the early stages of product design.

CAD↗
DOE OSTI2023

Spin polarization through axially chiral linkers: Length dependence and correlation with the dissymmetry factor

Abstract The chiral‐induced spin selectivity (CISS) effect relates to the spin‐selective electron transport through chiral molecules; therefore, the chiral molecules act as spin filters. In past studies, correlation was found between the magnitude of the spin filtering and the intensity of the circular dichroism (CD) spectrum (the first Compton peak) of the molecules. Since the intensity of the CD peak relates to both the magnitude of the electric and magnetic dipole transitions, it was not clear which of these properties correlate with the CISS effect. This work aims at addressing this question. By studying the spin‐dependent conduction and the CD spectra of the thiol‐functionalized enantiopure binaphthalene (BINAP) and ternaphthalene (TERNAP), we found that both BINAP and TERNAP exhibit a similar spin polarization of 50%, despite the first Compton peak in TERNAP being almost twice as intense as the peak in BINAP. These results can be explained by the similar values of their anisotropy (or dissymmetry) factor, g abs , which is proportional to the magnetic transition dipole moment. Hence, we concluded that the CISS effect is proportional to the transition dipole moment in chiral molecules, namely, to the dissymmetry factor.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2026

Closed‐Loop Recycling of Poly(pentylene Adipate‐ co ‐Terephthalate) via Amine‐Catalyzed Methanolysis

Advancing circularity through effective chemical recycling strategies is essential for enabling the sustainable use of emerging biodegradable polyesters in film applications. In this context, poly(pentylene adipate-co-terephthalate) with a 40/60 adipate-to-terephthalate ratio (PPeAT60), a significantly stiffer and partially biobased copolyester recently reported by our team, offers improved mechanical performance and processability compared to commercial poly(butylene adipate-co-terephthalate), while providing a platform to evaluate advanced recycling approaches for film applications. Here, this study describes depolymerization of PPeAT60 through amine-catalyzed methanolysis, followed by the repolymerization of the recovered monomers. The resulting repolymerized material exhibited a molar mass distribution, chemical structure, and thermal stability comparable to the virgin polymer, confirming the technical feasibility of the methanolysis-based recycling route. Both polymers displayed nearly identical melting, glass transition, and decomposition temperatures, crystallinity, and modulus, demonstrating full structural and mechanical reproducibility after recycling. Variations in crystallization kinetics, elongation at break, and barrier properties likely arise from trace impurities (<1%) introduced during processing acting as nucleating and stress-inducing agents. Overall, these results demonstrate that PPeAT60 retains its key properties after chemical recycling, establishing methanolysis as a promising platform for recycling of this partially biobased polymer that may be able to replace both conventional polyolefins and PBAT in flexible packaging applications.

09 BIOMASS FUELS↗
DOE OSTI2015

Spectroscopic and Computational Investigation of Low-Spin MnIII Bis(scorpionate) Complexes

