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At least 1,639 records · Page 91

RNAcentral 2021: secondary structure integration, improved sequence search and new member databases

RNAcentral is a comprehensive database of non-coding RNA (ncRNA) sequences that provides a single access point to 44 RNA resources and >18 million ncRNA sequences from a wide range of organisms and RNA types. RNAcentral now also includes secondary (2D) structure information for >13 million sequences, making RNAcentral the world’s largest RNA 2D structure database. The 2D diagrams are displayed using R2DT, a new 2D structure visualization method that uses consistent, reproducible and recognizable layouts for related RNAs. The sequence similarity search has been updated with a faster interface featuring facets for filtering search results by RNA type, organism, source database or any keyword. This sequence search tool is available as a reusable web component, and has been integrated into several RNAcentral member databases, including Rfam, miRBase and snoDB. To allow for a more fine-grained assignment of RNA types and subtypes, all RNAcentral sequences have been annotated with Sequence Ontology terms. The RNAcentral database continues to grow and provide a central data resource for the RNA community. RNAcentral is freely available at https://rnacentral.org.

59 BASIC BIOLOGICAL SCIENCES↗

Unconventional Materials Processing Using Spark Plasma Sintering

Spark plasma sintering (SPS) has gained recognition in the last 20 years for its rapid densification of hard-to-sinter conventional and advanced materials, including metals, ceramics, polymers, and composites. Herein, we describe the unconventional usages of the SPS technique developed in the field. The potential of various new modifications in the SPS technique, from pressureless to the integration of a novel gas quenching system to extrusion, has led to SPS’ evolution into a completely new manufacturing tool. The SPS technique’s modifications have broadened its usability from merely a densification tool to the fabrication of complex-shaped components, advanced functional materials, functionally gradient materials, interconnected materials, and porous filter materials for real-life applications. The broader application achieved by modification of the SPS technique can provide an alternative to conventional powder metallurgy methods as a scalable manufacturing process. The future challenges and opportunities in this emerging research field have also been identified and presented.

36 MATERIALS SCIENCE↗

LensWatch. I. Resolved HST Observations and Constraints on the Strongly Lensed Type Ia Supernova 2022qmx (“SN Zwicky”)

Supernovae (SNe) that have been multiply imaged by gravitational lensing are rare and powerful probes for cosmology. Each detection is an opportunity to develop the critical tools and methodologies needed as the sample of lensed SNe increases by orders of magnitude with the upcoming Vera C. Rubin Observatory and Nancy Grace Roman Space Telescope. The latest such discovery is of the quadruply imaged Type Ia SN 2022qmx (aka, "SN Zwicky") at z = 0.3544. SN Zwicky was discovered by the Zwicky Transient Facility in spatially unresolved data. Here we present follow-up Hubble Space Telescope observations of SN Zwicky, the first from the multicycle "LensWatch (www.lenswatch.org)" program. We measure photometry for each of the four images of SN Zwicky, which are resolved in three WFC3/UVIS filters (F475W, F625W, and F814W) but unresolved with WFC3/IR F160W, and present an analysis of the lensing system using a variety of independent lens modeling methods. We find consistency between lens-model-predicted time delays (≲1 day), and delays estimated with the single epoch of Hubble Space Telescope colors (≲3.5 days), including the uncertainty from chromatic microlensing (~1–1.5 days). Our lens models converge to an Einstein radius of ${\theta }_{{\rm{E}}}=({0.168}_{-0.005}^{+0.009})^{\prime\prime} $, the smallest yet seen in a lensed SN system. The "standard candle" nature of SN Zwicky provides magnification estimates independent of the lens modeling that are brighter than predicted by $\sim {1.7}_{-0.6}^{+0.8}$ mag and $\sim {0.9}_{-0.6}^{+0.8}$ mag for two of the four images, suggesting significant microlensing and/or additional substructure beyond the flexibility of our image-position mass models.

79 ASTRONOMY AND ASTROPHYSICS↗

Finite word length effects on digital filter implementation.

This paper is a discussion of two known techniques to analyze finite word length effects on digital filters. These techniques are extended to several additional programming forms and the results verified experimentally. A correlation of the analytical weighting functions for the two methods is made through the Mason Gain Formula.

