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At least 1,639 records · Page 91

A dynamic model for plant growth: validation study under changing temperatures

A dynamic simulation model to describe vegetative growth of plants, for which some functions and parameter values have been estimated previously by optimization search techniques and numerical experimentation based on data from constant temperature experiments, is validated under conditions of changing temperatures. To test the predictive capacity of the model, dry matter accumulation in the leaves, stems, and roots of tobacco plants (Nicotiana tabacum L.) was measured at 2- or 3-day intervals during a 5-week period when temperatures in controlled-environment rooms were programmed for changes at weekly and daily intervals and in ascending or descending sequences within a range of 14 to 34 degrees C. Simulations of dry matter accumulation and distribution were carried out using the programmed changes for experimental temperatures and compared with the measured values. The agreement between measured and predicted values was close and indicates that the temperature-dependent functional forms derived from constant-temperature experiments are adequate for modelling plant growth responses to conditions of changing temperatures with switching intervals as short as 1 day.

NASA Discipline Number 60-40↗

High-temperature catalyst for catalytic combustion and decomposition

A robust, high temperature mixed metal oxide catalyst for propellant composition, including high concentration hydrogen peroxide, and catalytic combustion, including methane air mixtures. The uses include target, space, and on-orbit propulsion systems and low-emission terrestrial power and gas generation. The catalyst system requires no special preheat apparatus or special sequencing to meet start-up requirements, enabling a fast overall response time. Start-up transients of less than 1 second have been demonstrated with catalyst bed and propellant temperatures as low as 50 degrees Fahrenheit. The catalyst system has consistently demonstrated high decomposition effeciency, extremely low decomposition roughness, and long operating life on multiple test particles.

Mays, Jeffrey A.↗

Learning Extended Finite State Machines

We present an active learning algorithm for inferring extended finite state machines (EFSM)s, combining data flow and control behavior. Key to our learning technique is a novel learning model based on so-called tree queries. The learning algorithm uses the tree queries to infer symbolic data constraints on parameters, e.g., sequence numbers, time stamps, identifiers, or even simple arithmetic. We describe sufficient conditions for the properties that the symbolic constraints provided by a tree query in general must have to be usable in our learning model. We have evaluated our algorithm in a black-box scenario, where tree queries are realized through (black-box) testing. Our case studies include connection establishment in TCP and a priority queue from the Java Class Library.

Register Automata↗

Autonomous Image Analysis for Future Mars Missions

To explore high priority landing sites and to prepare for eventual human exploration, future Mars missions will involve rovers capable of traversing tens of kilometers. However, the current process by which scientists interact with a rover does not scale to such distances. Specifically, numerous command cycles are required to complete even simple tasks, such as, pointing the spectrometer at a variety of nearby rocks. In addition, the time required by scientists to interpret image data before new commands can be given and the limited amount of data that can be downlinked during a given command cycle constrain rover mobility and achievement of science goals. Experience with rover tests on Earth supports these concerns. As a result, traverses to science sites as identified in orbital images would require numerous science command cycles over a period of many weeks, months or even years, perhaps exceeding rover design life and other constraints. Autonomous onboard science analysis can address these problems in two ways. First, it will allow the rover to preferentially transmit "interesting" images, defined as those likely to have higher science content. Second, the rover will be able to anticipate future commands. For example, a rover might autonomously acquire and return spectra of "interesting" rocks along with a high-resolution image of those rocks in addition to returning the context images in which they were detected. Such approaches, coupled with appropriate navigational software, help to address both the data volume and command cycle bottlenecks that limit both rover mobility and science yield. We are developing fast, autonomous algorithms to enable such intelligent on-board decision making by spacecraft. Autonomous algorithms developed to date have the ability to identify rocks and layers in a scene, locate the horizon, and compress multi-spectral image data. We are currently investigating the possibility of reconstructing a 3D surface from a sequence of images acquired by a robotic arm camera. This would then allow the return of a single completely in focus image constructed only from those portions of individual images that lie within the camera's depth of field. Output from these algorithms could be used to autonomously obtain rock spectra, determine which images should be transmitted to the ground, or to aid in image compression. We will discuss these algorithms and their performance during a recent rover field test.

