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At least 1,639 records · Page 91

Seascape genomics of eastern oyster ( Crassostrea virginica ) along the Atlantic coast of Canada

Abstract Interactions between environmental factors and complex life‐history characteristics of marine organisms produce the genetic diversity and structure observed within species. Our main goal was to test for genetic differentiation among eastern oyster populations from the coastal region of Canadian Maritimes against expected genetic homogeneity caused by historical events, taking into account spatial and environmental (temperature, salinity, turbidity) variation. This was achieved by genotyping 486 individuals originating from 13 locations using RADSeq. A total of 11,321 filtered SNPs were used in a combination of population genomics and environmental association analyses. We revealed significant neutral genetic differentiation (mean F ST = 0.009) between sampling locations, and the occurrence of six major genetic clusters within the studied system. Redundancy analyses (RDAs) revealed that spatial and environmental variables explained 3.1% and 4.9% of the neutral genetic variation and 38.6% and 12.2% of the putatively adaptive genetic variation, respectively. These results indicate that these environmental factors play a role in the distribution of both neutral and putatively adaptive genetic diversity in the system. Moreover, polygenic selection was suggested by genotype–environment association analysis and significant correlations between additive polygenic scores and temperature and salinity. We discuss our results in the context of their conservation and management implications for the eastern oyster.

Bernatchez, Simon↗

SU-E-T-183: Feasibility of Extreme Dose Escalation for Glioblastoma Multiforme Using 4π Radiotherapy

Purpose: GBM recurrence primarily occurs inside or near the high-dose radiation field of original tumor site requiring greater than 100 Gy to significantly improve local control. We utilize 4π non-coplanar radiotherapy to test the feasibility of planning target volume (PTV) margin expansions or extreme dose escalations without incurring additional radiation toxicities. Methods: 11 GBM patients treated with VMAT to a prescription dose of 59.4 Gy or 60 Gy were replanned with 4π. Original VMAT plans were created with 2 to 4 coplanar or non-coplanar arcs using 3 mm hi-res MLC. The 4π optimization, using 5 mm MLC, selected and inverse optimized 30 beams from a candidate pool of 1162 beams evenly distributed through 4π steradians. 4π plans were first compared to clinical plans using the same prescription dose. Two more studies were then performed to respectively escalate the GTV and PTV doses to 100 Gy, followed by a fourth plan expanding the PTV by 5 mm and maintaining the prescription dose. Results: The standard 4π plan significantly reduced (p<0.01) max and mean doses to critical structures by a range of 47.0–98.4% and 61.0–99.2%, respectively. The high dose PTV/high dose GTV/expanded PTV studies showed a reduction (p<0.05) or unchanged* (p>0.05) maximum dose of 72.1%/86.7%/77.1% (chiasm), 7.2%*/27.7%*/30.7% (brainstem), 39.8%*/84.2%/51.9%* (spinal cord), 69.0%/87.0%/66.9% (L eye), 76.2%/88.1%/84.1% (R eye), 95.0%/98.6%/97.5% (L lens), 93.9%/98.8%/97.6% (R lens), 74.3%/88.5%/72.4% (L optical nerve), 80.4%/91.3%/75.7% (R optical nerve), 64.8%/84.2%/44.9%* (L cochlea), and 85.2%/93.0%/78.0% (R cochlea), respectively. V30 and V36 for both brain and (brain - PTV) were reduced for all cases except the high dose PTV plan. PTV dose coverage increased for all 4π plans. Conclusion: Extreme dose escalation or further margin expansion is achievable using 4π, maintaining or reducing OAR doses. This study indicates that clinical trials employing 4π delivery using prescription doses up to 100 Gy are feasible. Funding support partially contributed by Varian.

60 APPLIED LIFE SCIENCES↗

Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance

To our knowledge, this is the first study to identify the bacteriophage distribution in a groundwater ecosystem shedding light on their prevalence and distribution across metal-contaminated and background sites. Our study is uniquely based on selective sequencing of solely the extrachromosomal elements of a microbiome followed by analysis for viral signatures, thus establishing a more focused approach for phage identifications.

