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At least 1,657 records · Page 92

Genome-wide association analysis of the strength of the MAMP-elicited defense response and resistance to target leaf spot in sorghum

Abstract Plants have the capacity to respond to conserved molecular features known as microbe-associated molecular patterns (MAMPs). The goal of this work was to assess variation in the MAMP response in sorghum, to map loci associated with this variation, and to investigate possible connections with variation in quantitative disease resistance. Using an assay that measures the production of reactive oxygen species, we assessed variation in the MAMP response in a sorghum association mapping population known as the sorghum conversion population (SCP). We identified consistent variation for the response to chitin and flg22—an epitope of flagellin. We identified two SNP loci associated with variation in the flg22 response and one with the chitin response. We also assessed resistance to Target Leaf Spot (TLS) disease caused by the necrotrophic fungus Bipolaris cookei in the SCP. We identified one strong association on chromosome 5 near a previously characterized disease resistance gene. A moderately significant correlation was observed between stronger flg22 response and lower TLS resistance. Possible reasons for this are discussed.

59 BASIC BIOLOGICAL SCIENCES↗

Patch-Based Convolutional Neural Networks for Multiple Microstructural Features Detection in FIB-SEM Micrographs of Irradiated Nuclear Fuel

Focused ion beam scanning electron microscopy (FIB-SEM) tomography has increasingly been utilized for acquiring three-dimensional (3D) microstructure features at the sub-micron scale in irradiated nuclear materials. This technique involves sequential ion beam slicing followed by electron beam imaging and compositional mapping using energy dispersive spectroscopy (EDS). Despite its growing use, several challenges persist. These include the time-intensive nature of data collection of EDS data, difficulties in distinguishing between various microstructures, and issues with image alignment. These challenges currently limit the broader application of FIB-SEM tomography in the field. To overcome these limitations, we propose using convolutional neural networks (CNNs) to automate microstructure identification in SEM images. Our study introduces a new framework for identifying microstructures in irradiated U-10Zr (wt. %) metallic fuel with limited annotated data. The framework includes the creation of a reliable annotated dataset with paired SEM and ground truth data from EDS maps, the applications of CNNs for microstructure identification, and the validation of model performance. Specifically, we employed the Segment Anything Model (SAM) to align SEM images with corresponding EDS maps and focused ion beam (FIB) tomography SEM data. We evaluate several models, including Patch-based U-Net, Attention U-Net, and Residual U-Net, finding that patch-based U-Net exhibits superior segmentation performance and consistency. This approach reduces reliance on EDS detectors and aids in accelerating nuclear material analysis process, highlighting the potential of advanced deep learning techniques to improve microstructural understanding in nuclear material. This is the first framework to integrate SAM and Patch-based CNN models for semantic segmentation of irradiated nuclear materials, with potential applicability to other tomography datasets.

36 - MATERIALS SCIENCE↗

Hemispherical power asymmetry in intensity and polarization for Planck PR4 data

Abstract One of the foundations of the Standard Model of Cosmology is statistical isotropy, which can be tested, among other probes, through the study of the Cosmic Microwave Background (CMB). However, a hemispherical power asymmetry on large scales has been reported for WMAP and Planck data by different works.The statistical significance is above 3σfor temperature, suggesting a directional dependence of the local power spectrum, and thus a feature beyond the ΛCDM model. With the third release of the Planck data (PR3), a new analysis was performed including the E-mode polarization maps, finding an asymmetry at a modest level of significance. In this work, we perform an asymmetry analysis in intensity and polarization maps for the latest Planck processing pipeline (PR4). We obtain similar results to those obtained with PR3, with a slightly lower significance (2.8% for the Sevem method)for the amplitude of the E-mode local variance dipole as well as a significant variability with the considered mask.In addition, a hint of a possible T-E alignment between the asymmetry axes is found at the level of ∼ 5%. For the analysis, we have implemented an alternative inpainting approach in order to get an accurate reconstruction of the E-modes. More sensitive all-sky CMB polarization data, such as those expected from the future LiteBIRD experiment, are needed to reach a more robust conclusion on the possible existence of deviations from statistical isotropy in the form of a hemispherical power asymmetry.

