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At least 1,639 records · Page 91

Two-fluid Numerical Simulations of Solar Spicules

We aim to study the formation and evolution of solar spicules by means of numerical simulations of the solar atmosphere. With the use of newly developed JOANNA code, we numerically solve two-fluid (for ions + electrons and neutrals) equations in 2D Cartesian geometry. We follow the evolution of a spicule triggered by the time-dependent signal in ion and neutral components of gas pressure launched in the upper chromosphere. We use the potential magnetic field, which evolves self-consistently, but mainly plays a passive role in the dynamics. Our numerical results reveal that the signal is steepened into a shock that propagates upward into the corona. The chromospheric cold and dense plasma lags behind this shock and rises into the corona with a mean speed of 20–25 km s{sup −1}. The formed spicule exhibits the upflow/downfall of plasma during its total lifetime of around 3–4 minutes, and it follows the typical characteristics of a classical spicule, which is modeled by magnetohydrodynamics. The simulated spicule consists of a dense and cold core that is dominated by neutrals. The general dynamics of ion and neutral spicules are very similar to each other. Minor differences in those dynamics result in different widths of both spicules with increasing rarefaction of the ion spicule in time.

79 ASTRONOMY AND ASTROPHYSICS↗

GPU accelerated flow solver for direct numerical simulation of turbulent flows

Graphical processing units (GPUs), characterized by significant computing performance, are nowadays very appealing for the solution of computationally demanding tasks in a wide variety of scientific applications. However, to run on GPUs, existing codes need to be ported and optimized, a procedure which is not yet standardized and may require non trivial efforts, even to high-performance computing specialists. In the present paper we accurately describe the porting to CUDA (Compute Unified Device Architecture) of a finite-difference compressible Navier–Stokes solver, suitable for direct numerical simulation (DNS) of turbulent flows. Porting and validation processes are illustrated in detail, with emphasis on computational strategies and techniques that can be applied to overcome typical bottlenecks arising from the porting of common computational fluid dynamics solvers. We demonstrate that a careful optimization work is crucial to get the highest performance from GPU accelerators. The results show that the overall speedup of one NVIDIA Tesla S2070 GPU is approximately 22 compared with one AMD Opteron 2352 Barcelona chip and 11 compared with one Intel Xeon X5650 Westmere core. The potential of GPU devices in the simulation of unsteady three-dimensional turbulent flows is proved by performing a DNS of a spatially evolving compressible mixing layer.

97 MATHEMATICS AND COMPUTING↗

Design of a Model Reference Adaptive Controller for an Unmanned Air Vehicle

This paper presents the "Adaptive Control Technology for Safe Flight (ACTS)" architecture, which consists of a non-adaptive controller that provides satisfactory performance under nominal flying conditions, and an adaptive controller that provides robustness under off nominal ones. The design and implementation procedures of both controllers are presented. The aim of these procedures, which encompass both theoretical and practical considerations, is to develop a controller suitable for flight. The ACTS architecture is applied to the Generic Transport Model developed by NASA-Langley Research Center. The GTM is a dynamically scaled test model of a transport aircraft for which a flight-test article and a high-fidelity simulation are available. The nominal controller at the core of the ACTS architecture has a multivariable LQR-PI structure while the adaptive one has a direct, model reference structure. The main control surfaces as well as the throttles are used as control inputs. The inclusion of the latter alleviates the pilot s workload by eliminating the need for cancelling the pitch coupling generated by changes in thrust. Furthermore, the independent usage of the throttles by the adaptive controller enables their use for attitude control. Advantages and potential drawbacks of adaptation are demonstrated by performing high fidelity simulations of a flight-validated controller and of its adaptive augmentation.

