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At least 1,621 records · Page 90

ncompare: A Python Package for Comparing netCDF Structures

Earth science researchers and data engineers have a common problem: they often need to compare data files to see what is different between them. A lot of time is spent developing code to test differences. When it comes to comparing multidimensional data file formats like netCDFs (Network Common Data Form), this is particularly challenging and time-consuming, since there is frequently a need to evaluate the differences between dimension sizes, variable structures, and variable attributes, especially for regression testing. Since netCDFs are widely used in Earth science — with climate models, oceanographic or atmospheric reanalyses, and observational data — improved means of evaluating netCDF files can help enable a wide range of applications. We have developed a reusable open source approach through `ncompare`, which is a Python package for comparing netCDF structures [[https://github.com/nasa/ncompare]]. The `ncompare` tool compares the structure of two Network Common Data Form (NetCDF) files at the command line. It facilitates rapid comparisons by generating a formatted display of the matching and non-matching groups, variables, and associated metadata between two NetCDF datasets. The user has the option to colorize the terminal output for ease of viewing, and `ncompare` can optionally save comparison reports in text, comma-separated value (CSV), and/or Microsoft Excel formats. Despite the availability of tools (such as ncmpidiff or nccmp) that compare the values of variables, there was not previously a readily available, Python-based tool for rapid visual comparisons of group and variable structures, attributes, and chunking. `ncompare` was developed at NASA’s Atmospheric Science Data Center (ASDC) and is a collaboration with NASA Openscapes [[https://nasa-openscapes.github.io]] mentors across 11 of NASA’s data centers. Openscapes’ overarching vision is to support scientific researchers using NASA Earthdata as they migrate their workflows to the cloud. Relevant links: - https://github.com/nasa/ncompare - https://github.com/pyOpenSci/software-submission/issues/146 - https://nasa-openscapes.github.io

Daniel Kaufman↗

Anticipating Hazard Impacts through Capacity Building and Co-development

Improving forecast accuracy, extending lead time, understanding hazard susceptibility, and integrating exposure and vulnerability data to generate impact-based forecasts are critical in mitigating disaster impacts. These efforts enable anticipatory action through enhancing the efficacy of early warning systems to assess potential multi-dimensional hazard impacts. In response to this need, SERVIR has co-developed a series of hazard services providing vital information from national to regional scales. This poster showcases examples of geospatial services co-developed with partners through a capacity building approach, supporting the establishment of hazard early warning / early action systems. These services integrate multidimensional vulnerability and exposure data to comprehensively assess impacts. Furthermore, these services demonstrate how co-development and capacity building can advance the development of impact-based forecasts and multi-hazards services. By prioritizing collaboration, human insights, local knowledge, capacity building, and employing applied science approaches in geospatial service development, this work has helped create inclusive and customized solutions. These solutions are tailored to meet the needs of local communities and are readily adaptable into decision-making processes.

weather↗

Swift Mission Gyro Patch and Re-Calibration Without A Calibration Campaign

The Swift spacecraft has three Two-Axis-Rate-Assemblies (TARAs) (designated as TARA 1, TARA 2, and TARA 3, and generically referred to as gyros) which until March of 2024 were all used in rate estimation as an operational workaround (dubbed “corrector-gyro”) of a software defect discovered in 2007. TARA 1 performance degraded throughout 2023 and 2024, making it an unreliable rate source. It was determined that shifting TARA 1 to be the corrector-gyro and using mainly TARAs 2 and 3, with the existing flight software (FSW) defect, would not meet performance requirements for science operations. Rather the FSW was patched to remove the defect found in 2007. This patch was delivered by the vendor in 2009, but was not fully tested or installed at that time. A decision was made in 2024 to install the patch despite limited simulation and testing capabilities. The problem facing the team was to come up with a set of alignment parameters that would work with the new patch, using data from the spacecraft operating normally in the old configuration. Calibration activities would have been possible in either the old or new FSW configuration, but were ultimately deemed unnecessary, saving staff time and pre-serving time on the spacecraft for science data collection. This paper describes the old and new FSW configurations related to gyro processing and alignment, and how the raw gyro and star tracker data from normal operation were used with a multidimensional unconstrained nonlinear minimization in MATLAB (Nelder-Mead1) to produce a fully calibrated set of gyro alignment parameters compatible with the patched FSW. Flight data is presented showing that not only did the process work, it improved performance significantly, rivaling the best slew performance of the mission to date.