59 BASIC BIOLOGICAL SCIENCES↗

Dissolution of Used Nuclear Fuel using a TBP/n-paraffin Solvent

The complete recycle of used nuclear fuel (UNF) is desirable to recover the energy value from the remaining U and the higher actinides produced during fuel irradiation; however, the construction of a large-scale reprocessing facility is prohibitively expensive. A simplified flowsheet with a reduced equipment footprint is needed to improve the economic viability. To address this issue, we evaluated a hybrid process which combines the dissolution of UNF pretreated (oxidized) for tritium removal in a tributyl phosphate (TBP) solvent with the solvent extraction cycles required for recovery of the actinide and lanthanide elements. To demonstrate the feasibility of the hybrid process, we prepared actinide solid solutions containing selected fission product elements as surrogates for pretreated, irradiated light water reactor fuel. The distribution of the actinide and fission product elements was measured between the solvent and residual solids to determine dissolution efficiencies. Dissolution of the solid solutions in the TBP solvent was effective for the recovery of both the actinide and lanthanide elements. An increase in the TBP concentration and temperature improved the dissolution efficiencies for these elements. Two-stage dissolutions were successfully used to recover nearly all the actinides and most of the lanthanides from the solid solutions. Our data indicate that most of the fission products generated during fuel irradiation except for the lanthanides and Tc (based on data for Re) would remain in the undissolved solids. The Am/Cm, lanthanides, and other fission product are easily scrubbed from the solvent by contact with nitric acid generating a pure U/Np/Pu stream.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Calculation of the effect of slit size on emittance measurements made by a two-slit scanner

Parallel slit-slit devices are commonly used to measure the transverse emittance of a particle beam, selecting a portion of the beam with the front slit and measuring the angular distribution with the rear. This paper calculates the effect of finite slit sizes on measured emittance and Twiss functions in the case of Gaussian spatial and angular distributions of the oncoming beam. A formula for recovering the true emittance from the measured values is derived.

43 PARTICLE ACCELERATORS↗

The Quantum Alternating Operator Ansatz on Maximum k -Vertex Cover

The Quantum Alternating Operator Ansatz is a generalization of the Quantum Approximate Optimization Algorithm (QAOA) designed for finding approximate solutions to combinatorial optimization problems with hard constraints. In this paper, we study Maximum k-Vertex Cover under this ansatz due to its modest complexity, while still being more complex than the well studied problems of Max-Cut and Max E3-LIN2. Our approach includes (i) a performance comparison between easy-to-prepare classical states and Dicke states as starting states, (ii) a performance comparison between two XY -Hamiltonian mixing operators: the ring mixer and the complete graph mixer, (iii) an analysis of the distribution of solutions via Monte Carlo sampling, and (iv) the exploration of efficient angle selection strategies.

97 MATHEMATICS AND COMPUTING↗

Predictive Contaminant Transport Simulation with the P2R Model for the Composite Analysis Base Case

In order to meet the requirements of U.S. Department of Energy (DOE) in DOE O 435.1 Chg. 1, Radioactive Waste Management, a composite analysis (CA) must be completed for the Central Plateau at the Hanford Site. The updated Hanford Site CA requires estimates of fate and transport of radionuclides in the groundwater from multiple sources within and downgradient of the Central Plateau. Numerical simulations using the MT3D-MST computer code were conducted to evaluate the fate and transport of existing distributions of 16 radionuclides as identified in CP-62184, Hanford Site Composite Analysis: Radionuclide Selection for Groundwater Pathway Evaluation: tritium (H-3), carbon-14 (C-14), chloride- 36 (Cl-36), strontium-90 (Sr-90), technetium-99 (Tc-99), rhenium-187 (Re-187), radium-226 (Ra-226), thorium-230 (Th-230), uranium-232 (U-232), uranium-232 (U-232), uranium-233 (U-233), uranium-234 (U-234), uranium-235 (U-235), uranium-236 (U-236), neptunium-237 (Np-237), and uranium-238 (U- 238). This document details the application of the P2R Model version 8.3 to predict the fate and transport of contaminants in groundwater on the Central Plateau for the 10,052 year simulation to support the CA. The simulation of fate and transport of contaminants reported in this environmental calculation file (ECF) will support dose predictions as part of the updated Hanford Site CA.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Integrated Land Suitability Assessment for Depots Siting in a Sustainable Biomass Supply Chain