Bowman, J. D.↗

Compact solar radiation simulator for the 400 to 1800 nm spectral region

A solar radiation simulator operating over the extended spectral range from 400 to 1800 nm is described. A source of Lambertian radiation over an extended spectral range similar to the extraterrestrial solar spectrum was required to test and calibrate the solar flux radiometer flown on the Pioneer-Venus mission. Available units did not feature the Lambertian target nor the extended spectral range. A source was designed and built using a tungsten-halogen lamp and a xenon arc, along with interference and absorption filters, and a BaSO4-coated integrating sphere. Readily available parts were used wherever possible. The spectral radiance of the test area and the calibration method are presented. The source can also be used with a quasi-collimated output beam of moderate uniformity.

Palmer, J. M.↗

Automatic evaluation of interferograms

A system for the evaluation of interference patterns was developed. For digitizing and processing of the interferograms from classical and holographic interferometers a picture analysis system based upon a computer with a television digitizer was installed. Depending on the quality of the interferograms, four different picture enhancement operations may be used: Signal averaging; spatial smoothing, subtraction of the overlayed intensity function and the removal of distortion-patterns using a spatial filtering technique in the frequency spectrum of the interferograms. The extraction of fringe loci from the digitized interferograms is performed by a foating-threshold method. The fringes are numbered using a special scheme after the removal of any fringe disconnections which appeared if there was insufficient contrast in the holograms. The reconstruction of the object function from the fringe field uses least squares approximation with spline fit. Applications are given.

Becker, F.↗

A study of helicopter gust response alleviation by automatic control

Two control schemes designed to alleviate gust-induced vibration are analytically investigated for a helicopter with four articulated blades. One is an individual blade pitch control scheme. The other is an adaptive blade pitch control algorithm based on linear optimal control theory. In both controllers, control inputs to alleviate gust response are superimposed on the conventional control inputs required to maintain the trim condition. A sinusoidal vertical gust model and a step gust model are used. The individual blade pitch control, in this research, is composed of sensors and a pitch control actuator for each blade. Each sensor can detect flapwise (or lead-lag or torsionwise) deflection of the respective blade. The acturator controls the blade pitch angle for gust alleviation. Theoretical calculations to predict the performance of this feedback system have been conducted by means of the harmonic method. The adaptive blade pitch control system is composed of a set of measurements (oscillatory hub forces and moments), an identification system using a Kalman filter, and a control system based on the minimization of the quadratic performance function.

Saito, S.↗

On the implementation of modal filters for control of structures

The most common technique for the control of structures is modal control. In modal control, the differential equations in terms of actual coordinates are replaced by a set of ordinary differential equations in terms of the modal coordinates known as modal equations. In designing feedback controls in conjunction with the modal equations, one must know the modal states for the modes targeted for control. The sensors measure actual states, however. The modal states can be estimated by means of a Luenberger observer or modal filters. The modal filters produce estimates of the modal states from distributed measurements of the states. If distributed measurements are not available, then they can be reconstructed from measurements at discrete points via interpolation. This paper examines various questions associated with the implementation of modal filters, such as the effect of choice of interpolation functions and sensors locations, as well as of measurement errors, on the state estimation process. The method is demonstrated by means of two numerical examples.

Meirovitch, L.↗

Maximum-Likelihood Parameter-Estimation Algorithm

Efficient version of maximum-likelihood algorithm devised for calculating normal-mode frequencies and damping parameters of vibrating system from experimental data where both process noise and measurement noise present. Method applicable in vibration analysis of such complicated structures as vehicles, aircraft, and spacecraft. New algorithm simplification of existing maximum-likelihood formulation using Kalman filter that allows for both process and measurement noise.

Eldred, D. B.↗

Space station resistojet system requirements and interface definition study

A conceptual design study of the resistojet orbital replacement unit (ORU) was conducted. The ORU consists of four 500-W multipropellant resistojets, fluid components downstream of the waste fluid storage subsystem, a power controller, structure, and micrometeorite shielding. The fluid components include latch valves, a water vaporizer, two pressure regulators or flow control valves, filters, check valves, fluid tubing, and interface couplings. Separate fluid components are provided for oxidizing fluids, reducing fluids and water. Different flow and power control methods were studied. The most promising methods consist of a constant pressure/on-off power control and a constant power/variable pressure control. The closed-loop power control incorporates a feedback signal which is proportional to resistojet heater temperature.