Gulick, V. C.↗

Improving deep learning-based protein distance prediction in CASP14

Abstract Motivation Accurate prediction of residue–residue distances is important for protein structure prediction. We developed several protein distance predictors based on a deep learning distance prediction method and blindly tested them in the 14th Critical Assessment of Protein Structure Prediction (CASP14). The prediction method uses deep residual neural networks with the channel-wise attention mechanism to classify the distance between every two residues into multiple distance intervals. The input features for the deep learning method include co-evolutionary features as well as other sequence-based features derived from multiple sequence alignments (MSAs). Three alignment methods are used with multiple protein sequence/profile databases to generate MSAs for input feature generation. Based on different configurations and training strategies of the deep learning method, five MULTICOM distance predictors were created to participate in the CASP14 experiment. Results Benchmarked on 37 hard CASP14 domains, the best performing MULTICOM predictor is ranked 5th out of 30 automated CASP14 distance prediction servers in terms of precision of top L/5 long-range contact predictions [i.e. classifying distances between two residues into two categories: in contact (<8 Angstrom) and not in contact otherwise] and performs better than the best CASP13 distance prediction method. The best performing MULTICOM predictor is also ranked 6th among automated server predictors in classifying inter-residue distances into 10 distance intervals defined by CASP14 according to the precision of distance classification. The results show that the quality and depth of MSAs depend on alignment methods and sequence databases and have a significant impact on the accuracy of distance prediction. Using larger training datasets and multiple complementary features improves prediction accuracy. However, the number of effective sequences in MSAs is only a weak indicator of the quality of MSAs and the accuracy of predicted distance maps. In contrast, there is a strong correlation between the accuracy of contact/distance predictions and the average probability of the predicted contacts, which can therefore be more effectively used to estimate the confidence of distance predictions and select predicted distance maps. Availability and implementation The software package, source code and data of DeepDist2 are freely available at https://github.com/multicom-toolbox/deepdist and https://zenodo.org/record/4712084#.YIIM13VKhQM. Supplementary information Supplementary data are available at Bioinformatics online.

59 BASIC BIOLOGICAL SCIENCES↗

Perturbation-Based Diagnosis of False Data Injection Attack Using Distributed Energy Resources

Modern smart grid relies on various sensor measurements for its operational control. In a successful false data injection attack, the attacker manipulates the measurements from the grid sensors such that undetected errors are introduced into the estimates of the system parameters leading to catastrophic situations. This paper proposes a novel perturbation based false data injection attack detection mechanism that utilizes inverter based distributed energy resources (DERs) to create low magnitude perturbation signal in the distribution system voltage that is inconsequential to the normal grid operation. Two voltage sensitivity analysis based algorithms are designed to identify the optimal set of DERs that can create the voltage perturbation signal of desired magnitude. An analytical method of voltage sensitivity analysis is used to compute the magnitude of voltage perturbation signal at each node in a computationally efficient manner. Then, a detection mechanism is developed that checks for the presence of the perturbation sequence in each sensor measurement. A sensor measurement is deemed authentic if the voltage perturbation signal is present in the data. In case of sensor malfunction or cyber-attack, the perturbation signal will not be present in the measurement data. Performance of the proposed attack detection mechanism is validated via simulation of the IEEE 69 bus test system.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Correlation of 3 hour radiosonde data with coincident Nimbus-7 total ozone measurements

A special network exercise supporting the VAS demonstration is reported. The second near-real time total ozone mapping spectrometer (TOMS) activity involving out of sequence processing of Nimbus-7 data over the United States and Europe is presented. The ozone data maps were used by airlines to search for regions of clear air turbulence and by an aircraft data gathering program, for synoptic upper air and tropopause height analyses. The TOMS total ozone levels are correlated with radiosonde tropopause height for testing the ability of TOMS data to give independent satellite measurements of tropopause height.

Gatlin, J. A.↗

Evaluation of the effect of crack closure on fatigue crack growth of simulated short cracks

A test program was performed to determine the influence of crack closure on fatigue crack growth (FCG) rates of short cracks. By use of the standard compact tension specimen, test procedures were devised to evaluate closure loads in the wake of the crack behind its tip. The first procedure determined the magnitude of crack closure as a function of the fatigued crack wave by incrementally removing the contacting wake surfaces and measuring closure load at each increment. The second procedure used a low-high loading sequence to simulate short crack behavior. Based on the results, it was concluded that crack closure is not the major reason for the more rapid growth of short cracks as compared to long crack growth.

