Results for “Data Association” — Page 92

DOE OSTI2023

Taxonomic and environmental distribution of bacterial amino acid auxotrophies

Abstract Many microorganisms are auxotrophic—unable to synthesize the compounds they require for growth. With this work, we quantify the prevalence of amino acid auxotrophies across a broad diversity of bacteria and habitats. We predicted the amino acid biosynthetic capabilities of 26,277 unique bacterial genomes spanning 12 phyla using a metabolic pathway model validated with empirical data. Amino acid auxotrophy is widespread across bacterial phyla, but we conservatively estimate that the majority of taxa (78.4%) are able to synthesize all amino acids. Our estimates indicate that amino acid auxotrophies are more prevalent among obligate intracellular parasites and in free-living taxa with genomic attributes characteristic of ‘streamlined’ life history strategies. We predicted the amino acid biosynthetic capabilities of bacterial communities found in 12 unique habitats to investigate environmental associations with auxotrophy, using data compiled from 3813 samples spanning major aquatic, terrestrial, and engineered environments. Auxotrophic taxa were more abundant in host-associated environments (including the human oral cavity and gut) and in fermented food products, with auxotrophic taxa being relatively rare in soil and aquatic systems. Overall, this work contributes to a more complete understanding of amino acid auxotrophy across the bacterial tree of life and the ecological contexts in which auxotrophy can be a successful strategy.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2025

2019 Meander C and Meander Z floodplain groundwater chemistry from the East River Watershed, CO, USA

This dataset includes groundwater geochemistry data from floodplain piezometers collected as a part of the Watershed Function Scientific Focus Area (SFA) located in the Upper Colorado River Basin. The data were collected in order to investigate the role of hyporheic exchange and other river corridor processes on riverine export of solutes. Data includes samples from two intra-meander zones: Meander C, in the Pumphouse vicinity, and Meander Z, just upstream of the confluence with Brush Creek. Floodplain piezometers installed along two transects across Meander C (MCP and MCB wells) and Meander Z (MZA and MZB wells) were sampled on daily to weekly time scales during summer-fall 2019. Some river water grab samples are also included. Data includes in-field measurements (pH, electrical conductivity [EC], oxidation reduction potential [ORP], dissolved oxygen [DO], and groundwater level) along with laboratory measurements (dissolved inorganic carbon [DIC], dissolved organic carbon [DOC], metals and major cations, anions [chloride, sulfate, nitrate], and dissolved ammonium). Files are included in this dataset include: sample locations and depths in both a kmz file which can be opened in Google Earth and a csv file, aqueous geochemistry data in a csv files for Meander C and Meander Z, and analytical detection limits in a csv file. This dataset also includes a file-level metadata (flmd.csv) file that lists each file contained in the dataset with associated metadata and a data dictionary (dd.csv) file that contains column/row headers used throughout the files along with a definition, units, and data type.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS1981

Cartographic potential of a spacecraft line-array camera system - Stereosat

A study of the Stereosat mission, which may acquire analog/digital stereo image data of cartographic quality with linear array camera systems, is presented, with attention given to the Stereosat system and the mission parameters, the utilization of the Stereosat studies in order to indicate the nature and scope of the problems associated with recording image data of high geometric fidelity from spacecraft equipped with line array sensors, and the assessing of the possibilities of meeting the completeness and accuracy requirements of cartographic products. A 713-km circular, sun-synchronous, near polar orbit, with an inclination of 98.24 deg and a repeat cycle of 48 days is designed to insure global coverage of the earth's land masses during the three-year lifetime of the mission. Three cameras (fore, vertical, and aft looking), mounted so as to record stereotriplets for a 61.4 km wide swath at a nominal focal plane scale of 1:1,000,000, are considered. The IFOV of 15 m should be adequate for producing thematic and image maps at scales of 1:50,000 to 1:250,000. The value of the coverage to cartographers will be dictated by the accuracy of the digital image data, which is largely a function of satellite control.

Welch, R.↗

NASA NTRS1983

Shuttle booster separation aerodynamics

A wind tunnel test program of some complexity was used to define the aerodynamic forces exerted on the space shuttle solid rocket boosters and orbiter/external tank during staging. In these tests, problems associated with the use of up to three models in close proximity and with the need to simulate high pressure separation motor plumes were handled in a unique and effective manner. A new method was developed for efficiently organizing data which is a function of a large number of independent variables. Data derived from the test program drastically reduced previous estimates of aerodynamic uncertainties and allowed certification of the separation system at the design maximum staging dynamic pressure. Reduction of flight data has implicitly verified the staging aerodynamics data base and its associated uncertainties.

