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All sourcesNASA NTRSDOE OSTI
DOE OSTI2016

Implementation of Dynamic Extensible Adaptive Locally Exchangeable Measures (IDEALEM) v 0.1

Handling large streaming data is essential for various applications such as network traffic analysis, social networks, energy cost trends, and environment modeling. However, it is in general intractable to store, compute, search, and retrieve large streaming data. This software addresses a fundamental issue, which is to reduce the size of large streaming data and still obtain accurate statistical analysis. As an example, when a high-speed network such as 100 Gbps network is monitored, the collected measurement data rapidly grows so that polynomial time algorithms (e.g., Gaussian processes) become intractable. One possible solution to reduce the storage of vast amounts of measured data is to store a random sample, such as one out of 1000 network packets. However, such static sampling methods (linear sampling) have drawbacks: (1) it is not scalable for high-rate streaming data, and (2) there is no guarantee of reflecting the underlying distribution. In this software, we implemented a dynamic sampling algorithm, based on the recent technology from the relational dynamic bayesian online locally exchangeable measures, that reduces the storage of data records in a large scale, and still provides accurate analysis of large streaming data. The software can be used for both online and offline data records.

Sim, Alex↗
DOE OSTI2014

Bayesian Treed Multivariate Gaussian Process with Adaptive Design: Application to a Carbon Capture Unit

Computer experiments (numerical simulations) are widely used in scientific research to study and predict the behavior of complex systems, which usually have responses consisting of a set of distinct outputs. The computational cost of the simulations at high resolution are often expensive and become impractical for parametric studies at different input values. To overcome these difficulties we develop a Bayesian treed multivariate Gaussian process (BTMGP) as an extension of the Bayesian treed Gaussian process (BTGP) in order to model and evaluate a multivariate process. A suitable choice of covariance function and the prior distributions facilitates the different Markov chain Monte Carlo (MCMC) movements. We utilize this model to sequentially sample the input space for the most informative values, taking into account model uncertainty and expertise gained. A simulation study demonstrates the use of the proposed method and compares it with alternative approaches. We apply the sequential sampling technique and BTMGP to model the multiphase flow in a full scale regenerator of a carbon capture unit. The application presented in this paper is an important tool for research into carbon dioxide emissions from thermal power plants.

Konomi, Bledar A.↗
DOE OSTI2021

Fermionic Partial Tomography via Classical Shadows

Here we propose a tomographic protocol for estimating any k-body reduced density matrix (k-RDM) of an n-mode fermionic state, a ubiquitous step in near-term quantum algorithms for simulating many-body physics, chemistry, and materials. Our approach extends the framework of classical shadows, a randomized approach to learning a collection of quantum-state properties, to the fermionic setting. Our sampling protocol uses randomized measurement settings generated by a discrete group of fermionic Gaussian unitaries, implementable with linear-depth circuits. We prove that estimating all k-RDM elements to additive precision ϵ requires on the order of ($^{n}_{k}$)k 3/2 log(n)/ϵ 2 repeated state preparations, which is optimal up to the logarithmic factor. Furthermore, numerical calculations show that our protocol offers a substantial improvement in constant overheads for k ≥ 2, as compared to prior deterministic strategies. We also adapt our method to particle-number symmetry, wherein the additional circuit depth may be halved at the cost of roughly 2–5 times more repetitions.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2015

Spatial Homogeneity of Bacterial Communities Associated with the Surface Mucus Layer of the Reef-Building Coral Acropora palmata

Coral surface mucus layer (SML) microbiota are critical components of the coral holobiont and play important roles in nutrient cycling and defense against pathogens. We sequenced 16S rRNA amplicons to examine the structure of the SML microbiome within and between colonies of the threatened Caribbean reef-building coral Acropora palmata in the Florida Keys. Samples were taken from three spatially distinct colony regions—uppermost (high irradiance), underside (low irradiance), and the colony base—representing microhabitats that vary in irradiance and water flow. Phylogenetic diversity (PD) values of coral SML bacteria communities were greater than surrounding seawater and lower than adjacent sediment. Bacterial diversity and community composition was consistent among the three microhabitats. Cyanobacteria, Bacteroidetes, Alphaproteobacteria, and Proteobacteria, respectively were the most abundant phyla represented in the samples. This is the first time spatial variability of the surface mucus layer of A. palmata has been studied. Homogeneity in the microbiome of A. palmata contrasts with SML heterogeneity found in other Caribbean corals. These findings suggest that, during non-stressful conditions, host regulation of SML microbiota may override diverse physiochemical influences induced by the topographical complexity of A. palmata. Documenting the spatial distribution of SML microbes is essential to understanding the functional roles these microorganisms play in coral health and adaptability to environmental perturbations.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Virulence and Genetic Diversity of Puccinia spp., Causal Agents of Rust on Switchgrass (Panicum virgatum L.) in the USA