Six-coordinate Mn III complexes are typically high-spin (S = 2), however, the scorpionate ligand, both in its traditional, hydridotris(pyrazolyl)borate form, Tp - and Tp* - (the latter with 3,5dimethylpyrazole substituents) and in an aryltris(carbene)borate (i.e. , N -heterocyclic carbene, NHC) form, [Ph(MeIm) 3 B] - , (MeIm = 3-methylimidazole) lead to formation of bis(scorpionate) complexes of Mn III with spin triplet ground states; three of which were investigated herein: [Tp 2 Mn]SbF 6 (1SBF 6 ), [Tp* 2 Mn]SbF 6 (2SBF 6 ), and [{Ph(MeIm) 3 B} 2 Mn]CF 3 SO 3 (3CF 3 SO 3 ). These trigonally symmetric complexes were studied experimentally by magnetic circular dichroism (MCD) spectroscopy (the propensity of 3 to oxidize to Mn IV precluded collection of useful MCD data) including variable temperatures and fields (VTVH-MCD) and computationally by ab initio CASSCF/NEVPT2 methods. These combined experimental and theoretical techniques establish the 3 A 2g electronic ground state for the three complexes, and provide information on the energy of the “conventional” high-spin excited state ( 5 E g ) and other, triplet excited states. These results show the electronic effect of pyrazole ring substituents in comparing 1 and 2. The tunability of the scorpionate ligand, even by perhaps the simplest change (from pyrazole in 1 to 3,5-dimethylpyrazole in 2) is quantitatively manifested through perturbations in ligand-field excited-state energies that impact ground-state zero-field splittings. The comparison with the NHC donor is much more dramatic. In 3, the stronger σ-donor properties of the NHC lead to a quantitatively different electronic structure, so that the lowest lying spin triplet excited state, 3 E g , is much closer in energy to the ground state than in 1 or 2. The zero-field splitting (zfs) parameters of the three complexes were calculated and in the case of 1 and 2 compare closely to experiment (lower by < 10%, < 2 cm -1 in absolute terms); for 3 the large magnitude zfs is reproduced, although there is ambiguity about its sign. The comprehensive picture obtained for these bis(scorpionate) Mn III complexes thus provides quantitative insight into the role played by the scorpionate ligand in stabilizing unusual electronic structures.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2023

Convergent behavior of extended stalk regions from staphylococcal surface proteins with widely divergent sequence patterns

Staphylococcus epidermidis and Staphylococcus aureus are highly problematic bacteria in hospital settings. A major challenge is their ability to form biofilms on abiotic or biotic surfaces. Biofilms are well-organized, multicellular bacterial aggregates that resist antibiotic treatment and often lead to recurrent infections. Bacterial cell wall-anchored (CWA) proteins are important players in biofilm formation and infection. Many have putative stalk-like regions or regions of low complexity near the cell wall-anchoring motif. Recent work demonstrated the strong propensity of the stalk region of S. epidermidis accumulation-associated protein (Aap) to remain highly extended under solution conditions that typically induce compaction. This behavior is consistent with the expected function of a stalk-like region that is covalently attached to the cell wall peptidoglycan and projects the adhesive domains of Aap away from the cell surface. In this study, we evaluate whether the ability to resist compaction is a common theme among stalk regions from various staphylococcal CWA proteins. Circular dichroism spectroscopy was used to examine secondary structure changes as a function of temperature and cosolvents along with sedimentation velocity analytical ultracentrifugation, size-exclusion chromatography, and SAXS to characterize structural characteristics in solution. All stalk regions tested are intrinsically disordered, lacking secondary structure beyond random coil and polyproline type II helix, and they all sample highly extended conformations. Remarkably, the Ser-Asp dipeptide repeat region of SdrC exhibited nearly identical behavior in solution when compared to the Aap Pro/Gly-rich region, despite highly divergent sequence patterns, indicating conservation of function by various distinct staphylococcal CWA protein stalk regions.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2017

Secondary structure and dynamics study of the intrinsically disordered silica-mineralizing peptide P 5 S 3 during silicic acid condensation and silica decondensation

The silica forming repeat R5 of sil1 from Cylindrotheca fusiformis was the blueprint for the design of P5S3, a 50-residue peptide which can be produced in large amounts by recombinant bacterial expression. It contains five protein kinase A target sites and is highly cationic due to 10 lysine and 10 arginine residues. In the presence of supersaturated ortho silicic acid P5S3 strongly enhances silica-formation whereas it retards the dissolution of amorphous silica (SiO2) at globally undersaturated concentrations. The secondary structure of P5S3 during these different functions was studied by circular dichroism (CD), complemented by nuclear magnetic resonance (NMR) studies of the peptide in the absence of silicate. The NMR studies of dual-labeled (13C, 15N) P5S3 revealed a disordered structure at pH 2.8 and 4.5. Within the pH range of 4.5 to 9.5, the CD data verified the disordered secondary structure but also suggested the presence of some polyproline II character in the absence of silicic acid. Upon silicic acid polymerization and during dissolution of preformed silica, the CD spectrum of P5S3 indicated partial transition into an α-helical conformation which was transient during silica-dissolution. Consequently, the secondary structural changes observed for P5S3 correlate with the presence of oli-gomeric/polymeric silicic acid, presumably due to P5S3-silicic acid interactions. These interactions appear, at least in part, ionic in nature since dodecylsulfate micelles, which are negatively charged, cause similar conformational shifts to P5S3 in the absence of silica while ß-D-dodecyl maltoside micelles, which are neutral, do not. Thus, P5S3 influences both the condensation of silicic acid into silica and its decondensation back to silicic acid. Moreover, the dynamics of these pro-cesses may be indirectly monitored by following structural changes to P5S3 with CD spectroscopy.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2019

