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NASA NTRS2019

Sherlock Data Warehouse

This slide deck provides an overview of the data and resources available in the Sherlock Data Warehouse. Sherlock was developed and is currently maintained by the Aviation Systems Division at NASA Ames Research Center. Sherlock contains a valuable collection of flight, air traffic management, and weather data. But Sherlock is not just a data archive. Sherlock also includes tools and resources to access, download, and visualize data, as well as resources to process the data. This overview summarizes Sherlock data sources, demonstrates data analytics and visualization with MicroStrategy, illustrates disparate data integration using the ATM Knowledge graph, and presents a machine learning use case using the Big Data system.

data warehouse↗

NASA NTRS2020

Global earth mineral inventory: A data legacy

Minerals contain important clues to understanding the complex geologic history of Earth and other planetary bodies. Therefore, geologists have been collecting mineral samples and compiling data about these samples for centuries. These data have been used to better understand the movement of continental plates, the oxidation of Earth's atmosphere and the water regime of ancient martian landscapes. Datasets found at ‘RRUFF.info/Evolution’ and ‘mindat.org’ have documented a wealth of mineral occurrences around the world. One of the main goals in geoinformatics has been to facilitate discovery by creating and merging datasets from various scientific fields and using statistical methods and visualization tools to inspire and test hypotheses applicable to modelling Earth's past environments. To help achieve this goal, we have compiled physical, chemical and geological properties of minerals and linked them to the above-mentioned mineral occurrence datasets. As a part of the Deep Time Data Infrastructure, funded by the W.M. Keck Foundation, with significant support from the Deep Carbon Observatory (DCO) and the A.P. Sloan Foundation, GEMI (‘Global Earth Mineral Inventory’) was developed from the need of researchers to have all of the required mineral data visible in a single portal, connected by a robust, yet easy to understand schema. Our data legacy integrates these resources into a digestible format for exploration and analysis and has allowed researchers to gain valuable insights from mineralogical data. GEMI can be considered a network, with every node representing some feature of the datasets, for example, a node can represent geological parameters like colour, hardness or lustre. Exploring subnetworks gives the researcher a specific view of the data required for the task at hand. GEMI is accessible through the DCO Data Portal (https://dx.deepcarbon.net/11121/6200-6954-6634-8243-CC). We describe our efforts in compiling GEMI, the Data Policies for usage and sharing, and the evaluation metrics for this data legacy.

data legacy↗

NASA NTRS2005

Testing the Archivas Cluster (Arc) for Ozone Monitoring Instrument (OMI) Scientific Data Storage

The Ozone Monitoring Instrument (OMI) launched on NASA's Aura Spacecraft, the third of the major platforms of the EOS program on July 15,2004. In addition to the long term archive and distribution of the data from OM1 through the Goddard Earth Science Distributed Active Archive Center (GESDAAC), we are evaluating other archive mechanisms that can archive the data in a more immediately available method where it can be used for futher data production and analysis. In 2004, Archivas, Inc. was selected by NASA s Small Business Innovative Research (SBIR) program for the development of their Archivas Cluster (ArC) product. Arc is an online disk based system utilizing self-management and automation on a Linux cluster. Its goal is to produce a low cost solution coupled with the ease of management. The OM1 project is an application partner of the SBIR program, and has deployed a small cluster (5TB) based on the beta Archwas software. We performed extensive testing of the unit using production OM1 data since launch. In 2005, Archivas, Inc. was funded in SBIR Phase II for further development, which will include testing scalability with the deployment of a larger (35TB) cluster at Goddard. We plan to include Arc in the OM1 Team Leader Computing Facility (TLCF) hosting OM1 data for direct access and analysis by the OMI Science Team. This presentation will include a brief technical description of the Archivas Cluster, a summary of the SBIR Phase I beta testing results, and an overview of the OMI ground data processing architecture including its interaction with the Phase II Archivas Cluster and hosting of OMI data for the scientists.