Crespo, Luis G.↗

Toward the core-edge coupling of delta-f and total-f gyrokinetic models

The coupling of core reduced delta-f and edge total-f gyrokinetic models could enable a significant speed-up of the whole device modeling simulations. It is thus interesting to compare these models in the core where they will be coupled. The main difference between these models is the presence of the zeroth order term on the right-hand side of the total-f gyrokinetic equation. This term is responsible for driving a radial electric field that is also associated with Geodesic acoustic mode-like oscillations. To investigate the coupling between these models, the subsequent large-scale gyrokinetic 3D turbulence simulations have been performed starting from an already saturated gyrokinetic axisymmetric equilibria (collisions are not included). This work has also been extended to couple different axisymmetric and turbulent models available in XGC. It is shown that the radial electric field and its drive have to be taken care of consistently while coupling different models together.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Geomagnetic Variability and Predictability

The Earth's magnetic field varies on time scales from seconds to millions of years. These variations can be measured directly by ground observatories and satellites, and indirectly through laboratories. They are from different electromagnetic processes in magnetosphere and ionosphere (external), ocean and crust (surface), and deep in the Earth's fluid outer core (internal). Of the measured magnetic signals, 95% is from the core, and is called the core field, or internal field. Variation of the core field, often called the geomagnetic secular variation (SV), is the manifestation of the magnetohydrodynamic processes in the core. Therefore, SV provides rich information on the core dynamical state that is then critical for understanding the geophysical mechanisms of the SV, the core-mantle interactions, and contribution of mass transport inside the core on Earth's gravity variation. Traditionally, the core state is probed via two independent methodologies: core flow inversion from the observed SV, and pure numerical dynamo simulation. The former is driven by observations, but does not include necessary interactions among physical variables; the latter is dynamically consistent, but is not constrained by any observation. Therefore, both are very limited in providing appropriate estimates of the core state. To avoid these limitations, a new approach, geomagnetic data assimilation, appears recently. In this approach, simulation results (model forecasts) are constantly corrected with observations, the corrected solutions (analysis), are then used as the initial conditions to make more accurate forecasts of future. Recent studies have demonstrated successfully that assimilation solutions are different from those of free running models. These new solutions are better estimates of the core state, and have been used to provide accurate prediction of SV for the period from 2010 to 2015. This prediction is part of the IGRF field model for international community applications.

Kuang, Weijia↗

Performance analysis of fully explicit and fully implicit solvers within a spectral element shallow-water atmosphere model

In this study, explicit Runge–Kutta methods and implicit multistep methods utilizing a Newton–Krylov nonlinear solver are evaluated for a range of configurations of the shallow-water dynamical core of the spectral element community atmosphere model to evaluate their computational performance. These configurations are designed to explore the attributes of each method under different but relevant model usage scenarios including varied spectral order within an element, static regional refinement, and scaling to the largest problem sizes. This analysis is performed within the shallow-water dynamical core option of a full climate model code base to enable a wealth of simulations for study, with the aim of informing solver development within the more complete hydrostatic dynamical core used for climate research. The limitations and benefits to using explicit versus implicit methods, with different parameters and settings, are discussed in light of the trade-offs with Message Passing Interface (MPI) communication and memory and their inherent efficiency bottlenecks. Given the performance behavior across the configurations analyzed here, the recommendation for future work using the implicit solvers is conditional based on scale separation and the stiffness of the problem. For the regionally refined configurations, the implicit method has about the same efficiency as the explicit method, without considering efficiency gains from a preconditioner. The potential for improvement using a preconditioner is greatest for higher spectral order configurations, where more work is shifted to the linear solver. Finally, initial simulations with OpenACC directives to utilize a Graphics Processing Unit (GPU) when performing function evaluations show improvements locally, and that overall gains are possible with adjustments to data exchanges.

58 GEOSCIENCES↗

A GPU-accelerated package for simulation of flow in nanoporous source rocks with many-body dissipative particle dynamics