VeloxChem: A Python-driven density-functional theory program for spectroscopy simulations in high-performance computing environments

An open-source program named VeloxChem has been developed for the calculation of electronic real and complex linear response functions at the levels of Hartree–Fock and Kohn–Sham density functional theories. With an object-oriented program structure written in a Python/C++ layered fashion, VeloxChem enables time-efficient prototyping of novel scientific approaches without sacrificing computational efficiency, so that molecular systems involving up to and beyond 500 second-row atoms (or some 10,000 contracted and in part diffuse Gaussian basis functions) can be routinely addressed. In addition, VeloxChem is equipped with a polarizable embedding scheme for the treatment of the classical electrostatic interactions with an environment that in turn is modeled by atomic site charges and polarizabilities. The underlying hybrid message passing interface (MPI)/open multiprocessing (OpenMP) parallelization scheme makes VeloxChem suitable for execution in high-performance computing cluster environments, showing even slightly beyond linear scaling for the Fock matrix construction with use of up to 16,384 central processing unit (CPU) cores. An efficient—with respect to convergence rate and overall computational cost—multifrequency/gradient complex linear response equation solver enables calculations not only of conventional spectra, such as visible/ultraviolet/X-ray electronic absorption and circular dichroism spectra, but also time-resolved linear response signals as due to ultra-short weak laser pulses.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2019

Defatted microalgae ( Nannochloropsis sp.) from biorefinery as a potential feed protein source to replace fishmeal in European sea bass diets

Here, the present work focuses on the use of defatted biomass of the microalga Nannochloropsis sp. from the biodiesel industry, as a partial substitute of fish meal (FM) in diets for European sea bass. The effects of increasing inclusion levels of microalgal meal on growth performance, body composition, nutrient utilization, gut morphology, and innate immunity were evaluated after 93 days. A reference alga-free diet was the control (CTRL) diet, and the three experimental diets contained 5 (MA5), 10 (MA10), and 15% (MA15) of the microalgal meal. The microalga-rich diets were supplemented with DL-methionine to assure sea bass dietary requirement. Overall, nutrient apparent digestibilities (ADCs) of the diets were not altered by the microalgal inclusion, but energy ADC was highest in fish fed the CTRL diet (90% vs 88%). At the end of the trial, fish growth performance was similar among dietary treatments (DGI of 1.0), but fish fed MA10 had a significantly higher feed conversion ratio than those fed CTRL and MA5. Final whole body composition and nutrient gain of fish fed the different diets were similar. No significant differences were detected in gut morphology among treatments. Innate immune parameters (lysozyme, alternative complement pathway—ACH50, and peroxidase) were examined, and ACH50 of the fish fed MA15 was significantly lower than those fed MA10, suggesting a dose-dependent stimulation of the innate immune response. The present results indicate that defatted microalgal meal can replace fishmeal in European sea bass diets—at inclusion levels of up to 15%—contributing to a circular economy approach.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2019

Anisometric Iron Oxide-Based Nanoparticles and Sols Based on Them: Preparation and Properties

We have synthesized magnetic powders of the magnetite-maghemite series by the chemical reaction of the FeSO{sub 4} iron salt and the natural arabinogalactan polysaccharide. These particles with a high magnetization value (∼ 300 Gs) represent a mixture of spherical particles and nanorods. Particles of a spherical shape (diameter of ∼ 5–6 nm) show a superparamagnetic behavior at room temperature, while rods with a diameter of ∼ 5 nm and a length of 30 nm are magnetic. We have prepared sol samples based on the nanoparticle aqueous solution of arabinogalactan. Our results on the magnetism of the circular dichroism (MCD) on sol are consistent with the of Mössbauer spectroscopy data.