Tilmes, Curt↗

NASA NTRS2009

Data Management Applications for the Service Preparation Subsystem

These software applications provide intuitive User Interfaces (UIs) with a consistent look and feel for interaction with, and control of, the Service Preparation Subsystem (SPS). The elements of the UIs described here are the File Manager, Mission Manager, and Log Monitor applications. All UIs provide access to add/delete/update data entities in a complex database schema without requiring technical expertise on the part of the end users. These applications allow for safe, validated, catalogued input of data. Also, the software has been designed in multiple, coherent layers to promote ease of code maintenance and reuse in addition to reducing testing and accelerating maturity.

Luong, Ivy P.↗

DOE OSTI2024

BioRT‐HBV 1.0: A Biogeochemical Reactive Transport Model at the Watershed Scale

Abstract Reactive Transport Models (RTMs) are essential tools for understanding and predicting intertwined ecohydrological and biogeochemical processes on land and in rivers. While traditional RTMs have focused primarily on subsurface processes, recent watershed‐scale RTMs have integrated ecohydrological and biogeochemical interactions between surface and subsurface. These emergent, watershed‐scale RTMs are often spatially explicit and require extensive data, computational power, and computational expertise. There is however a pressing need to create parsimonious models that require minimal data and are accessible to scientists with limited computational background. To that end, we have developed BioRT‐HBV 1.0, a watershed‐scale, hydro‐biogeochemical RTM that builds upon the widely used, bucket‐type HBV model known for its simplicity and minimal data requirements. BioRT‐HBV uses the conceptual structure and hydrology output of HBV to simulate processes including advective solute transport and biogeochemical reactions that depend on reaction thermodynamics and kinetics. These reactions include, for example, chemical weathering, soil respiration, and nutrient transformation. The model uses time series of weather (air temperature, precipitation, and potential evapotranspiration) and initial biogeochemical conditions of subsurface water, soils, and rocks as input, and output times series of reaction rates and solute concentrations in subsurface waters and rivers. This paper presents the model structure and governing equations and demonstrates its utility with examples simulating carbon and nitrogen processes in a headwater catchment. As shown in the examples, BioRT‐HBV can be used to illuminate the dynamics of biogeochemical reactions in the invisible, arduous‐to‐measure subsurface, and their influence on the observed stream or river chemistry and solute export. With its parsimonious structure and easy‐to‐use graphical user interface, BioRT‐HBV can be a useful research tool for users without in‐depth computational training. It can additionally serve as an educational tool that promotes pollination of ideas across disciplines and foster a diverse, equal, and inclusive user community.

Sadayappan, Kayalvizhi↗

NASA NTRS1975

A study of geothermal prospects in the western United States

The commercial development potential of 13 underdeveloped geothermal prospects in the Western United States was examined, and the prospects were ranked in order of relative potential for development on the basis of investment considerations. The following were considered in the ranking: geotechnical and engineering data, energy market accessibility, administrative constraints, and environmental and socio-economic factors. The primary ranking criterion is the unit cost of energy production expected from each prospect. Secondary criteria are administrative constraints, environmental factors and the quality of the geotechnical data.

Source record↗

NASA NTRS1994

Variability in equatorial Pacific sea surface topography during the verification phase of the TOPEX/POSEIDON mission

As part of the verification phase of the TOPEX/POSEIDON mission, 10-day gridded fields of altimeter data derived from TOPEX geophysical data records are compared with 10-day gridded fields of dynamic height derived from more than 60 moorings of the Tropical Ocean and Global Atmosphere-Tropical Atmosphere Ocean (TOGA-TAO) array in the equatorial Pacific Ocean. Access to TAO data in real time permits the first 500 days of the TOPEX/POSEIDON mission to be placed in the context of complementary, in-situ measurements of surface winds, sea surface temperatures, and upper ocean thermal structure, as well as the time history of these variables prior to launch. Analysis of the space-time structure in the TOPEX and TAO surface topography data increases sea level variability primarily due to equatorial Kelvin wave activity generated by intense wind bursts west of the date line in association with the 1991-1993 El Nino. Cross correlations between the two data sets are generally greater than 0.7, with root mean square (RMS) differences less than 4 cm. However, for reasons not fully understood, correlations drop to less than 0.5 in certain regions off the equator in the eastern Pacific and RMS differences can be greater than 5 cm north of the equator in the central and eastern Pacific.

