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DOE OSTI2025

Observation of $t\bar{t}$ Production in Pb+Pb Collisions at $\sqrt{s_{NN}}$ = 5.02 TeV with the ATLAS Detector

Top-quark pair production is observed in lead–lead (Pb+Pb) collisions at $\sqrt{s_{NN}}$ = 5.02 TeV at the Large Hadron Collider with the ATLAS detector. The data sample was recorded in 2015 and 2018, amounting to an integrated luminosity of 1.9 nb −1 . Events with exactly one electron and one muon and at least two jets are selected. Top-quark pair production is measured with an observed (expected) significance of 5.0 (4.1) standard deviations. The measured top-quark pair production cross section is 𝜎 𝑡⁢$\tilde{i}$ = 3.6⁢$^{+1.0}_{−0.9}$⁢(stat)⁢ $^{+0.8}_{−0.5}$⁢(syst) μ⁢b, with a total relative uncertainty of 31%, and is consistent with theoretical predictions using a range of different nuclear parton distribution functions. The observation of this process consolidates the evidence of the existence of all quark flavors in the preequilibrium stage of the quark-gluon plasma at very high energy densities, similar to the conditions present in the early Universe.

Quark-gluon plasma↗

DOE OSTI2026

Measurement of the azimuthal anisotropy of charged particles in sNN=5.36TeV O16+O16 and Ne20+Ne20 collisions with the ATLAS detector

This paper presents the first measurements of the azimuthal anisotropy coefficients , which quantify the -order Fourier modulation of charged-particle azimuthal distributions, for in and collisions recorded with the ATLAS detector at the CERN Large Hadron Collider in 2025. The coefficients are measured as a function of transverse momentum ( ), collision centrality, and event multiplicity. They are extracted using two complementary methods: two-particle correlations with a template-fit subtraction of short-range nonflow contributions, and four-particle subevent cumulants, which intrinsically suppress nonflow effects and provide sensitivity to flow fluctuations. The results show a clear hierarchy and a nonmonotonic dependence on , reaching a maximum around , consistent with trends observed in heavy-ion collisions. Detailed comparisons between the two collision systems reveal an enhanced in central collisions, consistent with theory expectations based on the predicted prolate deformation of neon nuclei, in contrast to the slightly tetrahedral structure predicted for oxygen. The four-particle cumulant results highlight strong event-by-event fluctuations and provide the greatest sensitivity to nuclear shape effects. These measurements can place new constraints on the initial geometry and the hydrodynamic response in light-ion collisions, offering valuable input for models of nuclear structure.

Aad, G↗

DOE OSTI2026

Observation of structures in the J/ψ+ψ(2S) mass spectrum with the ATLAS detector

A search for resonant structures in the mass spectrum is performed using proton-proton collision data at , corresponding to an integrated luminosity of , recorded by the ATLAS experiment at the LHC. The decay channels of and are analyzed. An excess near 6.9 GeV is observed in both channels with a combined significance of . No significant signal is observed near 7.2 GeV, and an upper limit on its yield relative to is provided. A simultaneous fit with the di- channel is carried out under assumptions regarding the resonance interferences, yielding a ratio of the partial decay widths between the and di- channels of for the resonance near 6.9 GeV.

Aad, G↗

DOE OSTI2021

ATLAS toward the High Luminosity era: challenges on electronic systems

To maximize the physics reach, the Large Hadron Collider (LHC) plans to increase its instantaneous luminosity to $7.5×10^{34} cm^{-2} s^{-1}$ and deliver $3 - 4 ab^{-1}$ of data at a center-of-mass energy of 14 TeV. To profit from this high-luminosity LHC operation with a pile-up up to 200 inelastic collisions per bunch crossing, performance of the ATLAS detector needs to be maintained and in many systems, improved. The upgraded detector will have an unprecedented output data rate of up to 200 TB/s. Real-time processing of this large data volume in a short time period is extremely challenging. New sets of both front-end and back-end electronics are required for all sub-detectors. The large number of detector channels, huge volumes of input and output data, short time available to process and transmit data, harsh radiation environment, and the need of low power consumption all impose great challenges on the designs of electronic systems.