A sustainable biomass supply chain would require not only an effective and fluid transportation system with a reduced carbon footprint and costs, but also good soil characteristics ensuring durable biomass feedstock presence. Unlike existing approaches that fail to account for ecological factors, this work integrates ecological as well as economic factors for developing sustainable supply chain development. For feedstock to be sustainably supplied, it necessitates adequate environmental conditions, which need to be captured in supply chain analysis. Using geospatial data and heuristics, we present an integrated framework that models biomass production suitability, capturing the economic aspect via transportation network analysis and the environmental aspect via ecological indicators. Production suitability is estimated using scores, considering both ecological factors and road transportation networks. These factors include land cover/crop rotation, slope, soil properties (productivity, soil texture, and erodibility factor) and water availability. This scoring determines the spatial distribution of depots with priority to fields scoring the highest. Two methods for depot selection are presented using graph theory and a clustering algorithm to benefit from contextualized insights from both and potentially gain a more comprehensive understanding of biomass supply chain designs. Graph theory, via the clustering coefficient, helps determine dense areas in the network and indicate the most appropriate location for a depot. Clustering algorithm, via K-means, helps form clusters and determine the depot location at the center of these clusters. An application of this innovative concept is performed on a case study in the US South Atlantic, in the Piedmont region, determining distance traveled and depot locations, with implications on supply chain design. The findings from this study show that a more decentralized depot-based supply chain design with 3depots, obtained using the graph theory method, can be more economical and environmentally friendly compared to a design obtained from the clustering algorithm method with 2 depots. In the former, the distance from fields to depots totals 801,031,476 miles, while in the latter, it adds up to 1,037,606,072 miles, which represents about 30% more distance covered for feedstock transportation.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Composite Spectral Energy Distributions and Infrared–Optical Colors of Type 1 and Type 2 Quasars

We present observed mid-infrared and optical colors and composite spectral energy distributions (SEDs) of type 1 (broad-line) and 2 (narrow-line) quasars selected from Sloan Digital Sky Survey (SDSS) spectroscopy. A significant fraction of powerful quasars are obscured by dust and are difficult to detect in optical photometric or spectroscopic surveys. However, these may be more easily identified on the basis of mid-infrared (MIR) colors and SEDs. Using samples of SDSS type 1 and 2 matched in redshift and [O iii] luminosity, we produce composite rest-frame 0.2–15 μm SEDs based on SDSS, UKIDSS, and Wide-field Infrared Survey Explorer photometry and perform model fits using simple galaxy and quasar SED templates. The SEDs of type 1 and 2 quasars are remarkably similar, with the differences explained primarily by the extinction of the quasar component in the type 2 systems. For both types of quasar, the flux of the active galactic nucleus (AGN) relative to the host galaxy increases with AGN luminosity (L{sub [OIII]}) and redder observed MIR color, but we find only weak dependencies of the composite SEDs on mechanical jet power as determined through radio luminosity. We conclude that luminous quasars can be effectively selected using simple MIR color criteria similar to those identified previously (W1--W2>0.7; Vega), although these criteria miss many heavily obscured objects. Obscured quasars can be further identified based on optical–IR colors (for example, (u--W3 [AB])>1.4(W1--W2 [Vega])+3.2). These results illustrate the power of large statistical studies of obscured quasars selected on the basis of MIR and optical photometry.

79 ASTRONOMY AND ASTROPHYSICS↗

The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history

The columbine genus Aquilegia is a classic example of an adaptive radiation, involving a wide variety of pollinators and habitats. Here we present the genome assembly of A. coerulea ‘Goldsmith’, complemented by high-coverage sequencing data from 10 wild species covering the world-wide distribution. Our analyses reveal extensive allele sharing among species and demonstrate that introgression and selection played a role in the Aquilegia radiation. We also present the remarkable discovery that the evolutionary history of an entire chromosome differs from that of the rest of the genome – a phenomenon that we do not fully understand, but which highlights the need to consider chromosomes in an evolutionary context.

59 BASIC BIOLOGICAL SCIENCES↗

Study of inducer load and stress, volume 2

A program of analysis, design, fabrication and testing has been conducted to develop computer programs for predicting rocket engine turbopump inducer hydrodynamic loading, stress magnitude and distribution, and vibration characteristics. Methods of predicting blade loading, stress, and vibration characteristics were selected from a literature search and used as a basis for the computer programs. An inducer, representative of typical rocket engine inducers, was designed, fabricated, and tested with special instrumentation selected to provide measurements of blade surface pressures and stresses. Data from the tests were compared with predicted values and the computer programs were revised as required to improve correlation. For Volume 1 see N71-20403. For Volume 2 see N71-20404.

Source record↗

Anisotropies in the interplanetary intensity of solar protons with energies greater than 0.3 MeV.

By using Explorer 35 interplanetary observations of solar protons with energies greater than 0.3 MeV during ten selected solar events (1967-1970) the tine dependence of intensity and of the angular distribution of intensity has been studied for the first time in the sub-MeV range of energy. The respective contributions of diffusive and convective transport are resolved. Results are qualitatively similar to those of McCracken et al. (1968, 1971) in the energy range from 7.5to 45 MeV; but, as was expected, convective transport is found to be relatively more important at the lower energies. The convective component of the anisotropy vector yields values of the solar wind velocity in good agreement with directly measured values.

