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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 1,621 records · Page 90
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology

PDBx/mmCIF, Protein Data Bank Exchange (PDBx) macromolecular Crystallographic Information Framework (mmCIF), has become the data standard for structural biology. With its early roots in the domain of small-molecule crystallography, PDBx/mmCIF provides an extensible data representation that is used for deposition, archiving, remediation, and public dissemination of experimentally determined three-dimensional (3D) structures of biological macromolecules by the Worldwide Protein Data Bank (wwPDB, wwpdb.org). Extensions of PDBx/mmCIF are similarly used for computed structure models by ModelArchive (modelarchive.org), integrative/hybrid structures by PDB-Dev (pdb-dev.wwpdb.org), small angle scattering data by Small Angle Scattering Biological Data Bank SASBDB (sasbdb.org), and for models computed generated with the AlphaFold 2.0 deep learning software suite (alphafold.ebi.ac.uk). Community-driven development of PDBx/mmCIF spans three decades, involving contributions from researchers, software and methods developers in structural sciences, data repository providers, scientific publishers, and professional societies. Having a semantically rich and extensible data framework for representing a wide range of structural biology experimental and computational results, combined with expertly curated 3D biostructure data sets in public repositories, accelerates the pace of scientific discovery. Herein, we describe the architecture of the PDBx/mmCIF data standard, tools used to maintain representations of the data standard, governance, and processes by which data content standards are extended, plus community tools/software libraries available for processing and checking the integrity of PDBx/mmCIF data. Use cases exemplify how the members of the Worldwide Protein Data Bank have used PDBx/mmCIF as the foundation for its pipeline for delivering Findable, Accessible, Interoperable, and Reusable (FAIR) data to many millions of users worldwide.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

From sequence to protein structure and conformational dynamics with artificial intelligence/machine learning

The 2024 Nobel Prize in Chemistry was awarded in part for de novo protein structure prediction using AlphaFold2, an artificial intelligence/machine learning (AI/ML) model trained on vast amounts of sequence and three-dimensional structure data. AlphaFold2 and related models, including RoseTTAFold and ESMFold, employ specialized neural network architectures driven by attention mechanisms to infer relationships between sequence and structure. At a fundamental level, these AI/ML models operate on the long-standing hypothesis that the structure of a protein is determined by its amino acid sequence. More recently, AlphaFold2 has been adapted for the prediction of multiple protein conformations by subsampling multiple sequence alignments. Herein, we provide an overview of the deterministic relationship between sequence and structure, which was hypothesized over half a century ago with profound implications for the biological sciences ever since. We postulate that protein conformational dynamics are also determined, at least in part, by amino acid sequence and that this relationship may be leveraged for construction of AI/ML models dedicated to predicting protein conformational ensembles. Accordingly, we describe a conceptual model architecture, which may be trained on sequence data in combination with conformationally sensitive structural information, coming primarily from nuclear magnetic resonance (NMR) spectroscopy. Notwithstanding certain limitations in this context, NMR offers abundant structural heterogeneity conducive to conformational ensemble prediction. As NMR and other data continue to accumulate, sequence-informed prediction of protein structural dynamics with AI/ML has the potential to emerge as a transformative capability across the biological sciences.

Artificial intelligence↗
DOE OSTI2025

Accuracy-Based Annotation Quality Score (ABAQS) v1.0

Assessing genome annotation quality is crucial for downstream analyses, but current methods are inadequate for eukaryotes. We present Accuracy-Based Annotation Quality Score (ABAQS), a novel, minimal-data-driven method that comprehensively assesses annotation quality. ABAQS evaluates multiple factors, including genome completeness, gene model validity, and protein profile accuracy, outperforming other metrics like BUSCO and PSAURON. We applied ABAQS to over 2500 eukaryotic genomes and showed its robustness and effectiveness in evaluating genome annotation quality, making it a valuable tool for researchers working with genomic data. ABAQS reveals significant variation in annotation quality and highlights the importance of filtering in improving annotation quality and accuracy.