Telesman, J.↗

Characterization and hardware modification of linear momentum exchange devices

A sequence of modifications were made on the TRW Linear Momentum Exchange Devices (LMEDs) which were supplied for a joint MSFC/Air Force Wright Aeronautical Laboratory (AFWAL) control venture called Vibrational Control of Space Structures (VCOSS)-II. The modifications were necessary to alleviate and assuage the LMED nonlinearities. Extensive discussion of the LMED modification are presented along with the test plan, test results and conclusions. In addition, a chronology of events, relative to the LMED changes, is given.

Edgemon, George D.↗

Scaling effects in the impact response of graphite-epoxy composite beams

In support of crashworthiness studies on composite airframes and substructure, an experimental and analytical study was conducted to characterize size effects in the large deflection response of scale model graphite-epoxy beams subjected to impact. Scale model beams of 1/2, 2/3, 3/4, 5/6, and full scale were constructed of four different laminate stacking sequences including unidirectional, angle ply, cross ply, and quasi-isotropic. The beam specimens were subjected to eccentric axial impact loads which were scaled to provide homologous beam responses. Comparisons of the load and strain time histories between the scale model beams and the prototype should verify the scale law and demonstrate the use of scale model testing for determining impact behavior of composite structures. The nonlinear structural analysis finite element program DYCAST (DYnamic Crash Analysis of STructures) was used to model the beam response. DYCAST analysis predictions of beam strain response are compared to experimental data and the results are presented.

Jackson, Karen E.↗

Effect of alternately high and low repeated stresses upon the fatigue strength of 25S-T aluminum alloy

Fatigue tests were made on one lot of 3/4 inch diameter rolled-and-drawn 25S-T aluminum-alloy rod normal in composition and tensile properties. The specimens were tested at 3500 cycles per second in a rotating-beam fatigue test machine. Tests were made for three ratios (20:1, 50:1, and 200:1) of the number of cycles applied at low stress to the number applied at high stress. In general, failure occurred when the number of cycles at either the low or the high stress approached the ordinary fatigue curve for the material, regardless of the sequence in which the stresses were applied.

Stickley, G W↗

The Star Formation History of Orion and its Environs

During this period of performance, we have obtained the following observations and carried out the analysis of the Orion associations itemized below. 1. Quest Optical Photometry: The photometric survey carries out with the Quest camera is finished. The strips at declinations +1 degree and -1 degree have already been processed. Photometry for a total of around 400,000 stars was obtained in these two strips with the Quest camera pipeline. Around 24,000 variables were picked out of this total by our variability software. Of these, around 2,500 stars fall above the main sequence and so were picked as candidates for spectroscopic follow-up. 2. Slit spectroscopy of bright candidates: Spectra for some 800 candidate PMS stars were obtained with the FAST spectrograph at the SAO 1.5m telescope in Mt. Hopkins. The spectra are being analyzed; 300 stars have been confirmed as young. 3. Multifiber spectroscopy: The first test of the multifiber spectrograph Hectoechelle were carried out in December 2003. One field of the Orion Nebula Cluster was observed with Hectochelle at three wavelength settings. A total of 157 spectra were obtained. Of these, 63 stars have been confirmed as Classical T Tauri stars, and 36 additional stars need further follow up. A paper is in preparation. 4. UBVRI photometry: We were granted time with the 4-shooter CCD Mosaic Camera at the SAO 1.2m telescope, to obtain UBVRI photometry of a subset of 53 newly identified T Tauri stars in the strips centered at DEC=-1 and +l. This sample is composed of strong Halpha emitting PMS stars (Classical T Tauri stars) located mostly in the Orion OB l b association, around the Orion Belt area. We have estimated mass accretion rates for 22 for these stars using the U photometry and the calibration of Gullbring et al. (1998), and found it to be similar to that of young stars in associations of similar age. 5. Near and mid-IR photometry: During the winter of 2003, we used the IR Camera on the SAO 1.2m telescope, to obtain L- band photometry of a set of the newly identified Orion OB l a and l b stars, in order to look for IR excess emission coming from the hotter inner parts of circumstellar disks. These data is being combined with the GEMINI/OSCIR 10 micron photometry obtained during 2002 and the mass accretion rates to determine the properties of disks in Ori lb. A paper is presently on preparation.