MATLAB↗

Mathematical Model of a Regenerative Fuel Cell for System Optimization

This thesis developed a system-level optimization model of a regenerative fuel cell (RFC) system for long-duration, off-world energy storage applications. Prior RFC design studies have typically been limited to reduced parameter sets and simplified constraints due to computational limitations relative to the number of relevant degrees of freedom. As a result, important nonlinear interactions between subsystems have not been fully captured. This work began to address that gap by developing a higher-fidelity, nonlinear optimization framework that incorporates a broader set of design variables and coupled constraints, enabling a multidimensional model that captures the coupled behavior of RFC subsystems and demonstrates the feasibility of applying optimization to such systems. An expanded system-level optimization approach was established that captures interactions between electrochemical performance, structural requirements, and storage design. This enabled a more comprehensive evaluation of trade-offs than conventional formulations. The model integrates four coupled subsystems: a fuel cell, an electrolyzer, reactant gas, and high-pressure storage tanks, and was formulated to accommodate a wide range of mission parameters, including operational time and required output power. It incorporates constraints on available solar array power, reactant mass balance between production and consumption, and pressure-dependent storage requirements. To enable reliable convergence, the optimization problem was reformulated to reduce dimensionality and improve numerical stability, with subsystem models organized for efficient evaluation. Problem dimensionality was reduced by consolidating lower-level design variables into higher-level representative quantities, and subsystem behavior was evaluated within the optimization loop. A multi-start initialization strategy was employed to mitigate sensitivity to local minima and improve solution quality, while nonlinear relationships were solved using robust numerical methods. The results showed that convergence was achieved across a range of required output power values. Specific energy reached a maximum at a critical mission power level, where the electrolyzer power matched the available solar input and operated near its voltage and current density limits. Beyond this point, further increases in required power resulted in less mass-efficient operation, increasing total system mass and reducing overall performance. The developed model represents an advancement in RFC system-level optimization by enabling analysis of a broader and more tightly coupled design space than previous considerations. While convergence behavior and computational cost remain challenges, the methods introduced improve solvability and allow inclusion of additional design variables with minimal loss of physical fidelity. However, the numerical results should not be interpreted as definitive design recommendations, as the model includes simplifying assumptions and omits several higher-order effects. Future work should extend this framework by incorporating additional subsystems and loss mechanisms, such as thermal management, parasitic power consumption, and reactant losses, to improve fidelity and ensure more representative design conclusions.

Electrochemistry↗

Quantification and Visualization of Variation in Anatomical Trees

This paper presents two approaches to quantifying and visualizing variation in datasets of trees. The first approach localizes subtrees in which significant population differences are found through hypothesis testing and sparse classifiers on subtree features. The second approach visualizes the global metric structure of datasets through low-distortion embedding into hyperbolic planes in the style of multidimensional scaling. A case study is made on a dataset of airway trees in relation to Chronic Obstructive Pulmonary Disease.

dataset, tree, quantification, visualization↗

Fully implicit Particle-in-cell algorithms for multiscale plasma simulation

The outline of the paper is as follows: Particle-in-cell (PIC) methods for fully ionized collisionless plasmas, explicit vs. implicit PIC, 1D ES implicit PIC (charge and energy conservation, moment-based acceleration), and generalization to Multi-D EM PIC: Vlasov-Darwin model (review and motivation for Darwin model, conservation properties (energy, charge, and canonical momenta), and numerical benchmarks). The author demonstrates a fully implicit, fully nonlinear, multidimensional PIC formulation that features exact local charge conservation (via a novel particle mover strategy), exact global energy conservation (no particle self-heating or self-cooling), adaptive particle orbit integrator to control errors in momentum conservation, and canonical momenta (EM-PIC only, reduced dimensionality). The approach is free of numerical instabilities: ω pe Δt >> 1, and Δx >> λ D . It requires many fewer dofs (vs. explicit PIC) for comparable accuracy in challenging problems. Significant CPU gains (vs explicit PIC) have been demonstrated. The method has much potential for efficiency gains vs. explicit in long-time-scale applications. Moment-based acceleration is effective in minimizing N FE , leading to an optimal algorithm.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