Haridas, Sajeet [Lawrence Berkeley National Labora↗
DOE OSTI2021

Novel Data Driven Noise Emulation Framework using Deep Neural Network for Generating Synthetic PMU Measurements

Sensors play a critical role in supporting day-to-day grid operations and they are essential to operator’s decision-making process. Furthermore, sensors and sensor behaviors need to be emulated with grid simulations to perform modeling studies and to design cutting edge power systems applications. Ensuring the accurate behavior of these applications requires accurate emulation of sensors and pertinent signals. However, most grid simulators and modeling tools assume either zero error scenarios or simplistic noise models that may not always correlate to real-world sensors. To address the above issue, this work presents an initial study on the noise characteristics of phasor measurement units (PMUs), along with models for recreating their unique noise signatures. The proposed methods (both analytical and machine-learning-based) provide a substantial increase in a sensor’s model fidelity, a feature that can be leveraged by an end-user application to yield more accurate system representations. The proposed methods were then applied to micro PMU data from the EPFL microgrid campus to extract sensor noise profiles. This data was used to train a deep learning model, which was tested to emulate the noise characteristics present in actual signals. Based on the observed results and the employed data-driven methodology, the proposed methods may be adapted to replicate the behavior of other grid sensors and power new applications capable of detecting sensor degradation and eventual device failures in near real-time.

PMU, noise emulation, synthetic measurements, deep↗
DOE OSTI2024

Characterizing the combined impact of nucleation-driven precipitation and secondary passivation on carbon mineralization

The evolution of mineral reactive surface area is one of the primary phenomena controlling the progression and extent of mineral carbonation. The CO 2 mineralization begins with nucleation of crystals that provide initial surface area for subsequent growth of the mineral. However, many reactive transport models (RTMs) for CO 2 mineralization do not include the nucleation process. The few RTMs that do include it are yet to be validated against experimental data. Similarly, many RTMs ignore passivating effects of the secondary mineral, which coats the surface of the dissolving mineral, slow down the reaction process, and reduce the total extent of carbonation. Furthermore, the combined impact of nucleation and passivation on carbon mineralization is yet to be properly characterized. In this study, we consider the coupled effects of passivation and nucleation on the mineralization extent. The nucleation-driven precipitation model relies on the formation of nuclei to provide a surface area for crystal growth, while a new model is proposed to account for passivation effects. Our analysis shows that (i) omission of nucleation leads to overestimation of extent of mineralization, and (ii) omission of passivation leads to overestimation of host rock reactivity. The model was evaluated via comparison with CO 2 mineralization data from the literature and models that ignore these processes. We observed that including nucleation and passivation lead to closer predictions of the CO 2 mineralization extent. Therefore, this study highlights the importance of including the coupled nucleation-driven precipitation and secondary passivation in RTMs. Here, the findings from the study can be applied in various scientific and engineering applications such as petroleum production, cement carbonation, CO 2 sequestration, chemical weathering, and concrete degradation.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2024

Quantifying the Role of EMIC Wave Scattering During the 27 February 2014 Storm by RAM–SCB Simulations

Electromagnetic Ion Cyclotron (EMIC) wave scattering has been proved to be responsible for the fast loss of both radiation belt (RB) electrons and ring current (RC) protons. However, its role in the concurrent dropout of these two co–located populations remains to be quantified. In this work, we study the effect of EMIC wave scattering on both populations during the 27 February 2014 storm by employing the global physics–based RAM–SCB model. Throughout this storm event, MeV RB electrons and 100s keV RC protons experienced simultaneous dropout following the occurrence of intense EMIC waves. By implementing data–driven initial and boundary conditions, we perform simulations for both populations through the interplay with EMIC waves and compare them against Van Allen Probes observations. Notably, the results indicate that by including EMIC wave scattering loss, especially by the He–band EMIC waves, the model aligns closely with data for both populations. Additionally, we investigate the simulated pitch angle distributions (PADs) for both populations. Including EMIC wave scattering in our model predicts a 90° peaked PAD for electrons with stronger losses at lower pitch angles, while protons exhibit an isotropic PAD with enhanced losses at pitch angles above 40°. Furthermore, our model predicts considerable precipitation of both particle populations, predominantly confined to the afternoon to midnight sector (12 hr < MLT < 24 hr) during the storm's main phase, corresponding closely with the presence of EMIC waves.