Calvet, Nuria↗

Furrow microtubules and localized exocytosis in cleaving Xenopus laevis embryos

In dividing Xenopus eggs, furrowing is accompanied by expansion of a new domain of plasma membrane in the cleavage plane. The source of the new membrane is known to include a store of oogenetically produced exocytotic vesicles, but the site where their exocytosis occurs has not been described. Previous work revealed a V-shaped array of microtubule bundles at the base of advancing furrows. Cold shock or exposure to nocodazole halted expansion of the new membrane domain, which suggests that these microtubules are involved in the localized exocytosis. In the present report, scanning electron microscopy revealed collections of pits or craters, up to approximately 1.5 micro m in diameter. These pits are evidently fusion pores at sites of recent exocytosis, clustered in the immediate vicinity of the deepening furrow base and therefore near the furrow microtubules. Confocal microscopy near the furrow base of live embryos labeled with the membrane dye FM1-43 captured time-lapse sequences of individual exocytotic events in which irregular patches of approximately 20 micro m(2) of unlabeled membrane abruptly displaced pre-existing FM1-43-labeled surface. In some cases, stable fusion pores, approximately 2 micro m in diameter, were seen at the surface for up to several minutes before suddenly delivering patches of unlabeled membrane. To test whether the presence of furrow microtubule bundles near the surface plays a role in directing or concentrating this localized exocytosis, membrane expansion was examined in embryos exposed to D(2)O to induce formation of microtubule monasters randomly under the surface. D(2)O treatment resulted in a rapid, uniform expansion of the egg surface via random, ectopic exocytosis of vesicles. This D(2)O-induced membrane expansion was completely blocked with nocodazole, indicating that the ectopic exocytosis was microtubule-dependent. Results indicate that exocytotic vesicles are present throughout the egg subcortex, and that the presence of microtubules near the surface is sufficient to mobilize them for exocytosis at the end of the cell cycle.

Non-NASA Center↗

High Speed Intensified Video Observations of TLEs in Support of PhOCAL

The third observing season of PhOCAL (Physical Origins of Coupling to the upper Atmosphere by Lightning) was conducted over the U.S. High Plains during the late spring and summer of 2013. The goal was to capture using an intensified high-speed camera, a transient luminous event (TLE), especially a sprite, as well as its parent cloud-to-ground (SP+CG) lightning discharge, preferably within the domain of a 3-D lightning mapping array (LMA). The co-capture of sprite and its SP+CG was achieved within useful range of an interferometer operating near Rapid City. Other high-speed sprite video sequences were captured above the West Texas LMA. On several occasions the large mesoscale convective complexes (MCSs) producing the TLE-class lightning were also generating vertically propagating convectively generated gravity waves (CGGWs) at the mesopause which were easily visible using NIR-sensitive color cameras. These were captured concurrent with sprites. These observations were follow-ons to a case on 15 April 2012 in which CGGWs were also imaged by the new Day/Night Band on the Suomi NPP satellite system. The relationship between the CGGW and sprite initiation are being investigated. The past year was notable for a large number of elve+halo+sprite sequences sequences generated by the same parent CG. And on several occasions there appear to be prominent banded modulations of the elves' luminosity imaged at >3000 ips. These stripes appear coincident with the banded CGGW structure, and presumably its density variations. Several elves and a sprite from negative CGs were also noted. New color imaging systems have been tested and found capable of capturing sprites. Two cases of sprites with an aurora as a backdrop were also recorded. High speed imaging was also provided in support of the UPLIGHTS program near Rapid City, SD and the USAFA SPRITES II airborne campaign over the Great Plains.

Lyons, Walter A.↗

Stratigraphically Controlled Stress Variations at the Hydraulic Fracture Test Site-1 in the Midland Basin, TX

We investigated the relationship between stratigraphy, stress, and microseismicity at the Hydraulic Fracture Test Site-1. The site comprises two sets of horizontal wells in the Wolfcamp shale and a deviated well drilled after hydraulic fracturing. Regional stresses indicate normal/strike-slip faulting with E-W compression. Stress measurements in vertical and horizontal wells show that the minimum principal stress varies with depth. Strata with high clay and organic content show high values of the least compressive stress, consistent with the theory of viscous stress relaxation. By integrating data from core, logs, and the hydraulic fracturing stages, we constructed a stress profile for the Wolfcamp sequence, which predicts how much pressure is required for hydraulic fracture growth. We applied the results to fracture orientation data from image logs to determine the population of pre-existing faults that are expected to slip during stimulation. We also determined microseismic focal plane mechanisms and found slip on steeply dipping planes striking NW, consistent with the orientations of potentially active faults predicted by the stress model. This case study represents a general approach for integrating stress measurements and rock properties to predict hydraulic fracture growth and the characteristics of injection-induced microseismicity.