GazeAppraise v. 0.1

GazeAppraise advances the state of the art of gaze pattern analysis using methods that simultaneously analyze spatial and temporal characteristics of gaze patterns. GazeAppraise enables novel research in visual perception and cognition; for example, using shape features as distinguishing elements to assess individual differences in visual search strategy. Given a set of point-to-point gaze sequences, hereafter referred to as scanpaths, the method constructs multiple descriptive features for each scanpath. Once the scanpath features have been calculated, they are used to form a multidimensional vector representing each scanpath and cluster analysis is performed on the set of vectors from all scanpaths. An additional benefit of this method is the identification of causal or correlated characteristics of the stimuli, subjects, and visual task through statistical analysis of descriptive metadata distributions within and across clusters.

Wilson, Andrew↗

Pole Figure Explorer v. 1.8

This software is employed for 3D visualization of X-ray diffraction (XRD) data with functionality for slicing, reorienting, isolating and plotting of 2D color contour maps and 3D renderings of large datasets. The program makes use of the multidimensionality of textured XRD data where diffracted intensity is not constant over a given set of angular positions (as dictated by the three defined dimensional angles of phi, chi, and two-theta). Datasets are rendered in 3D with intensity as a scaler which is represented as a rainbow color scale. A GUI interface and scrolling tools along with interactive function via the mouse allow for fast manipulation of these large datasets so as to perform detailed analysis of diffraction results with full dimensionality of the diffraction space.

Van Benthem, Mark H.↗

Leveraging Interaction History for Intelligent Configuration of Multiple Coordinated Views in Visualization Tools

Visualization tools can take advantage of multiple coordinated views to support analysis of large, multidimensional data sets. Effective design of such views and layouts can be challenging, but understanding users analysis strategies can inform design improvements. We outline an approach for intelligent design configuration of visualization tools with multiple coordinated views, and we discuss a proposed software framework to support the approach. The proposed software framework could capture and learn from user interaction data to automate new compositions of views and widgets. Such a framework could reduce the time needed for meta analysis of the visualization use and lead to more effective visualization design.

infovis↗

Modelling of LOCA Tests with the BISON Fuel Performance Code

BISON is a modern finite-element based, multidimensional nuclear fuel performance code that is under development at Idaho National Laboratory (USA). Recent advances of BISON include the extension of the code to the analysis of LWR fuel rod behaviour during loss-of-coolant accidents (LOCAs). In this work, BISON models for the phenomena relevant to LWR cladding behaviour during LOCAs are described, followed by presentation of code results for the simulation of LOCA tests. Analysed experiments include separate effects tests of cladding ballooning and burst, as well as the Halden IFA-650.2 fuel rod test. Two-dimensional modelling of the experiments is performed, and calculations are compared to available experimental data. Comparisons include cladding burst pressure and temperature in separate effects tests, as well as the evolution of fuel rod inner pressure during ballooning and time to cladding burst. Furthermore, BISON three-dimensional simulations of separate effects tests are performed, which demonstrate the capability to reproduce the effect of azimuthal temperature variations in the cladding. The work has been carried out in the frame of the collaboration between Idaho National Laboratory and Halden Reactor Project, and the IAEA Coordinated Research Project FUMAC.

BISON code↗

Bellerophon Environment for Analysis of Materials (BEAM)

Improvements in scientific instrumentation allow imaging at mesoscopic to atomic length scales, many spectroscopic modes, and now--with the rise of multimodal acquisition systems and the associated processing capability--the era of multidimensional, informationally dense data sets has arrived. Technical issues in these combinatorial scientific fields are exacerbated by computational challenges best summarized as a necessity for drastic improvement in the capability to transfer, store, and analyze large volumes of data. The Bellerophon Environment for Analysis of Materials (BEAM) platform provides material scientists the capability to directly leverage the integrated computational and analytical power of High Performance Computing (HPC) to perform scalable data analysis and simulation and manage uploaded data files via an intuitive, cross-platform client user interface. This framework delivers authenticated, "push-button" execution of complex user workflows that deploy data analysis algorithms and computational simulations utilizing compute-and-data cloud infrastructures and HPC environments like Titan at the Oak Ridge Leadershp Computing Facility (OLCF).