79 ASTRONOMY AND ASTROPHYSICS↗
NASA NTRS1997

Comparison of the Seasonal Change in Cloud-Radiative Forcing from Atmospheric General Circulation Models and Satellite Observations

We compare seasonal changes in cloud-radiative forcing (CRF) at the top of the atmosphere from 18 atmospheric general circulation models, and observations from the Earth Radiation Budget Experiment (ERBE). To enhance the CRF signal and suppress interannual variability, we consider only zonal mean quantities for which the extreme months (January and July), as well as the northern and southern hemispheres, have been differenced. Since seasonal variations of the shortwave component of CRF are caused by seasonal changes in both cloudiness and solar irradiance, the latter was removed. In the ERBE data, seasonal changes in CRF are driven primarily by changes in cloud amount. The same conclusion applies to the models. The shortwave component of seasonal CRF is a measure of changes in cloud amount at all altitudes, while the longwave component is more a measure of upper level clouds. Thus important insights into seasonal cloud amount variations of the models have been obtained by comparing both components, as generated by the models, with the satellite data. For example, in 10 of the 18 models the seasonal oscillations of zonal cloud patterns extend too far poleward by one latitudinal grid.

Cess, R. D.↗
DOE OSTI2025

Unveiling X-ray absorption signatures of boron nitride via first-principles simulation and machine learning

Boron nitride (BN) allotropes hold great promise in many advanced applications ranging from optical and photonic devices to energy storage and battery systems to tribological components. The diverse functionalities of this material stem from BN’s highly tunable structural and electronic properties, which are governed by the versatile boron–nitrogen bonding configurations. Exploring the structural landscape of BN can unveil novel structures possessing unique properties suited for specific applications, therefore accelerating the design of next-generation advanced functional materials. In this work, we leverage boron K-edge X-ray absorption spectroscopy (XAS) as an effective probe for local structural features and chemical environments. A total of 210 BN crystal structures are generated via analogies to the extensive array of carbon allotropes, and XAS is simulated for each unique local motif within the resulting collection of structures. A mapping between structural features and spectral signatures was established by synergizing first-principle simulations with data-driven based post-analysis approaches. Specifically, we developed a neural network model that can satisfactorily predict spectra line shapes from local structural descriptors. Toward automatic spectroscopic interpretation of any new BN structures, supervised machine learning models, trained on this structure–spectrum dataset, can accurately infer local coordination environments from simulated XAS, highlighting the strength of this unique approach of combining high-fidelity first-principles simulation and machine-learning to accelerate target design of novel BN materials via rational understanding of local structure-spectrum correlations.

36 MATERIALS SCIENCE↗
DOE OSTI2021

Statistically-informed deep learning for gravitational wave parameter estimation

We introduce deep learning models to estimate the masses of the binary components of black hole mergers, $(m_1,m_2)$, and three astrophysical properties of the post-merger compact remnant, namely, the final spin, $a_\mathrm f$, and the frequency and damping time of the ringdown oscillations of the fundamental $\ell = m = 2$ bar mode, $(\omega_\mathrm R, \omega_\mathrm I)$. Our neural networks combine a modified WaveNet architecture with contrastive learning and normalizing flow. We validate these models against a Gaussian conjugate prior family whose posterior distribution is described by a closed analytical expression. Upon confirming that our models produce statistically consistent results, we used them to estimate the astrophysical parameters $(m_1,m_2, a_\mathrm f, \omega_\mathrm R, \omega_\mathrm I)$ of five binary black holes: GW150914, GW170104, GW170814, GW190521 and GW190630. We use PyCBC Inference to directly compare traditional Bayesian methodologies for parameter estimation with our deep learning based posterior distributions. Our results show that our neural network models predict posterior distributions that encode physical correlations, and that our data-driven median results and 90% confidence intervals are similar to those produced with gravitational wave Bayesian analyses. This methodology requires a single V100 NVIDIA GPU to produce median values and posterior distributions within two milliseconds for each event. Furthermore, this neural network, and a tutorial for its use, are available at the Data and Learning Hub for Science.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