Switchgrass (Panicum virgatum L.) is an important cellulosic biofuel grass native to North America. Rust, caused by Puccinia spp. is the most predominant disease of switchgrass and has the potential to impact biomass conversion. In this study, virulence patterns were determined on a set of 38 switchgrass genotypes for 14 single-spore rust isolates from 14 field samples collected in seven states. Single nucleotide polymorphism (SNP) variation was also assessed in 720 sequenced cloned amplicons representing 654 base pairs of the elongation factor 1-α gene from the field samples. Five major haplotypes were identified differing by 11 out of the 39 SNP positions identified. STRUCTURE, Principal Coordinate Analysis, and phylogenetic analyses divided the rust population into two genetic clusters. Virginia and Georgia had the highest and lowest rust genetic diversity, respectively. Only nine accessions showed a differential disease response between the 14 isolates, allowing the identification of eight races, differing by 1–3 virulence factors. Overall, the results suggested clonal reproduction of the pathogen and a North–South differentiation via local adaptation. However, similar haplotypes and races were also recovered from several states, suggesting migration events, and highlighting the need to further investigate the switchgrass rust population structure and evolution in the USA.

Bahri, Bochra A. (ORCID:0000000159055880)↗
DOE OSTI2016

A molecular perspective on the limits of life: Enzymes under pressure

From a purely operational standpoint, the existence of microbes that can grow under extreme conditions, or “extremophiles”, leads to the question of how the molecules making up these microbes can maintain both their structure and function. Furthermore, while microbes that live under extremes of temperature have been heavily studied, those that live under extremes of pressure have been neglected, in part due to the difficulty of collecting samples and performing experiments under the ambient conditions of the microbe. But, thermodynamic arguments imply that the effects of pressure might lead to different organismal solutions than from the effects of temperature. Observationally, some of these solutions might be in the condensed matter properties of the intracellular milieu in addition to genetic modi1cations of the macromolecules or repair mechanisms for the macromolecules. Here, the effects of pressure on enzymes, which are proteins essential for the growth and reproduction of an organism, and some adaptations against these effects are reviewed and ampli1ed by the results from molecular dynamics simulations. Our aim is to provide biological background for soft matter studies of these systems under pressure.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
NASA NTRS1999

Mars Spark Source Prototype

The Mars Spark Source Prototype (MSSP) hardware has been developed as part of a proof of concept system for the detection of trace metals such as lead, cadmium, and arsenic in Martian dusts and soils. A spark discharge produces plasma from a soil sample and detectors measure the optical emission from metals in the plasma that will allow their identification and quantification. Trace metal measurements are vital for the assessment of the potential toxicity of the Martian environment for human exploration. The current method of X-ray fluorescence can yield concentrations only of major species. Other instruments are incompatible with the volume, weight, and power constraints for a Mars mission. The instrument will be developed primarily for use in the Martian environment, but would be adaptable for terrestrial use in environmental monitoring. This paper describes the Mars Spark Source Prototype hardware, the results of the characterization tests, and future plans for hardware development.

Eichenberg, Dennis J.↗
NASA NTRS2000

Mars Spark Source Prototype Developed

The Mars Spark Source Prototype (MSSP) hardware was developed as part of a proof of concept system for the detection of trace metals such as lead, cadmium, and arsenic in Martian dusts and soils. A spark discharge produces plasma from a soil sample, and detectors measure the optical emission from metals in the plasma to identify and quantify them. Trace metal measurements are vital in assessing whether or not the Martian environment will be toxic to human explorers. The current method of x-ray fluorescence can yield concentrations of major species only. Other instruments are incompatible with the volume, weight, and power constraints for a Mars mission. The new instrument will be developed primarily for use in the Martian environment, but it would be adaptable for terrestrial use in environmental monitoring. The NASA Glenn Research Center at Lewis Field initiated the development of the MSSP as part of Glenn's Director's Discretionary Fund project for the Spark Analysis Detection of Trace Metal Species in Martian Dusts and Soils. The objective of this project is to develop and demonstrate a compact, sensitive optical instrument for the detection of trace hazardous metals in Martian dusts and soils.