Mesoscopic simulations of hydrocarbon flow in source shales are concerning, in part due to the heterogeneous shale pores with sizes ranging from a few nanometers to a few micrometers. Additionally, the sub-continuum fluid–fluid and fluid–solid interactions in nano- to micro-scale shale pores, which are physically and chemically sophisticated, must be captured. To address those challenges, we present a GPU-accelerated package for simulation of flow in nano- to micro-pore networks with a many-body dissipative particle dynamics (mDPD) mesoscale model. Based on a fully distributed parallel paradigm, the code offloads all intensive workloads on GPUs. Other advancements, such as smart particle packing and no-slip boundary condition in complex pore geometries, are also implemented for the construction and the simulation of the realistic shale pores from 3D nanometer-resolution stack images. Our code is validated for accuracy and compared against the CPU counterpart for speedup. In our benchmark tests, the code delivers nearly perfect strong scaling and weak scaling (with up to 512 million particles) on up to 512 K20X GPUs on Oak Ridge National Laboratory’s (ORNL) Titan supercomputer. Moreover, a single-GPU benchmark on ORNL’s SummitDev and IBM’s AC922 suggests that the host-to-device NVLink can boost performance over PCIe by a remarkable 40%. Lastly, we demonstrate, through a flow simulation in realistic shale pores, that the CPU counterpart requires 840 Power9 cores to rival the performance delivered by our package with four V100 GPUs on ORNL’s Summit architecture. This simulation package enables quick-turnaround and high-throughput mesoscopic numerical simulations for exploring complex flow phenomena in nano- to micro-porous rocks with realistic pore geometries.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Multilayered Ordered Protein Arrays Self-Assembled from a Mixed Population of Virus-like Particles

Biology shows many examples of spatially controlled assembly of cells and biomacromolecules into hierarchically organized structures, to which many of the complex biological functions are attributed. While such biological structures have inspired the design of synthetic materials, it is still a great challenge to control the spatial arrangement of individual building blocks when assembling multiple types of components into bulk materials. Here, in this study, we report self-assembly of multilayered, ordered protein arrays from mixed populations of virus-like particles (VLPs). We systematically tuned the magnitude of the surface charge of the VLPs via mutagenesis to prepare four different types of VLPs for mixing. A mixture of up to four types of VLPs selectively assembled into higher-order structures in the presence of oppositely charged dendrimers during a gradual lowering of the ionic strength of the solution. The assembly resulted in the formation of three-dimensional ordered VLP arrays with up to four distinct layers including a central core, with each layer comprising a single type of VLP. A coarse-grained computational model was developed and simulated using molecular dynamics to probe the formation of the multilayered, core-shell structure. Our findings establish a simple and versatile bottom-up strategy to synthesize multilayered, ordered materials by controlling the spatial arrangement of multiple types of nanoscale building blocks in a one-pot fabrication.

59 BASIC BIOLOGICAL SCIENCES↗

Building Durable Multimetallic Electrocatalysts from Intermetallic Seeds

When combined with earth-abundant metals, Pt-based alloy nanoparticles (NPs) can be cost-effective electrocatalysts. However, these NPs can experience leaching of non-noble-metal components under harsh electrocatalytic conditions. In this work, the Skrabalak group has demonstrated a novel NP construct in which Pt-based random alloy surfaces are stabilized against non-noble-metal leaching by their deposition onto intermetallic seeds. These core@shell NPs are highly durable electrocatalysts, with the ability to tune catalytic performance by the core@shell architecture, surface alloy composition, and NP shape. This versatility was demonstrated in a model system in which random alloy (ra-) PtM surfaces were deposited onto ordered intermetallic (i-) PdCu seeds using seed-mediated co-reduction (SMCR). In the initial demonstration, ra-PtCu shells were deposited on i-PdCu seeds, with these core@shell NPs exhibiting higher specific and mass activities for the oxygen reduction reaction (ORR) when compared to similarly sized ra-PtCu NPs. These NPs also showed outstanding durability, maintaining ~85% in specific activity after 5000 cycles. Characterization of the NPs after use revealed minimal loss of Cu. The activity enhancement was attributed to the strained surface that arises from the lattice mismatch between the intermetallic core and random alloy surface. The outstanding durability was attributed to the ordered structure of the intermetallic core. The origin of this durability enhancement was investigated by classical molecular dynamics simulations, where Pt atoms were found to have a lower potential energy when deposited on an intermetallic core than when deposited on a random alloy core. Also, ordering of Cu atoms at the core@shell interface appears to enhance the overall binding between the core and the shell materials. Inspired by this initial demonstration, SMCR has been used to achieve shells of different random alloy compositions, PtM (M = Ni, Co, Cu, or Fe). This advance is significant because ligand effects vary as a function of PtM identity and Pt/M ratio. These features also influence the degree of surface strain imparted from the lattice mismatch between the core and shell materials. Like the initial demonstration, standout features of these core@shell NPs were high durability and resistance to non-noble metal leaching. Moving forward, efforts have been directed toward integrating shape-control to this core@shell NP construct. This integration is motivated by the shape-dependent catalytic performance of NPs derived from the selective expression of specific facets. Considering the initial i-PdCu@ra-PtCu system, NPs with a cubic shape have been achieved by judicious selection of capping ligands during SMCR. Evaluation of these NPs as catalysts for the electrooxidation of formic acid found that the nanocubic shape enhances catalytic performance compared to similar core@shell NPs with a spherical morphology. We envision that SMCR can be applied to other NP systems to achieve highly durable catalysts as the syntheses of monodisperse and shape-controlled intermetallic seeds are advanced. This Account highlights the role of intermetallic cores in providing more durable electrocatalysts. More broadly, the versatility of SMCR is highlighted as a route to integrate architecture, alloy surfaces, and shape within one NP system, and how this achievement is inspiring new high-performance and robust catalysts is discussed.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Viscous organic aerosol particles in the upper troposphere: diffusivity-controlled water uptake and ice nucleation?