Mark K. Craig↗

DOE OSTI2022

Nuclear data uncertainty propagation applied to the versatile test reactor conceptual design

We report the Versatile Test Reactor (VTR) currently under development is a 300 MWth sodium-cooled fast reactor (SFR) fueled with ternary metal alloy fuel, which aims to accelerate the testing of advanced nuclear fuels, materials, instrumentation, and sensors in high flux environments that are necessary to license the next generation of advanced reactor concepts. To support the VTR design process, uncertainties associated with the nuclear data has been propagated through the reactor core neutronics calculation to global parameters of interest, such as the core multiplication factor, kinetic parameters, and various reactivity feedback coefficients, following the sensitivity based uncertainty propagation approach. By folding the sensitivity coefficients, separately computed by the generalized perturbation theory code PERSENT and Monte Carlo code Serpent 2, with the variance-covariance matrices from COMMARA-2.0, we obtain the reaction-wise, isotope-wise, and overall uncertainties for each response of interest due to nuclear data uncertainty. With Serpent 2, the statistical error of the uncertainty is obtained by propagating the statistical error of the sensitivity coefficients through the same process using a newly developed uncertainty propagation method. From both codes, the overall top uncertainty contributors are found to be the cross section of Fe-56 elastic scattering, Na-23 elastic scattering, and U 238 inelastic scattering. The large contributions of the Fe-56 elastic scattering cross sections to global parameters are due to its relatively large relative uncertainty of 5–10% in nuclear data and the large volume of Fe-containing reflector assemblies in the fairly compact VTR core design. Both codes agreed well for the overall uncertainty estimates of all responses of interest, except the delayed neutron fraction, prompt neutron generation time, and the coolant density feedback coefficient, where Serpent 2 yielded a much larger value than PERSENT due to the large statistical error of sensitivity coefficients. The calculated uncertainties are also compared to those associated with other SFR cores. Another outcome of this study is a variance-covariance matrix of reactivity coefficients, which can be used in the subsequent uncertainty propagation to the system level to investigate the impact of identified uncertainties on system responses in the safety analysis.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

DOE OSTI2026

Synoptic NO3 in Slate River Watershed, Colorado (2022)

The synoptic nitrate (NO3) dataset in the Slate River Watershed, Colorado consists of NO3 data collected at 19 locations three times during the summer of 2022. Stream samples were collected in early summer (early July), mid summer (late August), and late summer (late September). The samples include mainstem, tributary, and point source input water samples. These data were collected to evaluate spatiotemporal variability in stream NO3 during the summer, and evaluate anthropogenic controls on stream NO3 dynamics. This data package contains: (1) a csv of all NO3 samples and (2) a csv of locations for each sampling site. The dataset additionally includes a file-level metadata (flmd.csv) file that lists each file contained in the dataset with associated metadata; and a data dictionary (dd.csv) file that contains column/row headers used throughout the files along with a definition, units, and data type. This work was supported by the Watershed Function Science Focus Area at Lawrence Berkeley National Laboratory funded by the US Department of Energy, Office of Science, Biological and Environmental Research under Contract No. DE-AC02-05CH11231.

EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > FRESHWATE↗

DOE OSTI2015

Methods, apparatus, and systems for monitoring transmission systems

A sensing platform for monitoring a transmission system, and method therefor, may include a sensor that senses one or more conditions relating to a condition of the transmission system and/or the condition of an environment around the transmission system. A control system operatively associated with the sensor produces output data based on an output signal produced by the sensor. A transmitter operatively associated with the control system transmits the output data from the control system.

42 ENGINEERING↗

DOE OSTI2016

Methods, apparatus, and systems for monitoring transmission systems

A sensing platform for monitoring a transmission system, and method therefor, may include a sensor that senses one or more conditions relating to a condition of the transmission system and/or the condition of an environment around the transmission system. A control system operatively associated with the sensor produces output data based on an output signal produced by the sensor. A transmitter operatively associated with the control system transmits the output data from the control system.