Innanen, W. G.↗

Microstructure of the solar wind

In this review microstructure is understood to summarize the dynamical properties of the solar wind that enter the fluid equations, usually employed to describe the overall flow, only in one or the other averaged form. Thus, first a description of the kinetic picture of the solar wind is given; it mainly involves the structure of the particle distributions in velocity space and associated instabilities. Waves and discontinuities are discussed next. Two selected examples are mentioned where the effects of waves and discontinuities play a role. Specific physical properties of the interplanetary magnetic irregularity spectrum and its relevance for cosmic ray propagation are discussed at the end.

Voelk, H. J.↗

Projection of distributed-collector solar-thermal electric power plant economics to years 1990-2000

A preliminary comparative evaluation of distributed-collector solar thermal power plants was undertaken by projecting power plant economics of selected systems to the 1990 to 2000 time frame. The selected systems include: (1) fixed orientation collectors with concentrating reflectors and vacuum tube absorbers, (2) one axis tracking linear concentrator including parabolic trough and variable slat designs, and (3) two axis tracking parabolic dish systems including concepts with small heat engine-electric generator assemblies at each focal point as well as approaches having steam generators at the focal point with pipeline collection to a central power conversion unit. Comparisons are presented primarily in terms of energy cost and capital cost over a wide range of operating load factors. Sensitvity of energy costs for a range of efficiency and cost of major subsystems/components is presented to delineate critical technological development needs.

Fujita, T.↗

Solid State Remote Power Controllers for high voltage DC distribution systems

Presently, hybrid Remote Power Controllers (RPC's) are in production and prototype units are available for systems utilizing 28VDC, 120VDC, 115VAC/400 Hz and 230VAC/400 Hz. This paper describes RPC development in a new area of application: HVDC distribution systems utilizing 270/300VDC. Two RPC current ratings, 1 amp and 2 amps, were selected for development as they are adequate to control 90% of projected system loads. The various aspects and trade-offs encountered in circuit development are discussed with special focus placed on the circuits that see the duress of the high dc potentials. The comprehensive evaluation tests are summarized which confirmed the RPC compliance with the specification and with system/load compatibility requirements. In addition, present technology status and new applications are summarized.

Billings, W. W.↗

A limit to the X-ray luminosity of nearby normal galaxies

The hypothesis that normal galaxies are on the average more luminous in the X-ray region than the Milky Way galaxy or M31 and therefore are possible candidates for the low-luminosity sources of the 2 to 60 keV extragalactic diffuse background is tested. Data from the A-2 detectors on the HEAO-1 spacecraft were examined for emission from positions coincident with 76 selected normal galaxies, and upper limits to the average galactic luminosity for various luminosity distributions resulting in the observed count rate distribution were determined. For uniform and exponential galactic luminosity distributions, limits of 2.7 x 10 to the 38th erg/sec and 3.4 x 10 to the 38th erg/sec, respectively, at the 90% confidence level were obtained. It is shown that the Hubble-constant-independent upper limit to galactic emissivity is less than 1% of the diffuse background emissivity, indicating that normal galaxies are not responsible for the diffuse X-ray background and have luminosities comparable to that of the Galaxy.

Worrall, D. M.↗

Spectrophotometry of Michigan-Tololo quasars

The Michigan-Tololo sample of quasars is discussed using observational data for 48% of this sample. Emission-line quasar characteristics are confirmed for 80% of the objects observed, including at least four new quasars with spectral features indicative of 'supernova-like' outflow. Approximately 73% of the redshifts predicted from the discovery plates are found to be accurate, with a mean error in z of 0.03; a large range of z (from about 0.1 to 3.16) is represented in the sample. The interpretation of the observed redshift distribution for quasars is strongly dependent upon the significance ascribed to wavelength-dependent selection effects. It appears that the behavior of the comoving quasar density above z = 2.0 may be represented by a constant or an exponential increase.

Lewis, D. W.↗

Cycles till failure of silver-zinc cells with competing failure modes - Preliminary data analysis

The data analysis of cycles to failure of silver-zinc electrochemical cells with competing failure modes is presented. The test ran 129 cells through charge-discharge cycles until failure; preliminary data analysis consisted of response surface estimate of life. Batteries fail through low voltage condition and an internal shorting condition; a competing failure modes analysis was made using maximum likelihood estimation for the extreme value life distribution. Extensive residual plotting and probability plotting were used to verify data quality and selection of model.

Sidik, S. M.↗