Here, new measurements of water diffusion in secondary organic aerosol (SOA) material produced by oxidation of α-pinene and in a number of organic/inorganic model mixtures (3-methylbutane-1,2,3-tricarboxylic acid (3-MBTCA), levoglucosan, levoglucosan/NH 4 HSO 4 , raffinose) are presented. These indicate that water diffusion coefficients are determined by several properties of the aerosol substance and cannot be inferred from the glass transition temperature or bouncing properties. Our results suggest that water diffusion in SOA particles is faster than often assumed and imposes no significant kinetic limitation on water uptake and release at temperatures above 220 K. The fast diffusion of water suggests that heterogeneous ice nucleation on a glassy core is very unlikely in these systems. At temperatures below 220 K, model simulations of SOA particles suggest that heterogeneous ice nucleation may occur in the immersion mode on glassy cores which remain embedded in a liquid shell when experiencing fast updraft velocities. The particles absorb significant quantities of water during these updrafts which plasticize their outer layers such that these layers equilibrate readily with the gas phase humidity before the homogeneous ice nucleation threshold is reached. Glass formation is thus unlikely to restrict homogeneous ice nucleation. Only under most extreme conditions near the very high tropical tropopause may the homogeneous ice nucleation rate coefficient be reduced as a consequence of slow condensed-phase water diffusion. Since the differences between the behavior limited or non limited by diffusion are small even at the very high tropical tropopause, condensed-phase water diffusivity is unlikely to have significant consequences on the direct climatic effects of SOA particles under tropospheric conditions.

54 ENVIRONMENTAL SCIENCES↗

IMPACTS OF COLLECTIVE NEUTRINO OSCILLATIONS ON CORE-COLLAPSE SUPERNOVA EXPLOSIONS

By performing a series of one- and two-dimensional (1D and 2D) hydrodynamic simulations with spectral neutrino transport, we study possible impacts of collective neutrino oscillations on the dynamics of core-collapse supernovae. To model the spectral swapping, which is one of the possible outcome of the collective neutrino oscillations, we parameterize the onset time when the spectral swap begins, the radius where the spectral swap occurs, and the threshold energy above which the spectral interchange between heavy-lepton neutrinos and electron/anti-electron neutrinos takes place. By doing so, we systematically study how the neutrino heating enhanced by the spectral swapping could affect the shock evolution as well as the matter ejection. We also investigate the progenitor dependence using a suite of progenitor models (13, 15, 20, and 25 M{sub sun}). We find that there is a critical heating rate induced by the spectral swapping that triggers explosions, and which significantly differs between the progenitors. The critical heating rate is generally smaller for 2D than for 1D due to the multidimensionality that enhances the neutrino heating efficiency. For the progenitors employed in this paper, the final remnant masses are estimated to range between 1.1-1.5 M{sub sun}. For our 2D model of the 15 M{sub sun} progenitor, we find a set of oscillation parameters that could account for strong supernova explosions ({approx}10{sup 51} erg), simultaneously leaving behind a remnant mass close to {approx}1.4 M{sub sun}.