Eichenberg, Dennis J.↗
NASA NTRS2009

Persistence of Space Radiation-Induced Cytogenetic Damage in the Blood Lymphocytes of Astronauts and the Effects of Repeat Long Duration Space Missions

The yield of chromosome damage in astronauts blood lymphocytes has been shown to increase after long duration space missions of a few months or more. This provides a useful in vivo measurement of space radiation induced damage that takes into account individual radiosensitivity and considers the influence of microgravity and other stress conditions. We present our latest follow-up analyses of chromosome damage in astronauts blood lymphocytes assessed by fluorescence in situ hybridization (FISH) chromosome painting and collected at various times, from directly after return from space to several years after flight. For most individuals the analysis of individual time-courses for translocations revealed a temporal decline of yields with different half-lives. Dose was derived from frequencies of chromosome exchanges using preflight calibration curves, and estimates derived from samples collected a few days after return to earth lie within the range expected from physical dosimetry. However, a temporal decline in yields may indicate complications with the use of stable aberrations for retrospective dose reconstruction, and the differences in the decay time may reflect individual variability in risk from space radiation exposure. Limited data on three individuals who have participated in repeat long duration space flights indicates a lack of correlation between time in space and translocation yields, and show a possible adaptive response to space radiation exposure.

George, Kerry A.↗
DOE OSTI2015

An adaptive filtered back-projection for photoacoustic image reconstruction

Purpose: The purpose of this study is to develop an improved filtered-back-projection (FBP) algorithm for photoacoustic tomography (PAT), which allows image reconstruction with higher quality compared to images reconstructed through traditional algorithms. Methods: A rigorous expression of a weighting function has been derived directly from a photoacoustic wave equation and used as a ramp filter in Fourier domain. The authors’ new algorithm utilizes this weighting function to precisely calculate each photoacoustic signal’s contribution and then reconstructs the image based on the retarded potential generated from the photoacoustic sources. In addition, an adaptive criterion has been derived for selecting the cutoff frequency of a low pass filter. Two computational phantoms were created to test the algorithm. The first phantom contained five spheres with each sphere having different absorbances. The phantom was used to test the capability for correctly representing both the geometry and the relative absorbed energy in a planar measurement system. The authors also used another phantom containing absorbers of different sizes with overlapping geometry to evaluate the performance of the new method for complicated geometry. In addition, random noise background was added to the simulated data, which were obtained by using an arc-shaped array of 50 evenly distributed transducers that spanned 160° over a circle with a radius of 65 mm. A normalized factor between the neighbored transducers was applied for correcting measurement signals in PAT simulations. The authors assumed that the scanned object was mounted on a holder that rotated over the full 360° and the scans were set to a sampling rate of 20.48 MHz. Results: The authors have obtained reconstructed images of the computerized phantoms by utilizing the new FBP algorithm. From the reconstructed image of the first phantom, one can see that this new approach allows not only obtaining a sharp image but also showing the correct signal strength of the absorbers. The reconstructed image of the second phantom further demonstrates the capability to form clear images of the spheres with sharp borders in the overlapping geometry. The smallest sphere is clearly visible and distinguishable, even though it is surrounded by two big spheres. In addition, image reconstructions were conducted with randomized noise added to the observed signals to mimic realistic experimental conditions. Conclusions: The authors have developed a new FBP algorithm that is capable for reconstructing high quality images with correct relative intensities and sharp borders for PAT. The results demonstrate that the weighting function serves as a precise ramp filter for processing the observed signals in the Fourier domain. In addition, this algorithm allows an adaptive determination of the cutoff frequency for the applied low pass filter.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2021

Nanomechanical testing of freestanding polymer films: in situ tensile testing and Tg measurement

Abstract A method for small-scale testing and imaging of freestanding, microtomed polymer films using a push-to-pull device is presented. Central to this method was the development of a sample preparation technique which utilized solvents at cryogenic temperatures to transfer and deposit delicate thin films onto the microfabricated push-to-pull devices. The preparation of focused ion beam (FIB)-milled tensile specimens enabled quantitative in situ TEM tensile testing, but artifacts associated with ion and electron beam irradiation motivated the development of a FIB-free specimen preparation method. The FIB-free method was enabled by the design and fabrication of oversized strain-locking push-to-pull devices. An adaptation for push-to-pull devices to be compatible with an instrumented nanoindenter expanded the testing capabilities to include in situ heating. These innovations provided quantitative mechanical testing, postmortem TEM imaging, and the ability to measure the glass transition temperature, via dynamic mechanical analysis, of freestanding polymer films. Results for each of these mentioned characterization methods are presented and discussed in terms of polymer nanomechanics. Graphic Abstract

36 MATERIALS SCIENCE↗
DOE OSTI2024

Dynamic Control of Sodium Cold Trap Purification Temperature Using LSTM System Identification