Astronomy & Astrophysics↗

Conductance of a dissipative quantum dot: Nonequilibrium crossover near a non-Fermi-liquid quantum critical point

In this work, we find the nonlinear conductance of a dissipative resonant level in the nonequilibrium steady state near its quantum critical point. The system consists of a spin-polarized quantum dot connected to two resistive leads that provide ohmic dissipation. We focus on the crossover from the strong-coupling, non-Fermi-liquid regime to the weak-coupling, Fermi-liquid ground state, a crossover driven by the instability of the quantum critical point to hybridization asymmetry or detuning of the level in the dot. We show that the crossover properties are given by tunneling through an effective single barrier described by the boundary sine-Gordon model. The nonlinear conductance is then obtained from thermodynamic Bethe ansatz results in the literature, which were developed to treat tunneling in a Luttinger liquid. The current-voltage characteristics are thus found for any value of the resistance of the leads. For the special case of lead resistance equal to the quantum resistance, we find mappings onto, first, the two-channel Kondo model and, second, an effectively noninteracting model from which the nonlinear conductance is found analytically. A key feature of the general crossover function is that the nonequilibrium crossover driven by applied bias is different from the crossover driven by temperature---we find that the nonequilibrium crossover is substantially sharper. Finally, we compare to experimental results for both the bias and temperature crossovers: the agreement is excellent.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Likelihood-based signal and noise analysis for docking of models into cryo-EM maps

Fast, reliable docking of models into cryo-EM maps requires understanding of the errors in the maps and the models. Likelihood-based approaches to errors have proven to be powerful and adaptable in experimental structural biology, finding applications in both crystallography and cryo-EM. Indeed, previous crystallographic work on the errors in structural models is directly applicable to likelihood targets in cryo-EM. Likelihood targets in Fourier space are derived here to characterize, based on the comparison of half-maps, the direction- and resolution-dependent variation in the strength of both signal and noise in the data. Because the signal depends on local features, the signal and noise are analysed in local regions of the cryo-EM reconstruction. The likelihood analysis extends to prediction of the signal that will be achieved in any docking calculation for a model of specified quality and completeness. A related calculation generalizes a previous measure of the information gained by making the cryo-EM reconstruction.

59 BASIC BIOLOGICAL SCIENCES↗

QuantumNAT: quantum noise-aware training with noise injection, quantization and normalization

Parameterized Quantum Circuits (PQC) are promising towards quantum advantage on near-term quantum hardware. However, due to the large quantum noises (errors), the performance of PQC models has a severe degradation on real quantum devices. Take Quantum Neural Network (QNN) as an example, the accuracy gap between noise-free simulation and noisy results on IBMQ-Yorktown for MNIST-4 classification is over 60%. Existing noise mitigation methods are general ones without leveraging unique characteristics of PQC; on the other hand, existing PQC work does not consider noise effect. To this end, we present QuantumNAT, a PQC-specific framework to perform noise-aware optimizations in both training and inference stages to improve robustness. We experimentally observe that the effect of quantum noise to PQC measurement outcome is a linear map from noise-free outcome with a scaling and a shift factor. Motivated by that, we propose post-measurement normalization to mitigate the feature distribution differences between noise-free and noisy scenarios. Furthermore, to improve the robustness against noise, we propose noise injection to the training process by inserting quantum error gates to PQC according to realistic noise models of quantum hardware. Lastly, post-measurement quantization is introduced to quantize the measurement outcomes to discrete values, achieving the denoising effect. Extensive experiments on 8 classification tasks using 6 quantum devices demonstrate that QuantumNAT improves accuracy by up to 43%, and achieves over 94% 2-class, 80% 4-class, and 34% 10-class classification accuracy measured on real quantum computers. The code for construction and noise-aware training of PQC is available in the TorchQuantum library.

Wang, Hanrui↗

Multiscale Modeling Framework for Lithium Nucleation in 3D Porous Carbon Anodes

Porous carbon scaffolds offer a promising route for mitigating non-uniform lithium (Li) plating to enhance the safety and longevity of Li metal batteries. However, the influence of microstructural morphology on Li nucleation is not well understood. Here, we present a multiscale modeling framework to investigate how the porous microstructure of carbon materials affects Li nucleation behavior. Ab initio molecular dynamics simulations quantify the nucleation energy barriers of Li on graphene as a function of Li content, surface curvature, and applied potential, providing key parameters for a classical nucleation theory (CNT) model. From macroscale half-cell simulations, we obtained Li concentration and electrical potential profiles to define boundary conditions for mesoscopic simulations. At the mesoscale, three distinct synthetic 3D microstructures with different porosities and characteristic feature sizes are generated to resolve local distributions of Li flux, current density, and mechanical stress. These outputs are integrated into the CNT model to map spatial variation in nucleation rates. Our findings reveal trade-offs between suppressing nucleation rates and achieving spatial uniformity, offering design guidelines for optimizing porous carbon anodes to balance nucleation control and mechanical integrity.