microseismicity↗

Signal processing for airborne doppler radar detection of hazardous wind shear as applied to NASA 1991 radar flight experiment data

Radar data collected during the 1991 NASA flight tests have been selectively analyzed to support research directed at developing both improved as well as new algorithms for detecting hazardous low-altitude windshear. Analysis of aircraft attitude data from several flights indicated that platform stability bandwidths were small compared to the data rate bandwidths which should support an assumption that radar returns can be treated as short time stationary. Various approaches at detection of weather returns in the presence of ground clutter are being investigated. Non-coventional clutter rejection through spectrum mode tracking and classification algorithms is a subject of continuing research. Based upon autoregressive modeling of the radar return time sequence, this approach may offer an alternative to overcome errors in conventional pulse-pair estimates. Adaptive filtering is being evaluated as a means of rejecting clutter with emphasis on low signal-to-clutter ratio situations, particularly in the presence of discrete clutter interference. An analysis of out-of-range clutter returns is included to illustrate effects of ground clutter interference due to range aliasing for aircraft on final approach. Data are presented to indicate how aircraft groundspeed might be corrected from the radar data as well as point to an observed problem of groundspeed estimate bias variation with radar antenna scan angle. A description of how recorded clutter return data are mixed with simulated weather returns is included. This enables the researcher to run controlled experiments to test signal processing algorithms. In the summary research efforts involving improved modelling of radar ground clutter returns and a Bayesian approach at hazard factor estimation are mentioned.

Baxa, Ernest G., Jr.↗

Ca-isotopes as a robust tracer of magmatic differentiation

The large mass difference (~10%) between the two most abundant isotopes of calcium, 40 Ca and 44 Ca, gives Ca great potential in tracking mass-dependent fractionation during magmatic processes. Resolvable Ca-isotope fractionation during fractional crystallization of magma, particularly by feldspar in evolved melts, has been theoretically inferred but not robustly tested in nature. To further explore the effects of magmatic differentiation on Ca-isotope systematics, we studied the late-Permian alkaline igneous suite of the Øyangen Caldera, Oslo Rift, Norway, consisting of volcanic and intrusive units ranging from basanitic to rhyolitic compositions. Major and trace element variations and modeling demonstrate that the main series of samples (N = 21), including basanites, ring-dyke syenites, and central-dome syenites, likely documents a co-genetic and closed-system fractional crystallization sequence. Our data show minimal δ 44/40 Ca variation (< 0.05 ‰) in the intermediate magma and a marked increase in δ 44/40 Ca in the felsic magma of the Øyangen Caldera (from 0.62 ± 0.02 ‰ to 1.15 ± 0.03 ‰ relative to Ca standard, SRM915a). The systematic increase is best explained by equilibrium isotopic fractionation dominated by alkali feldspar in the fractionating mineral assemblage. This is further supported by strong correlations between δ 44/40 Ca, CaO, and Eu/Eu* in the main-series samples. Implementing a Monte Carlo approach, isotopic modeling of the liquid line of descent using Rayleigh fractionation is highly consistent with the observed Ca-isotope evolution. For the first time, we confirm prominent Ca stable isotope fractionation in felsic-stage differentiation of alkaline magma and constrain the isotope fractionation factors of plagioclase and K-feldspar. Integrated with extant estimations on mineral fractionation factors from the literature, our results suggest increasing fractionation effects of rock-forming minerals with decreasing Ca content. Finally, the affirmation of significant Ca-isotope fractionation in alkaline magma by feldspar empowers the application of Ca as a versatile tracer of crustal evolution, allowing further tests in other magmatic conditions across various planetary objects.

58 GEOSCIENCES↗

“Multiagent” Screening Improves Directed Enzyme Evolution by Identifying Epistatic Mutations

Enzyme evolution has enabled numerous advances in biotechnology and synthetic biology, yet still requires many iterative rounds of screening to identify optimal mutant sequences. This is due to the sparsity of the fitness landscape, which is caused by epistatic mutations that only offer improvements when combined with other mutations. We report an approach that incorporates diverse substrate analogues in the screening process, where multiple substrates act like multiple agents navigating the fitness landscape, identifying epistatic mutant residues without a need for testing the entire combinatorial search space. We initially validate this approach by engineering a malonyl-CoA synthetase and identify numerous epistatic mutations improving activity for several diverse substrates. The majority of these mutations would have been missed upon screening for a single substrate alone. We expect that this approach can accelerate a wide array of enzyme engineering programs.

60 APPLIED LIFE SCIENCES↗