24 POWER TRANSMISSION AND DISTRIBUTION↗

DOE OSTI2026

Nuclear Structure and Decay Data for A=169 Isobars

Experimental data pertaining to all nuclei with mass number A=169 (Eu, Gd, Tb, Dy, Ho, Er, Tm, Yb, Lu, Hf, Ta, W, Re, Os, Ir, Pt) have been evaluated. Level schemes from both radioactive decay and reaction studies are presented, along with associated tables of experimental data and adopted properties for levels and γ rays. The present evaluation for A=169 supersedes the 2008 evaluation, 2008Ba31, by C.M. Baglin. A few highlights of this evaluation: More extensive work on ε decay from 169W is needed and new experimental work will be required to resolve a discrepancy between the J π values deduced for a 180-keV level in 169Ta based on extensive band structure from (HI,xnγ) work (J π =1/2−) and TDPAD measurements (J=5/2). Low lying states of 169Os were studied via fine structure of 173Pt α decay in 2014ThZZ. The Eαs feeding the g.s. of 169Os in 2008Ba31 are separated well into two consistent groups to feed the g.s. and the newly proposed state at 34.84 keV. Based on the studies of 2014ThZZ and 2021Zh52, the g.s. spin-parity assignment of 169Os has been proposed to be (7/2−) from (5/2−). The 169Ir g.s. half-life and alpha emission branching reported in 2012Th13 from 173Au α decay measurements are preferred over the values in 2005Sc22. The reported half-life value in 2005Sc22 for 169Ir g.s. is discrepant and the research work was carried out in the same lab of 2012Th13.

Basunia, M Shamsuzzoha↗

DOE OSTI2023

UPC++ v1.0 Programmer’s Guide (Rev. 2023.9.0)

UPC++ is a C++ library that supports Partitioned Global Address Space (PGAS) programming. It is designed for writing efficient, scalable parallel programs on distributed-memory parallel computers. The key communication facilities in UPC++ are one-sided Remote Memory Access (RMA) and Remote Procedure Call (RPC). The UPC++ control model is single program, multiple-data (SPMD), with each separate constituent process having access to local memory as it would in C++. The PGAS memory model additionally provides one-sided RMA communication to a global address space, which is allocated in shared segments that are distributed over the processes. UPC++ also features Remote Procedure Call (RPC) communication, making it easy to move computation to operate on data that resides on remote processes. UPC++ was designed to support exascale high-performance computing, and the library interfaces and implementation are focused on maximizing scalability. In UPC++, all communication operations are syntactically explicit, which encourages programmers to consider the costs associated with communication and data movement. Moreover, all communication operations are asynchronous by default, encouraging programmers to seek opportunities for overlapping communication latencies with other useful work. UPC++ provides expressive and composable abstractions designed for efficiently managing aggressive use of asynchrony in programs. Together, these design principles are intended to enable programmers to write applications using UPC++ that perform well even on hundreds of thousands of cores.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2022

UPC++ v1.0 Programmer’s Guide (Revision 2022.3.0)

UPC++ is a C++ library that supports Partitioned Global Address Space (PGAS) programming. It is designed for writing efficient, scalable parallel programs on distributed-memory parallel computers. The key communication facilities in UPC++ are one-sided Remote Memory Access (RMA) and Remote Procedure Call (RPC). The UPC++ control model is single program, multiple-data (SPMD), with each separate constituent process having access to local memory as it would in C++. The PGAS memory model additionally provides one-sided RMA communication to a global address space, which is allocated in shared segments that are distributed over the processes. UPC++ also features Remote Procedure Call (RPC) communication, making it easy to move computation to operate on data that resides on remote processes. UPC++ was designed to support exascale high-performance computing, and the library interfaces and implementation are focused on maximizing scalability. In UPC++, all communication operations are syntactically explicit, which encourages programmers to consider the costs associated with communication and data movement. Moreover, all communication operations are asynchronous by default, encouraging programmers to seek opportunities for overlapping communication latencies with other useful work. UPC++ provides expressive and composable abstractions designed for efficiently managing aggressive use of asynchrony in programs. Together, these design principles are intended to enable programmers to write applications using UPC++ that perform well even on hundreds of thousands of cores.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2023