This study investigates the dynamic regulation of the sodium cold trap purification temperature at Argonne National Laboratory’s liquid sodium test facility, employing long short-term memory (LSTM) system identification techniques. The investigation introduces an innovative hybrid approach by integrating model predictive control (MPC) based on first principles dynamic models with a multi-step time–frequency LSTM model in predicting the temperature profiles of a sodium cold trap purification system. The long short-term memory–model predictive controller (LSTM-MPC) model employs a sliding window scheme to gather training samples for multi-step prediction, leveraging historical data to construct predictive models that capture the non-linearities of the complex system dynamics without explicitly modeling the underlying physical processes. The performance of the LSTM-MPC and MPC were evaluated through simulation experiments, where both models were assessed on their capacity to maintain the cold trap temperature within predefined set-points while minimizing deviations and overshoots. Results obtained show how the data-driven LSTM-MPC model demonstrates stability and adaptability. In contrast, the traditional MPC model exhibits irregularities, particularly evident as overshoots around set-point limits, which can potentially compromise its effectiveness over long prediction time intervals. The findings obtained offer valuable insights into integrating data-driven techniques for enhancing real-time monitoring systems.

LSTM-MPC↗
NASA NTRS1989

Non-contact temperature measurement requirements of ground-based research and flight programs at JPL

The Modular Containerless Processing Facility project is responsible for the development of flight equipment and of the accompanying scientific and technological research necessary to carry out containerless investigations in the low gravity of earth orbit. The requirement for sample temperature measurement is just one of the many physical properties determination needs that must be satisfied before the useful exploitation of low gravity and containerless experimentation techniques can be achieved. The specific implementation of temperature measurement for the ground-based research program is different from that of the flight hardware development project. The needs of the latter must also be differentiated according to the chronological order of the relevant space flight missions. Immediate demands of Spacelab instruments must be addressed by the adaptation of existing reliable technology to the special and restrictive on-orbit environment, while more advanced and yet unperfected techniques will be assigned to enterprises further in the future. The wide range of application of the containerless methods to the study of phenomena involving different states of matter and environmental conditions requires the satisfaction of a variety of boundary conditions through different approaches. An important issue to be resolved will be whether an integrated program dedicated to solve the problems of all the microgravity experimental effort will allow the solution of specific demands of existing as well as future flight equipment.

Trinh, E. H.↗
NASA NTRS1991

The role of the Remotely Augmented Vehicle (RAV) laboratory in flight research

An overview is presented of the unique capabilities and historical significance of the Remotely Augmented Vehicle (RAV) Lab at NASA-Dryden. The role is reviewed of the RAV Lab in enhancing flight test programs and efficient testing of new aircraft control laws. The history of the RAV Lab is discussed with a sample of its application using the X-29 aircraft. The RAV Lab allows for closed or open loop augmentation of the research aircraft while in flight using ground based, high performance real time computers. Telemetry systems transfer sensor and control data between the ground and the aircraft. The RAV capability provides for enhanced computational power, improved flight data quality, and alternate methods for the testing of control system concepts. The Lab is easily reconfigured to reflect changes within a flight program and can be adapted to new flight programs.

Cohen, Dorothea↗
DOE OSTI2018

Insights into microbial community structure and function from a shallow, simulated CO 2 -leakage aquifer demonstrate microbial selection and adaptation

Geological carbon storage is likely to be a part of a comprehensive strategy to minimize the atmospheric release of carbon dioxide (CO 2 ), raising concerns that injected CO 2 will leak into overlying freshwater aquifers. CO 2(aq) leakage may impact the dominant microbial community responsible for important ecosystem functions such as nutrient cycling, metal cycling and carbon conversion. Here, we examined the impact of an experimental in situ CO 2 leakage on a freshwater aquifer microbial community. High-throughput 16S rRNA gene sequencing demonstrated lower microbial diversity in freshwater wells with CO 2 concentrations above 1.15 g/L. Metagenomic sequencing and population genome binning were used to evaluate the metabolic potential of microbial populations across four CO 2 exposed samples and one control sample. Population genome binning resulted in the recovery and annotation of three metagenome assembled genomes (MAGs). Two of the MAGs, most closely related to Curvibacter and Sulfuricurvum, had the functional capacity for CO 2 utilization via carbon fixation coupled to sulfur and iron oxidation. The third draft genome was an Archaea, most closely related to Methanoregula, characterized by the metabolic potential for methanogenesis. Together, these findings show that CO 2 leakage in a freshwater aquifer poses a strong selection, driving both microbial community structure and metabolic function.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRSDate not supplied