43 PARTICLE ACCELERATORS↗

DOE OSTI2021

Cooling and Timing Tests of the ATLAS Fast TracKer VME Boards

The Fast TracKer (FTK) is an ATLAS trigger upgrade built for full-event, low-latency, high-rate tracking. The FTK core, made of 9U VME boards, performs the most demanding computational task. The associative memory board (AMB) serial link processor and the auxiliary card (AUX), plugged on the front and back sides of the same VME slot, constitute the processing unit (PU), which finds tracks using hits from eight layers of the inner detector. The PU works in pipeline with the second stage board (SSB), which finds 12-layer tracks by adding extra hits to the identified tracks. In the designed configuration, 16 PUs and four SSBs are installed in a VME crate. The high power consumption of the AMB, AUX, and SSB (respectively, of about 250, 70, and 160 W per board) required the development of a custom cooling system. Even though the expected power consumption for each VME crate of the FTK system is high compared with a common VME setup, the 8 FTK core crates will use ≈60 kW, which is just a fraction of the power and the space needed for a CPU farm performing the same task. We report on the integration of 32 PUs and eight SSBs inside the FTK system, on the infrastructures needed to run and cool them, and on the tests performed to verify the system processing rate and the temperature stability at a safe value.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2016

The Grassmannian Atlas: A General Framework for Exploring Linear Projections of High-Dimensional Data

Linear projections are one of the most common approaches to visualize high-dimensional data. Since the space of possible projections is large, existing systems usually select a small set of interesting projections by ranking a large set of candidate projections based on a chosen quality measure. However, while highly ranked projections can be informative, some lower ranked ones could offer important complementary information. Therefore, selection based on ranking may miss projections that are important to provide a global picture of the data. Here, the proposed work fills this gap by presenting the Grassmannian Atlas, a framework that captures the global structures of quality measures in the space of all projections, which enables a systematic exploration of many complementary projections and provides new insights into the properties of existing quality measures.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2018

The Physcomitrella patens gene atlas project: large-scale RNA-seq based expression data

High-throughput RNA sequencing (RNA-seq) has recently become the method of choice to define and analyze transcriptomes. For the model moss Physcomitrella patens, although this method has been used to help analyze specific perturbations, no overall reference dataset has yet been established. In the framework of the Gene Atlas project, the Joint Genome Institute selected P. patens as a flagship genome, opening the way to generate the first comprehensive transcriptome dataset for this moss. The first round of sequencing described here is composed of 99 independent libraries spanning 34 different developmental stages and conditions. Upon dataset quality control and processing through read mapping, 28 509 of the 34 361 v3.3 gene models (83%) were detected to be expressed across the samples. Differentially expressed genes (DEGs) were calculated across the dataset to permit perturbation comparisons between conditions. The analysis of the three most distinct and abundant P. patens growth stages - protonema, gametophore and sporophyte - allowed us to define both general transcriptional patterns and stage-specific transcripts. As an example of variation of physico-chemical growth conditions, we detail here the impact of ammonium supplementation under standard growth conditions on the protonemal transcriptome. Finally, the cooperative nature of this project allowed us to analyze inter-laboratory variation, as 13 different laboratories around the world provided samples. We compare differences in the replication of experiments in a single laboratory and between different laboratories.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2016