79 ASTRONOMY AND ASTROPHYSICS↗

Circumstellar Disks and Outflows in Turbulent Molecular Cloud Cores: Possible Formation Mechanism for Misaligned Systems

We investigate the formation of circumstellar disks and outflows subsequent to the collapse of molecular cloud cores with the magnetic field and turbulence. Numerical simulations are performed by using an adaptive mesh refinement to follow the evolution up to ∼1000 years after the formation of a protostar. In the simulations, circumstellar disks are formed around the protostars; those in magnetized models are considerably smaller than those in nonmagnetized models, but their size increases with time. The models with stronger magnetic fields tend to produce smaller disks. During evolution in the magnetized models, the mass ratios of a disk to a protostar is approximately constant at ∼1%–10%. The circumstellar disks are aligned according to their angular momentum, and the outflows accelerate along the magnetic field on the 10–100 au scale; this produces a disk that is misaligned with the outflow. The outflows are classified into two types: a magnetocentrifugal wind and a spiral flow. In the latter, because of the geometry, the axis of rotation is misaligned with the magnetic field. The magnetic field has an internal structure in the cloud cores, which also causes misalignment between the outflows and the magnetic field on the scale of the cloud core. The distribution of the angular momentum vectors in a core also has a non-monotonic internal structure. This should create a time-dependent accretion of angular momenta onto the circumstellar disk. Therefore, the circumstellar disks are expected to change their orientation as well as their sizes in the long-term evolutions.

79 ASTRONOMY AND ASTROPHYSICS↗

Development of an Advanced Multiphysics Simulation Capability for Radiant's Microreactor Design

Argonne National Laboratory and Idaho National Laboratory, through a Department of Energy Gateway for Accelerated Innovation in Nuclear Voucher, supported key analysis needs of Radiant related to (i) air jacket thermal fluid performance, (ii) evaluation of decay heat source terms defining air jacket technical requirements, and (iii) assessment of modeling methodologies employed for core analysis. All of these activities center on numerical simulation of various aspects of Kaleidos using the Multiphysics Object-Oriented Simulation Environment (MOOSE) framework, the Cardinal multiphysics application, the OpenMC Monte Carlo code, and the Nek5000 computational fluid dynamics (CFD) code. This project builds upon an earlier Nuclear Energy Advanced Modeling and Simulation (NEAMS) Thermal-Hydraulic (T/H) Center of Excellence (CoE) project focused on initial demonstration of Cardinal multiphysics simulation of High Temperature Gas Reactors (HTGRs) and now focuses on Radiant’s Kaleidos concept.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Simulation of the SPARC plasma boundary with the UEDGE code

Here in this work, the UEDGE edge transport code is used to examine conditions in the SPARC divertor and edge plasma for various levels of carbon impurity and power from the core (P SOL ). A double-null magnetic configuration is simulated assuming up-down symmetry in geometry and physics. The anomalous heat and particle transport coefficients are tuned to match empirical predictions for SPARC's midplane density profiles, target plate heat flux profiles, and inner/outer divertor power sharing. Convective transport is included on the low-field side, while on the high-field side the transport is modeled as purely diffusive. Hydrogen neutrals are modeled as a fluid with inertial effects, and a carbon impurity is included using the fixed-fraction model. We find that detachment induced by impurity seeding could significantly reduce the heat flux to the divertor surfaces in the SPARC tokamak. At P SOL = 28 MW (the value predicted for SPARC's full-power H-mode scenario) cases with both divertor legs detached were obtained with a carbon impurity fraction between 0.3%–1.4%, far below Z eff limits for SPARC. When the plasma in the outer leg is detached, the peak heat flux density perpendicular to the target plate is below 1 MW m -2 , electron and ion temperatures are less than 1.5 eV, and momentum detachment is observed. However, the detachment state is found to be sensitive to the side-wall boundary conditions, the level of neutral pumping, and the target plate tilt. Finally, a broadly similar SOLPS simulation of SPARC is used to assess the appropriateness of the simpler impurity and neutral models used in UEDGE.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

On-line Generation and Error Handling for Surrogate Models within Multifidelity Uncertainty Quantification