Assessing the Viability of Using GEOS-Forecast Product for Landslides Forecasting: A Step Toward Early Warning System

Landslides across the globe are mostly triggered by extreme rainfall events affecting infrastructure, transportation and livelihoods. The risks are rarely quantified due to lack of data, analytical skills and limited modeling techniques. Knowledge of local to global scale landslide risks provides communities and national agencies the ability to adapt disaster management practices to mitigate and recover from these hazards. In order to minimize the risks and improve characterization of community resilience to landslides, it is vital to have reliable information about the factors triggering landslides such as rainfall, well ahead in time. Forecasting potential landslide activity and impacts can be achieved through reliable precipitation forecast models. However, it is challenging because of the temporal and spatial variability of precipitation, an important factor in triggering landslides. Evaluation of the precipitation field, associated errors, and sampling uncertainties is integral for development of efficient and reliable landslide forecasting and early warning system. This study develops a methodology to assess the viability of using a precipitation field provided by a global model and its potential integration in the landslide forecasting system. The study focuses on the comparison between the IMERG (Integrated Multi-satellitE Retrievals for Global Precipitation Mission) and GEOS (NASA Goddard Earth Observing System)-Forecast product over contiguous United States (CONUS). GEOS model assimilates new observations every 6 hours, at 00, 06, 12, and 18 UTC. The framework is tested on the GEOS-Forecast Model initialized at 00 UTC using daily IMERG early product as reference using both categorical and continuous statistics. The categorical statistics includes the probability of detection (POD), success ratio (SR), critical success index (CSI), and the hit bias. Continuous statistics such as correlation, normalized standard deviation, and root-mean-square error are also evaluated. Overall, GEOS-Forecast precipitation field over the analysis period (~1 year) show underestimation with respect to IMERG early for the daily accumulated rainfall. However, the probability distribution function and cumulative distribution function of both show similar patterns. In terms of correlations, POD, SR, CSI, hit bias, the performance varies with respect to the rainfall threshold used.

Sana Khan↗
NASA NTRSDate not supplied

High Flying Interns: NASA's Student Airborne Research Program

The NASA Student Airborne Research Program is an annual summer internship for upper-level undergraduate STEM majors. Each summer since 2009, we have competitively selected ~30 undergraduates from colleges and universities across the United States for this unique airborne research experience. In all past summers, students flew onboard a NASA research aircraft where they assisted in the operation of remote sensing and in situ instrumentation to study the Earth, ocean, and atmosphere. Students also participated in field trips where they acquired data to ground-truth and complement the airborne data. After their flights and field trips, students then spent the rest of summer developing individual research projects using the data they collected as well as data from previous year SARP flights, other NASA airborne campaigns, and NASA satellite data. This summer, we adapted the program to be entirely online. Each of the 28 undergraduate students still completed an individual research project using data from previous SARP flights as well as publicly available data from other airborne campaigns, satellites, and/or ground stations. Students were mentored remotely by five university faculty members, five graduate students, and several additional scientists and engineers from NASA. In order to preserve some aspects of the hands-on research experience, we also shipped each student a box of twenty-four Whole Air Sampling canisters identical to what they would have used to collect air samples onboard the NASA aircraft. Instead, each student collected ground samples near their home starting in mid-April through July. The goal of this sampling was to attempt to characterize the impacts of pandemic-related changes in emissions with time across the United States. The results of that ground sampling are being presented in scientific sessions in this meeting. In addition, students also measured PM2.5 and aerosol optical depth from June through August using sensors provided by the Citizen-Enabled Aerosol Measurements for Satellites (CEAMS) at Colorado State University. We will discuss strategies we employed to conduct research online, the unexpected opportunities that arose, and lessons learned.

STEM disciplines↗
NASA NTRS1980

Adaptive rain fade compensation

A large available margin must be provided for satellite communications systems operating near 20 GHz, which occasionally experience fades due to rain attenuation. It is proposed that this margin may be achieved in high-capacity FDMA satellites by dynamically providing a large margin to those links which are experiencing deep fades, while maintaining a small fade margin on all others. Single-beam SCPC operation and multiple-beam, satellite-switched FDMA systems are described, and the optimization of the dynamic FDMA links in a severely fading environment is investigated. A solution is derived which takes into account: (1) transponder intermodulation distortion, (2) cochannel and cross-polarization antenna interference, and (3) rain fade characteristics. The sample system configuration presented shows that such systems reach availability levels approaching 0.9999 at Ka-Band.

Rautio, J. C.↗