3D-SIFT-Flow for atlas-based CT liver image segmentation

Purpose: In this paper, the authors proposed a new 3D registration algorithm, 3D-scale invariant feature transform (SIFT)-Flow, for multiatlas-based liver segmentation in computed tomography (CT) images. Methods: In the registration work, the authors developed a new registration method that takes advantage of dense correspondence using the informative and robust SIFT feature. The authors computed the dense SIFT features for the source image and the target image and designed an objective function to obtain the correspondence between these two images. Labeling of the source image was then mapped to the target image according to the former correspondence, resulting in accurate segmentation. In the fusion work, the 2D-based nonparametric label transfer method was extended to 3D for fusing the registered 3D atlases. Results: Compared with existing registration algorithms, 3D-SIFT-Flow has its particular advantage in matching anatomical structures (such as the liver) that observe large variation/deformation. The authors observed consistent improvement over widely adopted state-of-the-art registration methods such as ELASTIX, ANTS, and multiatlas fusion methods such as joint label fusion. Experimental results of liver segmentation on the MICCAI 2007 Grand Challenge are encouraging, e.g., Dice overlap ratio 96.27% ± 0.96% by our method compared with the previous state-of-the-art result of 94.90% ± 2.86%. Conclusions: Experimental results show that 3D-SIFT-Flow is robust for segmenting the liver from CT images, which has large tissue deformation and blurry boundary, and 3D label transfer is effective and efficient for improving the registration accuracy.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2023

A Genome-Scale Atlas Reveals Complex Interplay of Transcription and Translation in an Archaeon

The scale of post-transcriptional regulation and the implications of its interplay with other forms of regulation in environmental acclimation are underexplored for organisms of the domain Archaea. Here, we have investigated the scale of post-transcriptional regulation in the extremely halophilic archaeon Halobacterium salinarum NRC-1 by integrating the transcriptome-wide locations of transcript processing sites (TPSs) and SmAP1 binding, the genome-wide locations of antisense RNAs (asRNAs), and the consequences of RNase_2099C knockout on the differential expression of all genes. This integrated analysis has discovered that 54% of all protein-coding genes in the genome of this haloarchaeon are likely targeted by multiple mechanisms for putative post-transcriptional processing and regulation, with about 20% of genes likely being regulated by combinatorial schemes involving SmAP1, asRNAs, and RNase_2099C. Comparative analysis of mRNA levels (transcriptome sequencing [RNA-Seq]) and protein levels (sequential window acquisition of all theoretical fragment ion spectra mass spectrometry [SWATH-MS]) for 2,579 genes over four phases of batch culture growth in complex medium generated additional evidence for the conditional post-transcriptional regulation of 7% of all protein-coding genes. We demonstrate that post-transcriptional regulation may act to fine-tune specialized and rapid acclimation to stressful environments, e.g., as a switch to turn on gas vesicle biogenesis to promote vertical relocation under anoxic conditions and modulate the frequency of transposition by insertion sequence (IS) elements of the IS200/IS605, IS4, and ISH3 families. Findings from this study are provided as an atlas in a public Web resource (https://halodata.systemsbiology.net).

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2016

Results of a higgs boson searches in the ATLAS and CMS experiments at the large hadron collider at energies 7 and 8 TeV

Recent achievements of the ATLAS and CMS experiments at the Large Hadron Collider searching for a Higgs boson are summarized. A new particle with the mass of 125 GeV and properties expected for the Standard Model Higgs boson was discovered three years ago in these experiments in proton-proton collisions when analyzing part of the data taken at the centre-of-mass energies 7 TeV and 8 TeV in 2011 and 2012 year exposures. Today all the data are processed and fully analyzed. Experimental results of studies of individual Higgs boson decay channels as well as their combination to extract such properties as mass, signal strength, coupling constants, spin and parity are reviewed. All experimental results are found to be compatible with the Standard Model predictions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2011

Limits on the production of the standard model Higgs boson in pp collisions at $\sqrt{s} = 7$ TeV with the ATLAS detector

A search for the Standard Model Higgs boson at the Large Hadron Collider (LHC) running at a centre-of-mass energy of 7 TeV is reported, based on a total integrated luminosity of up to 40 pb -1 collected by the ATLAS detector in 2010. Several Higgs boson decay channels: H→γγ, H→ZZ (*) →ℓℓℓℓ, H→ZZ→ℓℓνν, H→ZZ→ℓℓqq, H→WW (*) →ℓνℓν and H→WW→ℓνqq (ℓ is e, μ) are combined in a mass range from 110 GeV to 600 GeV. The highest sensitivity is achieved in the mass range between 160 GeV and 170 GeV, where the expected 95% CL exclusion sensitivity is at Higgs boson production cross sections 2.3 times the Standard Model prediction. Upper limits on the cross section for its production are determined. Models with a fourth generation of heavy leptons and quarks with Standard Model-like couplings to the Higgs boson are also investigated and are excluded at 95% CL for a Higgs boson mass in the range from 140 GeV to 185 GeV.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2011