UPC++ v1.0 Programmer’s Guide, Revision 2023.3.0

UPC++ is a C++ library that supports Partitioned Global Address Space (PGAS) programming. It is designed for writing efficient, scalable parallel programs on distributed-memory parallel computers. The key communication facilities in UPC++ are one-sided Remote Memory Access (RMA) and Remote Procedure Call (RPC). The UPC++ control model is single program, multiple-data (SPMD), with each separate constituent process having access to local memory as it would in C++. The PGAS memory model additionally provides one-sided RMA communication to a global address space, which is allocated in shared segments that are distributed over the processes. UPC++ also features Remote Procedure Call (RPC) communication, making it easy to move computation to operate on data that resides on remote processes. UPC++ was designed to support exascale high-performance computing, and the library interfaces and implementation are focused on maximizing scalability. In UPC++, all communication operations are syntactically explicit, which encourages programmers to consider the costs associated with communication and data movement. Moreover, all communication operations are asynchronous by default, encouraging programmers to seek opportunities for overlapping communication latencies with other useful work. UPC++ provides expressive and composable abstractions designed for efficiently managing aggressive use of asynchrony in programs. Together, these design principles are intended to enable programmers to write applications using UPC++ that perform well even on hundreds of thousands of cores.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2022

UPC++ v1.0 Programmer’s Guide, Revision 2022.9.0

UPC++ is a C++ library that supports Partitioned Global Address Space (PGAS) programming. It is designed for writing efficient, scalable parallel programs on distributed-memory parallel computers. The key communication facilities in UPC++ are one-sided Remote Memory Access (RMA) and Remote Procedure Call (RPC). The UPC++ control model is single program, multiple-data (SPMD), with each separate constituent process having access to local memory as it would in C++. The PGAS memory model additionally provides one-sided RMA communication to a global address space, which is allocated in shared segments that are distributed over the processes. UPC++ also features Remote Procedure Call (RPC) communication, making it easy to move computation to operate on data that resides on remote processes. UPC++ was designed to support exascale high-performance computing, and the library interfaces and implementation are focused on maximizing scalability. In UPC++, all communication operations are syntactically explicit, which encourages programmers to consider the costs associated with communication and data movement. Moreover, all communication operations are asynchronous by default, encouraging programmers to seek opportunities for overlapping communication latencies with other useful work. UPC++ provides expressive and composable abstractions designed for efficiently managing aggressive use of asynchrony in programs. Together, these design principles are intended to enable programmers to write applications using UPC++ that perform well even on hundreds of thousands of cores.

97 MATHEMATICS AND COMPUTING↗

NASA NTRS1993

Identification and interpretation of patterns in rocket engine data

A prototype software system was constructed to detect anomalous Space Shuttle Main Engine (SSME) behavior in the early stages of fault development significantly earlier than the indication provided by either redline detection mechanism or human expert analysis. The major task of the research project is to analyze ground test data, to identify patterns associated with the anomalous engine behavior, and to develop a pattern identification and detection system on the basis of this analysis. A prototype expert system which was developed on both PC and Symbolics 3670 lisp machine for detecting anomalies in turbopump vibration data was checked with data from ground tests 902-473, 902-501, 902-519, and 904-097 of the Space Shuttle Main Engine. The neural networks method was also applied to supplement the statistical method utilized in the prototype system to investigate the feasibility in detecting anomalies in turbopump vibration of SSME. In most cases the anomalies detected by the expert system agree with those reported by NASA. On the neural networks approach, the results are given the successful detection rate higher than 95 percent to identify either normal or abnormal running condition based on the experimental data as well as numerical simulation.

Lo, C. F.↗

NASA NTRS2016

Using 3-D Numerical Weather Data in Piloted Simulations

This report describes the process of acquiring and using 3-D numerical model weather data sets in NASA Langley's Research Flight Deck (RFD). A set of software tools implement the process and can be used for other purposes as well. Given time and location information of a weather phenomenon of interest, the user can download associated numerical weather model data. These data are created by the National Oceanic and Atmospheric Administration (NOAA) High Resolution Rapid Refresh (HRRR) model, and are then processed using a set of Mathworks' Matlab(TradeMark) scripts to create the usable 3-D weather data sets. Each data set includes radar re ectivity, water vapor, component winds, temperature, supercooled liquid water, turbulence, pressure, altitude, land elevation, relative humidity, and water phases. An open-source data processing program, wgrib2, is available from NOAA online, and is used along with Matlab scripts. These scripts are described with sucient detail to make future modi cations. These software tools have been used to generate 3-D weather data for various RFD experiments.

