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At least 163 records · Page 9

X-Ray Fluorescence Microscopy: A Method of Measuring Ion Concentrations in the Ear

This technical note describes synchrotron x-ray fluorescence microscopy (XFM) as a method for measuring the concentrations of various elements in cross-sections of the ear at extremely high resolution. This method could be of great importance for addressing many open questions in hearing research. XFM uses synchrotron radiation to evoke emissions from many biologically relevant elements in the tissue. The intensity and wavelength of the emitted radiation provide a fingerprint of the tissue composition that can be used to measure the concentration of the elements in the sampled location. Here, we focus on energies that target biologically-relevant elements of the periodic table between magnesium and zinc. Since a highly focused x-ray beam is used, the spot size is well below 1 mu m and the samples can be scanned at a nanometer lateral resolution. This study shows that measurement of the concentrations of different elements is possible in a mid-modiolar cross-section of a mouse cochlea. Images are presented that indicate potassium and chloride "hot spots" in the spiral ligament and the spiral limbus, providing experimental evidence for the potassium recycling pathway and showing the cochlear structures involved. Scans of a section obtained from the incus, one of the middle ear ossicles, in a developing mouse have shown that zinc is not uniformly distributed This supports the hypothesis that zinc plays a special role in the process of ossification. Although limited by sophisticated sample preparation and sectioning, the method provides ample exciting opportunities, to understand the role of genetics and epigenetics on hearing mechanisms in ontogeny and phylogeny.

59 BASIC BIOLOGICAL SCIENCES↗

Controlled 3D nanoparticle deposition by drying of colloidal suspension in designed thin micro-porous architectures

Nanoparticle deposition by drying of colloidal suspension in thin micro-porous architectures has attracted a lot of attention in scientific research as well as industrial applications. However, the underlying mechanisms of such three-dimensional (3D) deposition are not yet fully revealed due to the complexity of the co-occurring processes of two-phase fluid flows, phase change and mass transport. Consequently, the control of 3D nanoparticle deposition remains a challenge. We use a combined experimental and numerical approach to achieve controlled 3D nanoparticle deposition by drying of colloidal suspension in two pillar-based thin micro-porous architectures. By the design of pillar layout, rectangular-spiral and circular-spiral deposition configurations are obtained globally. By varying the surface wettability, vertically symmetric and sloped nanoparticle depositions can be achieved locally. While the numerical modeling reveals the mechanisms of liquid internal flow, as well as the impact of local drying rate on nanoparticle transport, accumulation and final deposition, the experimental results of deposition configurations validate the controlling strategies. This combined experimental and numerical work provides a framework to achieve desired 3D nanoparticle deposition in thin micro-porous architectures, with a thorough understanding of the underlying mechanisms of two-phase fluid flows, phase change and mass transport.

36 MATERIALS SCIENCE↗

Fast-ion physics in SPARC

Potential loss of energetic ions including alphas and radio-frequency tail ions due to classical orbit effects and magnetohydrodynamic instabilities (MHD) are central physics issues in the design and experimental physics programme of the SPARC tokamak. The expected loss of fusion alpha power due to ripple-induced transport is computed for the SPARC tokamak design by the ASCOT and SPIRAL orbit-simulation codes, to assess the expected surface heating of plasma-facing components. We find good agreement between the ASCOT and SPIRAL simulation results not only in integrated quantities (fraction of alpha power loss) but also in the spatial, temporal and pitch-angle dependence of the losses. If the toroidal field (TF) coils are well-aligned, the SPARC edge ripple is small (0.15–0.30 %), the computed ripple-induced alpha power loss is small ( ~0.25% ) and the corresponding peak surface power density is acceptable ( 244 kW m -2 ). However, the ripple and ripple-induced losses increase strongly if the TF coils are assumed to suffer increasing magnitudes of misalignment. Surface heat loads may become problematic if the TF coil misalignment approaches the centimetre level. Ripple-induced losses of the energetic ion tail driven by ion cyclotron range of frequency (ICRF) heating are not expected to generate significant wall or limiter heating in the nominal SPARC plasma scenario. Because the expected classical fast-ion losses are small, SPARC will be able to observe and study fast-ion redistribution due to MHD including sawteeth and Alfvén eigenmodes (AEs). SPARC's parameter space for AE physics even at moderate Q is shown to reasonably overlap that of the demonstration power plant ARC (Sorbom et al., Fusion Engng Des., vol. 100, 2015, p. 378), and thus measurements of AE mode amplitude, spectrum and associated fast-ion transport in SPARC would provide relevant guidance about AE behaviour expected in ARC.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Magnetism and fermiology of kagome magnet YMn 6 Sn 4 Ge 2

Kagome lattice magnets are an interesting class of materials as they can host topological properties in their magnetic and electronic structures. YMn 6 Sn 6 is one such compound in which various exotic magnetic and electronic topological properties have been realized. Here, by means of a partial substitution of Sn with an isovalent and slightly smaller atom Ge, we demonstrate the sensitivity of such chemical substitution on the magnetic structure and its influence in the electronic properties. Magnetic structure of YMn 6 Sn 4 Ge 2 determined by neutron diffraction reveals an incommensurate staggered magnetic spiral with a slightly larger spiral pitch than in YMn 6 Sn 6 . This change in magnetic structure influences the Fermi surface enhancing the out-of-plane conductivity. Such a sensitivity to the partial chemical substitution provides a great potential for engineering the magnetic phases and associated electronic properties not only in YMn 6 Sn 6 , but also in the large family of 166 rare-earth kagome magnet.