The simulated catalogue of optical transients and correlated hosts (SCOTCH)

ABSTRACT As we observe a rapidly growing number of astrophysical transients, we learn more about the diverse host galaxy environments in which they occur. Host galaxy information can be used to purify samples of cosmological Type Ia supernovae, uncover the progenitor systems of individual classes, and facilitate low-latency follow-up of rare and peculiar explosions. In this work, we develop a novel data-driven methodology to simulate the time-domain sky that includes detailed modelling of the probability density function for multiple transient classes conditioned on host galaxy magnitudes, colours, star formation rates, and masses. We have designed these simulations to optimize photometric classification and analysis in upcoming large synoptic surveys. We integrate host galaxy information into the snana simulation framework to construct the simulated catalogue of optical transients and correlated hosts (SCOTCH, a publicly available catalogue of 5-million idealized transient light curves in LSST passbands and their host galaxy properties over the redshift range 0 < z < 3. This catalogue includes supernovae, tidal disruption events, kilonovae, and active galactic nuclei. Each light curve consists of true top-of-the-galaxy magnitudes sampled with high (≲2 d) cadence. In conjunction with SCOTCH, we also release an associated set of tutorials and transient-specific libraries to enable simulations of arbitrary space- and ground-based surveys. Our methodology is being used to test critical science infrastructure in advance of surveys by the Vera C. Rubin Observatory and the Nancy G. Roman Space Telescope.

Astronomy & Astrophysics↗
DOE OSTI2023

Predictive Engineering of Interfaces and Cathodes for High-Performance All Solid-State Lithium-Sulfur Batteries

The primary goal of this project is to leverage data-driven methods and machine learning strategies to develop accurate multi-physics models for all-solid-state Li-S battery (ASLSB) materials that can capture electrochemical and transport phenomena over atomic to mesoscopic length/timescales. These models will be rigorously validated by synthesis and advanced characterization experiments. The team will leverage the predictive power of these models, alongside synthesis/characterization experiments and battery fabrication to address longstanding issues at the electrode/electrolyte interfaces in ASLSBs. The project’s proposed technology involves the following: (1) halide-doped solid sulfide electrolytes that can concurrently provide high Li + ion conductivity and suppress dendrite growth; (2) novel mesoporous cathode composed of super-P and carbon nanotubes co-infiltrated with sulfur and sulfide electrolyte, which hold potential to allow high sulfur loading and optimal ion/electron pathways; and (3) functionalization of sulfide electrolyte with ionic liquids to improve physical contact and minimize impedance at the cathode/electrolyte interface. Successful development of proposed predictive models (at multiple scales) will bridge this knowledge gap and will advance fundamental understanding of reaction chemistry, kinetics, charge transfer, and dendrite growth at electrified SSIs. This will enable predictive design of effective strategies to mitigate interfacial problems in ASSLSBs, including poor interfacial contact, interfacial impedance to Li + ion transport, and poor electron/ion conduction within cathodes. Ultimately, the fundamental knowledge gained will lead to development of high-performance ASSLSBs.