Lingerfelt, Eric J↗

General Mode Scanning Probe Microscopy

A critical part of SPM measurements is the information transfer from the probe-sample junction to the measurement system. Current information transfer methods heavily compress the information-rich data stream by averaging the data over a time interval, or via heterodyne detection approaches such as lock-in amplifiers and phase-locked loops. As a consequence, highly valuable information at the sub-microsecond time scales or information from frequencies outside the measurement band is lost. We have developed a fundamentally new approach called General Mode (G-mode), where we can capture the complete information stream from the detectors in the microscope. The availability of the complete information allows the microscope operator to analyze the data via information-theory analysis or comprehensive physical models. Furthermore, the complete data stream enables advanced data-driven filtering algorithms, multi-resolution imaging, ultrafast spectroscropic imaging, spatial mapping of multidimensional variability in material properties, etc. Though we applied this approach to scanning probe microscopy, the general philosophy of G-mode can be applied to many other modes of microscopy. G-mode data is captured by completely custom software written in LabVIEW and Matlab. The software generates the waveforms to electrically, thermally, or mechanically excite the SPM probe. It handles real-time communications with the microscope software for operations such as moving the SPM probe position and also controls other instrumentation hardware. The software also controls multiple variants of high-speed data acquisition cards to excite the SPM probe with the excitation waveform and simultaneously measure multiple channels of information from the microscope detectors at sampling rates of 1-100 MHz. The software also saves the raw data to the computer and allows the microscope operator to visualize processed or filtered data during the experiment. The software performs all these features while offering a user-friendly interface.

Somnath, Suhas↗

EMPulse, a new 3-D simulation code for EMP formation and propagation

EMPulse is a comprehensive and modern 3-D simulation code for electro-magnetic pulse (EMP) formation and propagation studies, being developed at LLNL under a Laboratory Directed R&D (LDRD) initiative that was launched in the fall of 2014. Furthermore, EMPulse builds upon the open-source Warp particle-in-cell code framework which was developed by members of this team and collaborators at other institutions. Our goal of this endeavor is a new tool, using methods different from those in common use, and enabling the detailed and self-consistent study of multidimensional effects in geometries that have typically been treated only approximately. We describe the underlying Warp framework and its capabilities; the models that have been or are being newly developed and incorporated into EMPulse, tests of these models, and number of approaches to increased computational efficiency that we are studying.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Parallel file system with metadata distributed across partitioned key-value store c

Improved techniques are provided for storing metadata associated with a plurality of sub-files associated with a single shared file in a parallel file system. The shared file is generated by a plurality of applications executing on a plurality of compute nodes. A compute node implements a Parallel Log Structured File System (PLFS) library to store at least one portion of the shared file generated by an application executing on the compute node and metadata for the at least one portion of the shared file on one or more object storage servers. The compute node is also configured to implement a partitioned data store for storing a partition of the metadata for the shared file, wherein the partitioned data store communicates with partitioned data stores on other compute nodes using a message passing interface. The partitioned data store can be implemented, for example, using Multidimensional Data Hashing Indexing Middleware (MDHIM).

97 MATHEMATICS AND COMPUTING↗

Rapid and label-free procedure for microbial community screening and profiling

Methods are described herein and termed Microbial Community Screening and Profiling (MCSP) for multi-dimensional analysis and non-destructive and label-free detection and analysis, which allow for complementary analytical techniques to be performed on the same sample for such multidimensional analysis.

Birarda, Giovanni↗

Systems and methods of generating color saturated data marks in data visualizations

A method of displaying data visualizations includes retrieving a dataset from a multidimensional database, where the dataset includes a plurality of fields, including first and second fields, and the first field is a data hierarchy that includes multiple subfields. The method further includes displaying a GUI with a first region displaying the plurality of fields (with the first field in a collapsed state), a second region with a plurality of shelves, and a third region. In response to receiving a user action to display the first field in an expanded state, the method displays the first field and the multiple subfields in a hierarchical structure. The method receives additional user actions to: (i) associate a first subfield of the plurality with a first shelf, and (ii) associate the second field with a second shelf, and then displays, in accordance with the user actions, a data visualization in the third region.