77 NANOSCIENCE AND NANOTECHNOLOGY↗
DOE OSTI2016

Charging of Proteins in Native Mass Spectrometry

Factors that influence the charging of protein ions formed by electrospray ionization from aqueous solutions in which proteins have native structures and function were investigated. Protein ions ranging in molecular weight from 12.3 to 79.7 kDa and pI values from 5.4 to 9.6 were formed from different solutions and reacted with volatile bases of gas-phase basicities higher than that of ammonia in the cell of a Fourier-transform ion cyclotron resonance mass spectrometer. The charge-state distribution of cytochrome c ions formed from aqueous ammonium or potassium acetate is the same. Moreover, ions formed from these two solutions do not undergo proton transfer to 2-fluoropyridine, which is 8 kcal/mol more basic than ammonia. These results provide compelling evidence that proton transfer between ammonia and protein ions does not limit protein ion charge in native electrospray ionization. Both circular dichroism and ion mobility measurements indicate that there are differences in conformations of proteins in pure water and aqueous ammonium acetate, and these differences can account for the difference in the extent of charging and proton-transfer reactivities of protein ions formed from these solutions. The extent of proton transfer of the protein ions with higher gas-phase basicity bases trends with how closely the protein ions are charged to the value predicted by the Rayleigh limit for spherical water droplets approximately the same size as the proteins. These results indicate that droplet charge limits protein ion charge in native mass spectrometry and are consistent with these ions being formed by the charged residue mechanism.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2021

Determination of affinities of lanthanide-binding proteins using chelator-buffered titrations

The recent discoveries of the first proteins that bind lanthanides as part of their biological function not only are relevant to the emerging field of lanthanide-dependent biology, but also hold promise to revolutionize the technologically critical rare earths industry. Although protocols to assess the thermodynamics of metal–protein interactions are well established for “traditional” metal ions in biology, the characterization of lanthanide-binding proteins presents a challenge to biochemists due to the lanthanides' Lewis acidity, propensity for hydrolysis, and high-affinity complexes with biological ligands. These properties necessitate the preparation of metal stock solutions with very low buffered “free” metal concentrations (e.g., femtomolar to nanomolar) for such determinations. Here in this paper we describe several protocols to overcome these challenges. First, we present standardization methods for the preparation of chelator-buffered solutions of lanthanide ions with easily calculated free metal concentrations. We also describe how these solutions can be used in concert with analytical methods including UV–visible spectrophotometry, circular dichroism spectroscopy, Förster resonance energy transfer (FRET), and sensitized terbium luminescence, in order to accurately determine dissociation constants (K d s) of lanthanide–protein complexes. Finally, we highlight how application of these methods to lanthanide-binding proteins, such as lanmodulin, has yielded insights into selective recognition of lanthanides in biology. We anticipate that these protocols will facilitate discovery and characterization of additional native lanthanide-binding proteins, will motivate the understanding of their biological context, and will prompt their applications in biotechnology.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2017

Measuring fluorescence polarization with a dichrometer

In this article, a method for obtaining fluorescence polarization data from an instrument designed to measure circular and linear dichroism is compared with a previously reported approach. The new method places a polarizer between the sample and a detector mounted perpendicular to the direction of the incident beam and results in determination of the fluorescence polarization ratio, whereas the previous method does not use a polarizer and yields the fluorescence anisotropy. A similar analysis with the detector located axially with the excitation beam demonstrates that there is no frequency modulated signal due to fluorescence polarization in the absence of a polarizer.

59 BASIC BIOLOGICAL SCIENCES↗