Materials science↗

A study of passive microwave techniques applied to geologic problems

Passive microwave techniques were applied to geologic problems, in order to establish the microwave properties of representative rocks and minerals, and to examine the feasibility of using microwave radiometry for geologic mapping problems. A review of microwave pertaining to geology was conducted, coupled with laboratory and field investigations of the microwave emission characteristics of various geologic features. The laboratory studies consisted of dielectric constant measurements of rocks and minerals. A majority of field investigations conducted in the western United States, involved the microwave emission charateristics of rock types, and a portion of the study was concerned with microwave properties of mineralized areas. Experiments were also conducted in the vicinity of a coal seam fire in Colorado and across the San Andreas Fault Zone near the Salton Sea, in Southern California.

Edgerton, A. T.↗

A high-resolution map of the galactic-center region

A 2-cm wavelength map of the region in the vicinity of the galactic center is presented that represents an improvement in resolution by a factor of 2.7 over Hollinger's (1965) map and an improvement in sensitivity and coverage over the Downes, Maxwell, and Meeks (1965) map. The improved map reveals the great complexity of this region and the existence of a large number of densely clustered discrete sources and many new hitherto unresolved features.

Kapitzky, J. E.↗

Two-Point Correlations of Sound Pressure in the Far Field of a Jet: Experiment

Correlations of sound pressure between two microphones yield substantially more information than single microphone data; hence, they provide useful information about the nature and behavior of jet noise sources as a basis for theory development. The mapping of the space-time correlations of the pressure over a distant sphere enclosing a subsonic jet revealed a number of previously unaccounted for features essential for the interpretation of the radiation field and for the modeling of the flow field.

Maestrello, L.↗

Persistent anomalies of the Southern Hemisphere circulation

The persistent features of large anomalies have been examined and the locations of blocking in the Southern Hemisphere were determined. The data set used here contains daily maps of 500 mb geopotential heights for 100 months (June 1, 1972 to Nov. 30, 1980) covering from 10S to 90S. The seasonal cycle was defined as a 8 year mean and the 8th (annual) and 16th (semiannual) Fourier components of the time series at each grid point. Anomalies were defined as the difference between the total field and the seasonal cycle for each grid point.

Mo, K. C.↗

SOT: A rapid prototype using TAE windows

The development of the window interface extension feature of the Transportable Applications Executive (TAE) is discussed. This feature is being used to prototype a space station payload interface in order to demonstrate and assess the benefits of using windows on a bit mapped display and also to convey the concept of telescience, the control and operation of space station payloads from remote sites. The prototype version of the TAE with windows operates on a DEC VAXstation 100. This workstation has a high resolution 19 inch bit mapped display, a keyboard and a three-button mouse. The VAXstation 100 is not a stand-alone workstation, but is controlled by software executing on a VAX/8600. A short scenario was developed utilizing the Solar Optical Telescope (SOT) as an example payload. In the scenario the end-user station includes the VAXstation 100 plus an image analysis terminal used to display the CCD images. The layout and use of the prototype elements, i.e., the root menu, payload status window, and target acquisition menu is described.

Stephens, Mark↗

Regional sources and sinks of dust on Mars: Viking observations of Cerberus, Solis Planum and Syrtis Major

A study of seasonal variations of albedo features in the Cerberus, Solis Planum, and Syrtis Major regions was based on Viking Orbiter data obtained over more than one complete Martian year. Contour maps of Lambert albedo and single-point thermal inertia were constructed from the Infrared Thermal Mapper (IRTM) experiment data, and Orbiter images were used to determine the pattern and variability of regional winds (inferred from wind streak orientations). Coupled with ground-based radar data, these data allow the regional sediment transport direction, surface properties (texture, morphology, and roughness), and the implications of the observed seasonal and longer term dust redistribution to be investigated. Results are outlined.