Finden, L. E.↗

Wastewater Treatment: The Natural Way

Wolverton Environmental Services, Inc. is widely acclaimed for innovative work in natural water purification which involves use of aquatic plants to remove pollutants from wastewater at a relatively low-cost. Haughton, Louisiana, visited Wolverton's artificial marsh test site and decided to use this method of wastewater treatment. They built an 11 acre sewage lagoon with a 70 by 900 foot artificial marsh called a vascular aquatic plant microbial filter cell. In the cell, microorganisms and rooted aquatic plants combine to absorb and digest wastewater pollutants, thereby converting sewage to relatively clean water. Raw waste water, after a period in the sewage lagoon, flows over a rock bed populated by microbes that digest nutrients and minerals from the sewage thus partially cleaning it. Additional treatment is provided by the aquatic plants growing in the rock bed, which absorb more of the pollutants and help deodorize the sewage.

Source record↗

Frequency to Voltage Converter Analog Front-End Prototype

The frequency to voltage converter analog front end evaluation prototype (F2V AFE) is an evaluation board designed for comparison of different methods of accurately extracting the frequency of a sinusoidal input signal. A configurable input stage is routed to one or several of five separate, configurable filtering circuits, and then to a configurable output stage. Amplifier selection and gain, filter corner frequencies, and comparator hysteresis and voltage reference are all easily configurable through the use of jumpers and potentiometers.

Mata, Carlos↗

SLS Trade Study 0058: Day of Launch (DOL) Wind Biasing

SLS heritage hardware and legacy designs have shown load exceedances at several locations during Design Analysis Cycles (DAC): MPCV Z bending moments; ICPS Electro-Mechanical Actuator (EMA) loads; Core Stage loads just downstream of Booster forward interface. SLS Buffet Loads Mitigation Task Team (BLMTT) tasked to study issue. Identified low frequency buffet load responses are a function of the vehicle's total angle of attack (AlphaTotal). SLS DOL Wind Biasing Trade team to analyze DOL wind biasing methods to limit maximum AlphaTotal in the M0.8 - 2.0 altitude region for EM-1 and EM-2 missions through investigating: Trajectory design process; Wind wavelength filtering options; Launch availability; DOL process to achieve shorter processing/uplink timeline. Trade Team consisted of personnel supporting SLS, MPCV, GSDO programs.

Decker, Ryan K.↗

NASA’s Orbital Debris Optical Program: ES-MCAT Nearing Full Operational Capability (FOC)

The NASA JAO/ES-MCAT (Eugene Stansbery Meter Class Autonomous Telescope) Facility is nearing Full Operational Capability, or FOC. ES-MCAT is now fully capable of autonomously running all observations, including: (a) monitoring weather and closing when conditions are not safe, as well as halting observations when conditions are not suitable (e.g. too cloudy) for operations, (b) start-up/shut-down nightly tasking, (c) collecting calibration data and survey or TLE-tracked data, and (d) processing all collected data, including on-chip photometry and astrometry calibrations using the GAIA star catalogue. The processed data are then further analyzed at NASA Johnson Space Center to correlate detections with known objects in the Space Surveillance Network (SSN) catalogue. MCAT can collect data of specific objects with known orbits or can search for objects with orbits similar to those of spacecraft or rocket bodies that have recently broken up. However, the primary goal for ES-MCAT is to survey the geosynchronous (GEO) belt to provide a statistical sample of the GEO debris environment for both engineering models for spacecraft designers and long-term environment evolutionary purposes. The approach for sweeping the sky to statistically survey GEO has been investigated and updated from past surveys taken by NASA and will be reported, herein referred to as the Candy Cane method. ES-MCAT’s optical performance and the limiting magnitude for the full optical system will be discussed. An analysis used to determine which filter to use for GEO surveys (SDSS r′) includes combining the reflectivity of the primary and secondary mirrors, transmission of the field corrector and CCD window, and the quantum efficiency of the CCD detector, resulting in throughput of the full optical path. This throughput is then combined with the expected typical transparency of the atmosphere at ES-MCAT’s altitude/location for the Sloan Digital Sky Survey (SDSS) g′r′i′z′ and Johnson/Kron-Cousins BVRI filters to yield expected relative throughput.