Busalacchi, Antonio J.↗

NASA NTRS2013

High-Resolution Satellite Data Open for Government Research

U.S. satellite commercial imagery (CI) with resolution less than 1 meter is a common geospatial reference used by the public through Web applications, mobile devices, and the news media. However, CI use in the scientific community has not kept pace, even though those who are performing U.S. government research have access to these data at no cost.Previously, studies using multiple CI acquisitions from IKONOS-2, Quickbird-2, GeoEye-1, WorldView-1, and WorldView-2 would have been cost prohibitive. Now, with near-global submeter coverage and online distribution, opportunities abound for future scientific studies. This archive is already quite extensive (examples are shown in Figure 1) and is being used in many novel applications.

Data↗

NASA NTRS1978

Aircraft simulation data management - A prototype system

Piloted flight simulations are used throughout the aircraft development process to evaluate design concepts, handling qualities and operational procedures. Simulation project managers are often inundated with data but without a convenient and efficient way to make the correlations and analyses necessary to evaluate system performance. A computer-based Simulation Management System (SIMS) is under development. SIMS will permit simulation project engineers to quickly acquire, access, display, edit, analyze, and document the information necessary to more efficiently manage the research program. SIMS features interactive, associative access to simulation data. This paper describes SIMDEM, a prototype system designed to demonstrate these concepts and procedures in order to obtain feedback from simulator users to guide system design.

Crane, D. F.↗

NASA NTRS2007

The Sensor Management for Applied Research Technologies (SMART) Project

NASA seeks on-demand data processing and analysis of Earth science observations to facilitate timely decision-making that can lead to the realization of the practical benefits of satellite instruments, airborne and surface remote sensing systems. However, a significant challenge exists in accessing and integrating data from multiple sensors or platforms to address Earth science problems because of the large data volumes, varying sensor scan characteristics, unique orbital coverage, and the steep "learning curve" associated with each sensor, data type, and associated products. The development of sensor web capabilities to autonomously process these data streams (whether real-time or archived) provides an opportunity to overcome these obstacles and facilitate the integration and synthesis of Earth science data and weather model output.

Goodman, Michael↗

NASA NTRSDate not supplied

Advancing Open Science through Public-Private Partnerships

Rapid technology developments are changing the way data-driven research is performed within the science community. With the emergence of cloud computing, this has quickly become a viable approach for enabling “science at scale”. Researchers are no longer hindered by obstacles of data management and data wrangling, allowing them to quickly discover, access and perform analysis on extremely large datasets. Infrastructures that move data out of institutional silos and into a computational platform, will ensure that data and tools are accessible to all users. NASA’s Interagency Implementation and Advanced Concepts Team (IMPACT) seeks to address these rapid technology developments by establishing Space Act Agreements with selected partners from the public-private sector working in the area of cloud computing. These agreements aim to explore new opportunities with commercial cloud providers to accelerate open science and enable discovery, access and use of data sets on the cloud. In addition, they will also help establish training workshops for the science community to help researchers utilize the cloud for science. In this talk, we will present an overview of current and new partnerships we are developing to support open science and open data initiatives.