Uncertainty quantification is recognized as a fundamental task to obtain predictive numerical simulations. However, many realistic engineering applications require complex and computationally expensive high-fidelity numerical simulations for the accurate characterization of the system responses. Moreover, complex physical models and extreme operative conditions can easily lead to hundreds of uncertain parameters that need to be propagated through high-fidelity codes. Under these circumstances, a single fidelity approach, i.e. a workflow that only uses high-fidelity simulations to perform the uncertainty quantification task, is unfeasible due to the prohibitive overall computational cost. In recent years, multifidelity strategies have been introduced to overcome this issue. The core idea of this family of methods is to combine simulations with varying levels of fidelity/accuracy in order to obtain the multifidelity estimators or surrogates with the same accuracy of their single fidelity counterparts at a much lower computational cost. This goal is usually accomplished by defining a prioria sequence of discretization levels or physical modeling assumptions that can be used to decrease the complexity of a numerical realization and thus its computational cost. However ,less attention has been dedicated to low-fidelity models that can be built directly from the small number of high-fidelity simulations available. In this work we focus our attention on Reduced-Order Models that can be considered a particular class of data-driven approaches. Our main goal is to explore the combination of multifidelity uncertainty quantification and reduced-order models to obtain an efficient framework for propagating uncertainties through expensive numerical codes.

97 MATHEMATICS AND COMPUTING↗

CMSSW Scaling Limits on Many-Core Machines

Today the LHC offline computing relies heavily on CPU resources, despite the interest in compute accelerators, such as GPUs, for the longer term future. The number of cores per CPU socket has continued to increase steadily, reaching the levels of 64 cores (128 threads) with recent AMD EPYC processors, and 128 cores on Ampere Altra Max ARM processors. Over the course of the past decade, the CMS data processing framework, CMSSW, has been transformed from a single-threaded framework into a highly concurrent one. The first multithreaded version was brought into production by the start of the LHC Run 2 in 2015. Since then, the framework's threading efficiency has gradually been improved by adding more levels of concurrency and reducing the amount of serial code paths. The latest addition was support for concurrent Runs. In this work we review the concurrency model of the CMSSW, and measure its scalability with real CMS applications, such as simulation and reconstruction, on mode rn many-core machines. We show metrics such as event processing throughput and application memory usage with and without the contribution of I/O, as I/O has been the major scaling limitation for the CMS applications.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Effects of the magnetic equilibrium on gyrokinetic simulations of tokamak microinstabilities

The general geometry of the experimental tokamak magnetic equilibrium is implemented in the global gyrokinetic simulation code GEM. Compared to the general geometry, the well used Miller parameterization of the magnetic equilibrium is a good approximation in the core region and up to the top of the pedestal. Linear simulations indicate that results with the two geometries agree for r/a ≤ 0.9. However, in the edge region, the instabilities are sensitive to the magnetic equilibrium in both the L-mode and the H-mode plasmas. A small variation of the plasma shaping parameters leads to large changes to the edge instability.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

An Investigation of Parallel Programming Techniques Applied to Monte Carlo Simulations for Post-Flight Reconstruction of Spacecraft Trajectory

Parallelizing software to execute on multi-core central processing units (CPUs) and graphics processing units (GPUs) can be challenging. For some fields outside of Computer Science, this transition comes with new issues. For example, memory limitations can require modifications to code not initially developed to run on GPUs. This work applies the Open Multi-Processing (OpenMP) and Open Accelerators (OpenACC) directive-based parallelization strategies on a Monte Carlo simulation approach for trajectory reconstruction enabling it to run on multi-core CPUs and GPUs. Large matrix operations are the most common use of GPUs, which are not present in this algorithm; however, the natural parallelism of independent trajectories in Monte Carlo simulations is exploited. Benchmarking data are presented comparing execution times of the software for single-thread CPUs, multi-thread CPUs with OpenMP, and multi-thread GPUs using OpenACC. These data were collected using nodes with Intel® Xeon® E5-2670 (Sandy Bridge) CPUs enhanced with NVIDIA® Tesla® K40 GPUs on the Pleiades Supercomputer cluster at the National Aeronautics and Space Administration (NASA) Ames Research Center (ARC) and a local Intel® Xeon Phi™ node at NASA Langley Research Center (LaRC).

Williams, R. Anthony↗