Search for diphoton events with large missing transverse energy with 36 pb –1 of 7 TeV proton–proton collision data with the ATLAS detector

Making use of 36 pb –1 of proton–proton collision data at √s = 7 TeV, the ATLAS Collaboration has performed a search for diphoton events with large missing transverse energy. Observing no excess of events above the Standard Model prediction, a 95% Confidence Level (CL) upper limit is set on the cross section for new physics of σ<0.38–0.65 pb in the context of a generalised model of gauge-mediated supersymmetry breaking (GGM) with a bino-like lightest neutralino, and of σ<0.18–0.23 pb in the context of a specific model with one universal extra dimension (UED). A 95% CL lower limit of 560 GeV, for bino masses above 50 GeV, is set on the GGM gluino mass, while a lower limit of 1/ R >961 GeV is set on the UED compactification radius R . In conclusion, these limits provide the most stringent tests of these models to date.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2013

Search for a light charged Higgs boson in the decay channel $H^{+} \rightarrow c\bar{s}$ in $t\bar{t}$ events using pp collisions at $\sqrt{s} = 7\ \mathrm{TeV}$ with the ATLAS detector

A search for a charged Higgs boson (H + ) in $t\bar{t}$decays is presented, where one of the top quarks decays via t →H + b, followed by H + → two jets ($c\bar{s}$). The other top quark decays to Wb, where the W boson then decays into a lepton (e/μ) and a neutrino. The data were recorded in pp collisions at √ s = 7 TeV by the ATLAS detector at the LHC in 2011, and correspond to an integrated luminosity of 4.7 fb -1 . Finally, with no observation of a signal, 95 % confidence level (CL) upper limits are set on the decay branching ratio of top quarks to charged Higgs bosons varying between 5 % and 1 % for H + masses between 90 GeV and 150 GeV, assuming B(H + →cs) = 100%.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2014

The differential production cross section of the $\phi $ (1020) meson in $\sqrt{s}$ TeV $pp$ collisions measured with the ATLAS detector

Ameasurement is presented of the $\phi $×BR($\phi $ →K + K - ) production cross section at √s = 7 TeV using pp collision data corresponding to an integrated luminosity of 383 μb -1 , collected with the ATLAS experiment at the HC. Selection of $\phi $(1020) mesons is based on the identification of charged kaons by their energy loss in the pixel detector. The differential cross section ismeasured as a function of the transverse momentum, pT,$\phi $ , and rapidity, y$\phi $, of the $\phi $(1020) meson in the fiducial region 500 < pT,$\phi $ < 1200MeV, |y$\phi $ | < 0.8, kaon p T,K > 230 MeV and kaon momentum p K < 800 MeV. The integrated $\phi $(1020)-meson production cross section in this fiducial range is measured to be sφ×BR($\phi $ →K + K - ) = 570 ± 8 (stat) ± 66 (syst) ± 20 (lumi) μb.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2014

Muon reconstruction efficiency and momentum resolution of the ATLAS experiment in proton–proton collisions at √s = 7 TeV in 2010

This paper presents a study of the performance of the muon reconstruction in the analysis of proton–proton collisions at √s = 7 TeV at the LHC, recorded by the ATLAS detector in 2010. This performance is described in terms of reconstruction and isolation efficiencies and momentum resolutions for different classes of reconstructed muons. The results are obtained from an analysis of J/ψ meson and Z boson decays to dimuons, reconstructed from a data sample corresponding to an integrated luminosity of 40 pb -1 . The measured performance is compared to Monte Carlo predictions and deviations from the predicted performance are discussed.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2014

Measurement of flow harmonics with multi-particle cumulants in Pb+Pb collisions at √s NN = 2.76 TeV with the ATLAS detector