25 ENERGY STORAGE↗
DOE OSTI2024

AEOLUS: Advances in Experimental Design, Optimal Control, and Learning for Uncertain Complex Systems

The AEOLUS Center is dedicated to developing a unified optimization-under-uncertainty framework for (1) learning predictive models from data and (2) optimizing experiments, processes, and designs governed by these models, all driven by complex, uncertain energy systems. AEOLUS addressed the critical need for principled, rigorous, scalable, and structure-exploiting capabilities for exploring parameter and decision spaces of complex forward simulation models---the so-called outer loop. This report summarizes the work done under DE-SC0021077 on (1) nonlocal models for solidification problems, (2) a multifidelity method for a nonlocal diffusion model, and (3) multifidelity Monte Carlo methods.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2024

Advances in Experimental Design, Optimal Control, and Learning for Uncertain Complex Systems (Final Report for AEOLUS)

The AEOLUS Center is dedicated to developing a unified optimization-under-uncertainty framework for: (1) learning predictive models from data; and (2) optimizing experiments, processes, and designs governed by these models, all driven by complex, uncertain energy systems. AEOLUS addresses the critical need for principled, rigorous, scalable, and structure-exploiting capabilities for exploring parameter and decision spaces of complex forward simulation models. This report summarizes the key highlights of our research during the period of performance.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2025

MuSIKAL: Multiphysics Simulations and Knowledge Discovery through AI/ML Technologies

Under the MuSiKAL project, we developed a framework for a coastal digital twin (DT) platform capable of integrating diverse data resources, configuring multiscale model simulations, performing SciML‐accelerated predictions, with applications primarily driven by storm surge and heavily rainfall events impacting the Gulf Coast of the U.S.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS2000

Microwave Driven Actuators Power Allocation and Distribution

Design, fabrication and test of a power allocation and distribution (PAD) network for microwave driven actuators is presented in this paper. Development of a circuit that would collect power from a rectenna array amplify and distribute the power to actuators was designed and fabricated for space application in an actuator array driven by a microwave. A P-SPICE model was constructed initially for data reduction purposes, and was followed by a working real-world model. A voltage up - converter (VUC) is used to amplify the voltage from the individual rectenna. The testing yielded a 26:1 voltage amplification ratio with input voltage at 9 volts and a measured output voltage 230VDC. Future work includes the miniaturization of the circuitry, the use of microwave remote control, and voltage amplification technology for each voltage source. The objective of this work is to develop a model system that will collect DC voltage from an array of rectenna and propagate the voltage to an array of actuators.

Forbes, Timothy↗
NASA NTRS2004

Comparisons of Observations with Results from 3D Simulations and Implications for Predictions of Ozone Recovery

Although chemistry and transport models (CTMs) include the same basic elements (photo- chemical mechanism and solver, photolysis scheme, meteorological fields, numerical transport scheme), they produce different results for the future recovery of stratospheric ozone as chlorofluorcarbons decrease. Three simulations will be contrasted: the Global Modeling Initiative (GMI) CTM driven by a single year\'s winds from a general circulation model; the GMI CTM driven by a single year\'s winds from a data assimilation system; the NASA GSFC CTM driven by a winds from a multi-year GCM simulation. CTM results for ozone and other constituents will be compared with each other and with observations from ground-based and satellite platforms to address the following: Does the simulated ozone tendency and its latitude, altitude and seasonal dependence match that derived from observations? Does the balance from analysis of observations? Does the balance among photochemical processes match that expected from observations? Can the differences in prediction for ozone recovery be anticipated from these comparisons?

Douglass, Anne R.↗
DOE OSTI2020

A Physics-Driven Deep-Learning Network for Solving Nonlinear Inverse Problems

Geosteering inversion, which can be viewed as a nonlinear inverse problem, is an important technique used by directional drilling. Traditional methods that rely on iterative procedures and regularization are sensitive to the selection of initial values and can be slow due to convergence issues. In industrial applications, a lookup table is used to produce fast predictions. However, performance is not guaranteed by this approach due to the limitation of the hardware. In this paper, we propose a novel physics-driven deep-learning framework for providing a fast, accurate surrogate to solve the inverse problem. Particularly, leveraged by the forward physical model and 1D convolutional neural network (1D-CNN), the proposed method provides more reliable solutions to the inverse problem with improved performance. In addition, a new physics-driven loss function is introduced to accommodate both the model misfit and the data misfit. In conclusion, our experiments demonstrate the effectiveness of our method.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