S. M. Lederer↗

Unsteady Pressure-Sensitive-Paint Shot Noise Reduction

In the study of unsteady Pressure-Sensitive Paint (uPSP) image data sets, pixel intensity values collected by Phantom cameras from multiple perspectives are used to calculate the surface pressure of an experimental model. This paper focuses on mitigation of shot noise which is introduced into the image data set by the cameras. Shot noise impacts the quality of data collected, increasing the system error in its pressure value calculations. This paper characterises statistical methods to reduce shot noise within experimental data by taking an average or weighted average across an area of pixels of their respective counts. Each combined-pixel has a higher total effective intensity value and therefore exhibits reduced noise throughout its time history. This is demonstrated by calculating the standard deviations of the combined pixel values through time, which decrease as the combined pixel area increases. Finally, these methods are compared across experimental wind tunnel conditions to examine their effectiveness at different Mach numbers. Ultimately, the results are used to recommend a blur filter type and size which will be applied to the raw image data prior to processing, as well as a minimum camera resolution for future experiments. Downstream of the filter application, the software to convert the 2D image data sets into surface pressure readings on a 3D grid use a ratio of decimation that assigns multiple pixels to each 3D grid node. This decimation ratio will also be aligned with the size of the blur filter, resulting in a more manageable data set size and compromised spatial resolution. Combined with the effect of the blur filter, the resulting pixel intensity readings will exhibit significantly reduced shot noise, reducing the magnitude of uncertainty and error in the final calculated pressure. For future tests, the camera spatial resolution must be sufficient to capture small flow and model features even after the recommended blur filter is applied. The image data set is taken from a uPSP experiment of the Space Launch System Block 1 cargo vehicle model in September 2019.

Lucy Tang↗

Unsteady Pressure-Sensitive Paint (UPSP) Shot Noise Reduction

In the study of unsteady Pressure-Sensitive Paint (uPSP) image data sets, pixel intensity values collected by Phantom cameras from multiple perspectives are used to calculate the surface pressure of an experimental model. This paper focuses on mitigation of shot noise which is introduced into the image data set by the cameras. Shot noise impacts the quality of data collected, increasing the system error in its pressure value calculations. This paper characterises statistical methods to reduce shot noise within experimental data by taking an average or weighted average across an area of pixels of their respective counts. Each combined-pixel has a higher total effective intensity value and therefore exhibits reduced noise throughout its time history. This is demonstrated by calculating the standard deviations of the combined pixel values through time, which decrease as the combined pixel area increases. Finally, these methods are compared across experimental wind tunnel conditions to examine their effectiveness at different Mach numbers. Ultimately, the results are used to recommend a blur filter type and size which will be applied to the raw image data prior to processing, as well as a minimum camera resolution for future experiments. Downstream of the filter application, the software to convert the 2D image data sets into surface pressure readings on a 3D grid use a ratio of decimation that assigns multiple pixels to each 3D grid node. This decimation ratio will also be aligned with the size of the blur filter, resulting in a more manageable data set size and compromised spatial resolution. Combined with the effect of the blur filter, the resulting pixel intensity readings will exhibit significantly reduced shot noise, reducing the magnitude of uncertainty and error in the final calculated pressure. For future tests, the camera spatial resolution must be sufficient to capture small flow and model features even after the recommended blur filter is applied. The image data set is taken from a uPSP experiment of the Space Launch System Block 1 cargo vehicle model in September 2019.

Lucy Tang↗

Statistical Analysis of Fading Power Vectors for Real-Time Atmospheric Channel Emulation

The design and testing of a free-space optical communication system requires assessment of the impact of random fluctuations in received power from a laser beam transmitted over an atmospheric channel. A number of methods for generating fading power vectors for in-lab emulation of an atmospheric channel have previously been reported. These techniques include spectral shaping and filtering of a signal from a normally distributed pseudo-random number generator, full wave optics simulations with random phase screens, and pre-recorded measurements from experimental free-space links. In this work, a statistical analysis of atmospheric fading is presented with the goal of producing a practical engineering model for the fading channel suitable for generating synthetic fade vectors in real-time for long-duration receiver testing with channel interleaving. Specifically, a parametric model is developed for turbulence-induced fade on space-to-ground links with large-aperture receivers, including aperture-averaging and the effects of aperture size on the instantaneous coupling efficiency for mode- limited receivers. In particular, we analyze the probability density function and temporal power spectrum for fluctuations of the coupling efficiency for few-mode fibers in a range of turbulence conditions.

free-space optical communication↗