Stolte, Chris↗

Global analysis peak fitting for chemical spectroscopy data

The present invention relates to methods for analyzing a chemical sample. For instance, the methods herein allow for global analysis of spectroscopy data in order to extract useful chemical properties from complicated multidimensional data. Such analysis can optionally employ data compression to further expedite computer-implemented computation. In particular, the methods herein provide global analysis of data matrices explained by both linear and non-linear terms.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Effective Field Theory Analysis and Active Neutron Veto Design for the Cryogenic Dark Matter Search

Astrophysical measurements and cosmological predictions suggest the exists of a large amount of matter in the universe that does not interact via electromagnetic forces. This non-luminescent matter, known dark matter, exists in halos that encompass and are within galaxies, including the Milky Way. Therefore, dark matter particles should should be directly detectable by experiments on Earth, such as the Super Cryogenic Dark Matter Search (SuperCDMS). Dark matter is assumed to be low mass (< 100 GeV/c2) and interact via the weak force using either a spin-independent or spin-dependent coupling. However, making incorrect assumptions about dark matter interactions can lead to misleading results. Because interactions with dark matter particles are rare, direct detection experiments must be able to shield for or reject backgrounds to very low levels. Low energy neutron backgrounds that make it to the detectors are especially dangerous, because they cannot be easily distinguished from the expected dark matter signal. Scintillator doped with a high neutron-capture cross-section material can be used to detect neutrons via their resulting gamma rays. Examples of such detectors using liquid scintillator have been successfully used in past high-energy physics (HEP) experiments. However, a liquid scintillator can leak and is not as amenable to modular or complex shapes as a solid scintillator. The light outputs and efficiencies of gadolinium-loaded polystyrene-based scintillators have been explored using a wide variety of gadolinium compounds with varying concentrations. Collection strategies using a wavelength shift- ing (WLS) fiber and silicon photomultipliers (SiPMs) were also evaluated as a possible neutron veto for an upgrade to SuperCDMS SNOLAB. The scattering of dark matter particles off nuclei in direct detection experiments can be described in terms of a multidimensional effective field theory (EFT). A new systematic analysis technique is developed using the EFT approach and Bayesian inference methods to exploit, when possible, the energy-dependent information of the detected events, experimental efficiencies, and backgrounds. Highly dimensional likelihoods are calculated over the mass of the weakly interacting massive particle (WIMP) and multiple EFT coupling coefficients, which can then be used to set limits on these parameters and choose models (EFT operators) that best fit the direct detection data. Expanding the parameter space beyond the standard spin-independent isoscalar cross section and WIMP mass reduces tensions between previously published experiments. Combining these experiments to form a single joint likelihood leads to stronger limits than when each experiment is considered on its own. Simulations using two nonstandard operators (O3 and O8) are used to test the proposed analysis technique in up to five dimensions and demonstrate the importance of using multiple likelihood projections when determining constraints on WIMP mass and EFT coupling coefficients. In particular, this shows that an explicit momentum dependence in dark matter scattering can be identified. CDMSlite Run 2 was a search for Weakly Interacting Massive Particles (WIMPs) with a cryogenic 600 g Germanium detector operated deep underground. It was operated in a mode optimizing sensitivity to WIMPs of relatively low mass, 2 - 20 GeV, while sacrificing background rejection. An EFT analysis of CDMSlite Run 2 data from SuperCDMS Soudan is presented here. A binned likelihood Bayesian analysis was performed on the data, optimizing over the parameters of EFT interactions and the recoil energy spectra due to the dominant Compton scattering and tritium backgrounds. Recoil energy regions within 5σ of known activation peaks were removed from the analysis. The Bayesian evidences of the resulting likelihoods show that CDMSlite Run 2 data is entirely consistent with the background models with no EFT interaction necessary. Upper limits on the WIMP mass and coupling coefficients amplitudes and phases are presented for each EFT operator.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