Lee, Steven W.↗

Explosive volcanic deposits on Mars: Preliminary investigations

Two investigations were undertaken to examine possible large scale explosive volcanic deposits on Mars. The first includes an analysis of Viking Infrared Thermal Mapper (IRTM) data covering the vast deposits in the Amazonis, Memnonia, and Aeolis regions. These postulated ignimbrites have been previously mapped, and at least five high resolution nighttime IRTM data tracks cross the deposits. Preliminary analysis of the data covering Amazonis Planitia show that local features have anomalous thermal inertias but the ignimbrites as a whole do not consistently have significantly different thermal inertias from their surroundings. Preliminary photogeologic and IRTM studies of the large and small highland paterae have also begun. The purpose of IRTM studies of postulated Martian explosive volcanic deposits is to determine the physical properties of the proposed ignimbrites. If volcanic deposits are exposed at the surface, high thermal inertias, as are observed for Apollinaris Patera, should be present.

Crown, D. A.↗

Martian terrains

Terrain studies of candidate landing sites for a future rover/sample-return mission to Mars are being conducted to evaluate the geologic and trafficability aspects of each site. An optimum site should have geologic units of widely diverse ages and chemical compositions occurring in close enough proximity and in smooth enough terrain so that a roving vehicle of limited traverse ability (+ or - 100 km) could collect representative samples. In FY 1986, geologic maps were compiled at 1:500,000 and 1:2 million scales of the Mangala Valles, Kasei Valles, Chasma Boreale (north polar), and Planum Australe (south polar) areas, and a study was begun of the topography and surface roughness characteristics of the Mangala Valles site. Geologic mapping has been greatly facilitated by specially enhanced, high-resolution Viking photographs, which clarify stratigraphic relations of units unrecognized earlier. Photoclinometric profiles of topographic features provide width and depth measurements of four classes of channels, the thickness of some volcanic units, and the throw on some faults. Estimates of the surface roughness of units are calculated using a newly developed USGS computer program and using measurements derived from Earth-based radar.

Masursky, Harold↗

Mapping the Oman Ophiolite using TM data

Ophiolite terrains, considered to be the onland occurrences of oceanic crust, host a number of types of mineral deposits: volcanogenic massive sulfides, podiform chromite, and asbestos. Thematic Mapper data for the Semail Ophiolite in Oman were used to separate and map ultramafic lithologies hosting these deposits, including identification of the components of the extrusive volcanic sequence, mapping of serpentinization due to various tectonic processes, and direct identification of gossans. Thematic Mapper data were found to be extremely effective for mapping in this terrain due to the excellent spatial resolution and the presence of spectral bands which allow separation of the pertinent mineralogically caused spectral features associated with the rock types of interest.

Abrams, Michael↗

Regional sources and sinks of dust on Mars: Viking observations of Cerberus, Solis Planum, and Syrtis Major

A study of seasonal variation of albedo features in the Cerberus, Solis Planum, and Syrtis Major regions was based on Viking Orbiter data obtained over more than one complete Martian year. Contour maps of Lambert albedo and single point thermal inertia were constructed from the Infrared Thermal Mapper experiment data, and Orbiter images were used to determine the pattern and variability of regional winds (inferred from wind streak orientations). Coupled with ground based radar data, these data allow the regional sediment transport direction, surface properties (texture, morphology, and roughness), and the implications of the observed seasonal and longer term dust redistribution to be investigated. Results are outlined.

Lee, Steven W.↗

Perception of interstellar structure - Facing complexity

Some orthodox notions concerning the structure and evolution of star-forming regions are challenged; it is proposed that they arise largely by a dual process in which conceptual models are fashioned after categories which are in great part reflections of observational limitations, and the models are projected onto interpretations of data. Several examples are discussed. The need for internal support of molecular clouds is questioned. It is suggested that the inverse density-size relation often claimed for clouds and accounted for by several theoretical models is an artifact caused by limited dynamic range column density detectability, selection bias, distance uncertainties, and internal density gradients, and is contradicted by several unbiased surveys. Column density structures mapped with a large spatial and column density dynamic range are found to be dominated by irregular, connected, and nested forms on all sides. These features and a technique for the quantification of the complex structure are illustrated with a densely-sampled column density image of the Taurus region constructed from IRAS data.

Scalo, John↗