Elizabeth Fancher↗

NASA NTRS2019

Medical Data Architecture (MDA) Project Status

The Medical Data Architecture (MDA) project supports the Exploration Medical Capability (ExMC) risk to minimize or reduce the risk of adverse health outcomes and decrements in performance due to in-flight medical capabilities on human exploration missions. To mitigate this risk, the ExMC MDA project addresses the technical limitations identified in ExMC Gap Med 07: We do not have the capability to comprehensively process medically-relevant information to support medical operations during exploration missions. This gap identifies that the current in-flight medical data management includes a combination of data collection and distribution methods that are minimally integrated with on-board medical devices and systems. Furthermore, there are a variety of data sources and methods of data collection. For an exploration mission, the seamless management of such data will enable a more medically autonomous crew than the current paradigm. The medical system requirements are being developed in parallel with the exploration mission architecture and vehicle design. ExMC has recognized that in order to make informed decisions about a medical data architecture framework, current methods for medical data management must not only be understood, but an architecture must also be identified that provides the crew with actionable insight to medical conditions. This medical data architecture will provide the necessary functionality to address the challenges of executing a self-contained medical system that approaches crew health care delivery without assistance from ground support. Hence, the products supported by current prototype development will directly inform exploration medical system requirements.In fiscal year 2018, the MDA project developed Test Bed 2, the second iteration in a series of prototypes with functionality focused on data security through role-based access control and encryption, integration with One Portal exercise software and ingestion of an ultrasound Digital Imaging and Communications in Medicine (DICOM) file and image display. Test Bed 2 advances the medical data system architecture framework by providing these functionalities in a scalable system that maintained a layered, modular design. The architecture framework uses a data services approach with role-based access to data in a customized medical record system suitable for space exploration. These functionalities were demonstrated as part of the Next Space Technologies for Exploration Partnerships (NextSTEP) ground test demonstrated at the NASA Johnson Space Center Integrated Power, Avionics and Software (iPAS) facility. Interfacing to a Core Flight Software (CFS) system, the MDA system, using Consultative Committee for Space Data Systems (CCSDS) protocol, transferred an exercise file from the simulated flight MDA system to a mirrored MDA system on the ground through the CFS system. The selection of data sources and demonstrations enabled the team to address stakeholder concerns throughout the development process. In the next iteration, the MDA team will work with stakeholders to identify additional relevant functionalities to further advance system data models, standards and principles that will inform the medical system requirements development.

medical data architecture↗

DOE OSTI2023

American Heart Association Protein Atlas Portal for Accelerated Drug Discovery

The American Heart Association's Protein Atlas Data Portal is a cutting-edge, open-source atlas of the structural determinants of the binding of drugs to (all of) their target proteins as an unbiased means to accelerate drug discovery. The portal will provide researchers with access to comprehensive data that can help increase the selection of effective drugs and cut the time-to-market of new drugs by half.

drug targets↗

NASA NTRS1994

Nimbus-7 Earth Radiation Budjet compact solar data set user's guide

Nimbus-7 Earth Radiation Budget (ERB) solar measurements extend from November 16, 1978, to December 13, 1993, but with data gaps in 1992 and 1993. The measurements include the total solar irradiance plus six broadband spectral components. The Channel 10c total irradiance data appears very stable, and the calibration, well done. A number of characterization problems remain in the spectral measurements. In the original program, the solar and Earth flux measurements were intermixed and spread over about 170 computer tapes. For easier access, the solar data have been collected into two compact data sets. All of the data are collected into 14 Summary Solar Tapes (SST's). In addition, two Channel 10c Solar Tapes (CST's) give a separate listing of the stable total solar irradiance measurements. Channel 10c calibration and orbital irradiance values are given on separate PC disks. This document gives data descriptions and formats, together with quality control and calibration procedures.

Kyle, H. Lee↗

NASA NTRS2008

Network-Attached Solid-State Recorder Architecture

A document discusses placing memory modules on the high-speed serial interconnect, which is used by a spacecraft s computer elements for inter-processor communications, to allow all multiple computer system architectures to access the spacecraft data storage at the same time. Each memory board is identical electrically and receives its bus ID upon connection to the system. The computer elements are configured in a similar fashion. The architecture allows for multiple memory boards to be accessed simultaneously by different computer elements, and results in a scalable, strong, fault-tolerant system. The IEEE-1393 ring bus can be routed so that multiple card failures can occur and the mass memory storage will still function.