Daniels, Taumi S.↗

DOE OSTI2015

Preface by the CW2014 Organizers-Including Program, Advisory Board, Participants and Photo

This issue of the Nuclear Data Sheets contains the proceedings of the 'International Workshop on Nuclear Data Covariances'. This workshop was the third one in a series that started with the 'Workshop on Neutron Cross Section Covariances' (Port Je erson, USA, 2008) and continued with the 'Second Workshop on Neutron Cross Section Covariances' (Vienna, Austria, 2011). The current workshop returned to the US and took place in the center of the beautiful and historic city of Santa Fe, New Mexico, USA from April 28 to May 1, 2014. The purpose of this workshop was to bring together scientists in the field of nuclear data evaluation, nuclear reaction theory, reactor physics and associated experiments to review recent developments in nuclear data evaluation methodology as well as assess and discuss open questions regarding uncertainty estimates and associated formatting requirements from the point of view of the experimentalist, the theoretician, the evaluator as well as from application side, e.g. in transport calculations. The workshop was open to contributions on a wide variety of nuclear data observables (cross sections, fission yields, energy and angle spectra, etc.), from the resonance range up to the high energy range as well as for light to heavy elements.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

NASA NTRS1987

The error associated with use of various forms of the divergence equation to diagnose geopotential and temperature

This study utilizes a model-generated data set to evaluate the errors associated with the diagnosis of geopotential height using three approximate forms of the divergence equation (DE). The DE was solved on the original sigma-coordinate surfaces of the model to exclude any error produced in the process of interpolating the data from observation points to the coordinate surface of the DE. An inviscid, nonlinear, divergent DE produced rms geopotential height errors as large as 3 m and rms temperature errors of over 26 C in the lower planetary boundary layer (PBL), with minimal errors above 800 mb. Elimination of the isobaric divergence in the velocity field caused additional height errors of 5-6 m and temperature errors of 0.4-1.2 C in the free troposphere. Use of a further-degraded DE without nonlinear terms caused height errors of 10-15 m in the upper troposphere with modestly increased temperature errors. Error fields at all levels had synoptic-scale features, with some mesoalpha structure. No spatial noise was apparent. Use of a temporal spectral filter to eliminate high-frequency modes from the model-generated data did not significantly influence the error associated with use of various forms of the DE.

Modica, George M.↗

DOE OSTI2018

Socioeconomic and particulate air pollution correlates of heart disease risk

Highlights: • Heart disease risk varies with age, sex, smoking, income, education, and particulate (PM2.5) air pollution. • How these risk factors interact is unclear. • We examine correlates of self-reported heart disease risk in a large data set. • Income is negatively associated with both PM2.5 exposure and heart disease risk. • Income is an important confounder of air pollution-heart disease associations. • Nonparametric methods can quantify associations and suggest causal interpretations. How does risk of heart disease depend on age, sex, smoking, income, education, marital status, and outdoor concentrations of fine particulate matter (PM2.5)? We join data available from the Centers for Disease Control and Prevention (CDC) Behavioral Risk Factor Surveillance (BRFSS) System for years 2008–2012 to US Environmental Protection Agency (EPA) data on county-specific concentrations of fine particulate matter (PM2.5) to quantify associations among these variables and to explore possible causal interpretations. Low income is identified as a direct cause of increased heart disease risk in this data set. The effect depends on age and sex: it is most pronounced for men under age 70 and for women under age 80. Income is significantly associated with all of the other variables examined and confounds the association between PM2.5 and heart disease risk. This association is significant in regression models that exclude income, but not in regression models that include it, both in the data set as a whole and in the subset of observations with PM2.5 < 15 μg/m{sup 3}. Causal directed acyclic graph (DAG) models and non-parametric model ensemble partial dependence plots confirm that higher incomes reduce heart disease risk, consistent with previous observations of socioeconomic gradients in health risks. They support interpretation of this as a robust causal relation apparent in non-parametric analyses, and hence independent of any specific parametric modeling assumptions.

54 ENVIRONMENTAL SCIENCES↗