ATLAS measurements of the azimuthal anisotropy in lead–lead collisions at √s NN = 2.76 TeV are shown using a dataset of approximately 7 μb –1 collected at the LHC in 2010. The measurements are performed for charged particles with transverse momenta 0.5 < p T < 20 GeV and in the pseudorapidity range |η| < 2.5. The anisotropy is characterized by the Fourier coefficients, v n , of the charged-particle azimuthal angle distribution for n = 2–4. The Fourier coefficients are evaluated using multi-particle cumulants calculated with the generating function method. Results on the transverse momentum, pseudorapidity and centrality dependence of the v n coefficients are presented. The elliptic flow, v 2 , is obtained from the two-, four-, six- and eight-particle cumulants while higher-order coefficients, v 3 and v 4 , are determined with two- and four-particle cumulants. Flow harmonics v n measured with four-particle cumulants are significantly reduced compared to the measurement involving two-particle cumulants. A comparison to vn measurements obtained using different analysis methods and previously reported by the LHC experiments is also shown. Results of measurements of flow fluctuations evaluated with multi-particle cumulants are shown as a function of transverse momentum and the collision centrality. As a result, models of the initial spatial geometry and its fluctuations fail to describe the flow fluctuations measurements.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2015

Jet energy measurement and its systematic uncertainty in proton–proton collisions at √s = 7 TeV with the ATLAS detector

The jet energy scale (JES) and its systematic uncertainty are determined for jets measured with the ATLAS detector using proton–proton collision data with a centre-of-mass energy of $\sqrt{s}=7$ TeV corresponding to an integrated luminosity of $4.7$ $\,\,\text{ fb }^{-1}$. Jets are reconstructed from energy deposits forming topological clusters of calorimeter cells using the anti-$k_{t}$ algorithm with distance parameters $R=0.4$ or $R=0.6$, and are calibrated using MC simulations. A residual JES correction is applied to account for differences between data and MC simulations. This correction and its systematic uncertainty are estimated using a combination of in situ techniques exploiting the transverse momentum balance between a jet and a reference object such as a photon or a $Z$ boson, for ${20} \le p_{\mathrm {T}}^\mathrm {jet}<{1000}\, ~\mathrm{GeV }$ and pseudorapidities $|\eta |<{4.5}$. The effect of multiple proton–proton interactions is corrected for, and an uncertainty is evaluated using in situ techniques. The smallest JES uncertainty of less than 1 % is found in the central calorimeter region ($|\eta |<{1.2}$) for jets with ${55} \le p_{\mathrm {T}}^\mathrm {jet}<{500}\, ~\mathrm{GeV }$. For central jets at lower $p_{\mathrm {T}}$, the uncertainty is about 3 %. A consistent JES estimate is found using measurements of the calorimeter response of single hadrons in proton–proton collisions and test-beam data, which also provide the estimate for $p_{\mathrm {T}}^\mathrm {jet}> 1$ TeV. The calibration of forward jets is derived from dijet $p_{\mathrm {T}}$ balance measurements. The resulting uncertainty reaches its largest value of 6 % for low-$p_{\mathrm {T}}$ jets at $|\eta |=4.5$. In addition, JES uncertainties due to specific event topologies, such as close-by jets or selections of event samples with an enhanced content of jets originating from light quarks or gluons, are also discussed. The magnitude of these uncertainties depends on the event sample used in a given physics analysis, but typically amounts to 0.5–3 %.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2015

Measurement of the production and lepton charge asymmetry of W bosons in Pb+Pb collisions at √s NN = 2.76 TeV with the ATLAS detector

A measurement of W boson production in lead-lead collisions at √s NN =2.76 TeV is presented. It is based on the analysis of data collected with the ATLAS detector at the LHC in 2011 corresponding to an integrated luminosity of 0.14 nb –1 and 0.15 nb –1 in the muon and electron decay channels, respectively. The differential production yields and lepton charge asymmetry are each measured as a function of the average number of participating nucleons (N part ) and absolute pseudorapidity of the charged lepton. The results are compared to predictions based on next-to-leading-order QCD calculations. As a result, these measurements are, in principle, sensitive to possible nuclear modifications to the parton distribution functions and also provide information on scaling of W boson production in multi-nucleon systems.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