Cox, Brian↗

DOE OSTI2023

HEPnOS: a Specialized Data Service for High Energy Physics Analysis

In this paper, we present HEPnOS, a distributed data service for managing data produced by high-energy physics (HEP) experiments. Using HEPnOS, HEP applications can use HPC resources more effciently than traditional fle-based applications. The fle-based model leads to a rigid, chunk-based allocation of computational resources and limits the number of cores that can be used concurrently by an HEP application. The fundamental problem is that organizing domain-specifc data into fles inadvertently introduces a single, artifcial, confated tuning parameter that puts key optimization goals into confict: larger fle sizes reduce metadata overhead and thus improve I/O effciency, but smaller fle sizes provide more opportunity for workfow parallelism and load balancing. In this work, we introduce a domain-specifc data service that decouples that constraint so that data can be accessed and processed in its natural granularity while still maintaining I/O effciency. By removing the constraints introduced by fle handling we are able to obtain better scaling and make effcient use of more cores for processing a fxed-sized data sample. We demonstrate the improved scalability by using an application developed in the fle-based paradigm and comparing it to a version modifed to use HEPnOS.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

NASA NTRS2013

NASA GES DISC support of CO2 Data from OCO-2, ACOS, and AIRS

NASA Goddard Earth Sciences Data and Information Services Centers (GES DISC) is the data center assigned to archive and distribute current AIRS, ACOS data and data from the upcoming OCO-2 mission. The GES DISC archives and supports data containing information on CO2 as well as other atmospheric composition, atmospheric dynamics, modeling and precipitation. Along with the data stewardship, an important mission of GES DISC is to facilitate access to and enhance the usability of data as well as to broaden the user base. GES DISC strives to promote the awareness of science content and novelty of the data by working with Science Team members and releasing news articles as appropriate. Analysis of events that are of interest to the general public, and that help in understanding the goals of NASA Earth Observing missions, have been among most popular practices.Users have unrestricted access to a user-friendly search interface, Mirador, that allows temporal, spatial, keyword and event searches, as well as an ontology-driven drill down. Variable subsetting, format conversion, quality screening, and quick browse, are among the services available in Mirador. The majority of the GES DISC data are also accessible through OPeNDAP (Open-source Project for a Network Data Access Protocol) and WMS (Web Map Service). These services add more options for specialized subsetting, format conversion, image viewing and contributing to data interoperability.

Wei, Jennifer C↗

DOE OSTI2026

Single-cell and spatial omics in plants: from cellular atlases to regulatory mechanisms

Single-cell RNA sequencing (scRNA-seq) has transformed transcriptomic studies by enabling gene expression profiling at the resolution of individual cells within and across a broad range of tissue types, revealing cellular heterogeneity that is obscured in bulk tissue transcriptomes. Over the past decade, improvements in microfluidics and library preparation have drastically increased throughput, allowing tens of thousands of cells to be assayed in a single experiment. Although initially developed in animal systems, scRNA-seq has rapidly emerged as a powerful and widely adopted approach in plant biology. Beyond transcriptomics, the integration of single-cell data with chromatin accessibility, proteomics, metabolomics, and spatial omics is enabling a system-level understanding of plant gene regulation and cellular organization. Network-based analytical frameworks further support the reconstruction of gene regulatory networks and the interpretation of complex single-cell data. In this review, we summarize the current technological landscape of plant single-cell studies, discuss key experimental and analytical challenges, and review emerging strategies for validating single-cell discoveries. We also discuss future directions in applying single-cell technologies to woody perennials plants and bioenergy-relevant crops, emphasizing their potential to accelerate the discovery of cell type-specific regulatory mechanisms underlying growth, stress resilience, and biomass production.

Li, Miaomiao [ORNL] (ORCID:0000000321326168)↗