36 MATERIALS SCIENCE↗

Chiral propulsion: The method of effective boundary conditions

We propose to apply an “effective boundary condition” method to the problem of chiral propulsion. For the case of a rotating helix moving through a fluid at a low Reynolds number, the method amounts to replacing the original helix (in the limit of small pitch) by a cylinder, but with a special kind of partial slip boundary conditions replacing the non-slip boundary conditions on the original helix. These boundary conditions are constructed to reproduce far-field velocities of the original problem and are defined by a few parameters (slipping lengths) that can be extracted from a problem in planar rather than cylindrical geometry. We derive the chiral propulsion coefficients for spirals, helicoids, helically modulated cylinders and some of their generalizations using the introduced method. In the case of spirals, we compare our results with the ones derived by Lighthill and find a very good agreement. Here, the proposed method is general and can be applied to any helical shape in the limit of a small pitch. Furthermore, we have established that for a broad class of helical surfaces the dependence of the chiral propulsion on the helical angle θ is universal, x ~ cos θ sin 2θ with the maximal propulsion achieved at the universal angle θ m = tan –1 (1/√2) ≈ 35.26°.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Inhibition mechanisms of AcrF9, AcrF8, and AcrF6 against type I-F CRISPR–Cas complex revealed by cryo-EM

Prokaryotes and viruses have fought a long battle against each other. Prokaryotes use CRISPR–Cas-mediated adaptive immunity, while conversely, viruses evolve multiple anti-CRISPR (Acr) proteins to defeat these CRISPR–Cas systems. The type I-F CRISPR–Cas system in Pseudomonas aeruginosa requires the crRNA-guided surveillance complex (Csy complex) to recognize the invading DNA. Although some Acr proteins against the Csy complex have been reported, other relevant Acr proteins still need studies to understand their mechanisms. As such, here, we obtain three structures of previously unresolved Acr proteins (AcrF9, AcrF8, and AcrF6) bound to the Csy complex using electron cryo-microscopy (cryo-EM), with resolution at 2.57 Å, 3.42 Å, and 3.15 Å, respectively. The 2.57-Å structure reveals fine details for each molecular component within the Csy complex as well as the direct and water-mediated interactions between proteins and CRISPR RNA (crRNA). Our structures also show unambiguously how these Acr proteins bind differently to the Csy complex. AcrF9 binds to key DNA-binding sites on the Csy spiral backbone. AcrF6 binds at the junction between Cas7.6f and Cas8f, which is critical for DNA duplex splitting. AcrF8 binds to a distinct position on the Csy spiral backbone and forms interactions with crRNA, which has not been seen in other Acr proteins against the Csy complex. Our structure-guided mutagenesis and biochemistry experiments further support the anti-CRISPR mechanisms of these Acr proteins. Our findings support the convergent consequence of inhibiting degradation of invading DNA by these Acr proteins, albeit with different modes of interactions with the type I-F CRISPR–Cas system.

59 BASIC BIOLOGICAL SCIENCES↗

Polarization-shape alignment of IllustrisTNG star-forming galaxies

In star-forming disk galaxies, the radio continuum emission (1–10GHz) powered by star formation has an integrated polarization direction imperfectly aligned with the apparent disk minor axis. This polarization-shape alignment effect was previously observed in a small sample of local spirals. If this is prevalent for disk galaxies out to cosmological redshifts, novel measurements of cosmic birefringence and cosmic shear will be enabled by leveraging radio continuum surveys such as the Square Kilometre Array synergized with galaxy shape measurements. We calculate the polarization-shape misalignment angle for star-forming galaxies in the IllustrisTNG50 simulation at 0 < z < 2, assuming that additional polarized radio emission from an active galactic nucleus is negligible in at least a sizable fraction of the star-forming galaxies. The alignment found for z = 0 is consistent with local spiral data, but significantly deteriorates as redshift increases. Moreover, it degrades toward lower frequencies due to internal Faraday depolarization. Thanks to cosmic redshifting, observing higher-z galaxies at a fixed frequency greatly mitigates degradation due to reduced Faraday depolarization at the source-frame frequency. We present analytic fits to the non-Gaussian misalignment angle distribution, and evaluate Fisher information per galaxy for measuring a polarization rotation angle induced by cosmic birefringence. For observation at 4.8 GHz, the effective root-mean-square misalignment angle σα,eff is 18°, 23° and 33° at z = 0, 1 and 2, respectively. Analyzing N independent galaxies reduces the uncertainty on an isotropic cosmic birefringence signal to σ α,eff /√(N), providing competitive sensitivity once large samples are available. As accurate observation-driven models are not yet available for cosmological galaxy samples, our results motivate pilot observations to empirically characterize polarization-shape alignment, and can facilitate forecasts of cosmology and fundamental physics applications that exploit this effect.

axions↗

Close Major-merger Pairs at z = 0: Star-forming Galaxies with Pseudobulges

Abstract We present a study of star-forming galaxies (SFGs) with pseudobulges (bulges with Sérsic indexn< 2) in a local close major-merger galaxy pair sample (H-KPAIR). With data from new aperture photometries in the optical and near-infrared bands (aperture size of 7 kpc) and from the literature, we find that the mean Age of central stellar populations in Spirals with pseudobulges is consistent with that of disky galaxies and is nearly constant against the bulge-to-total ratio (B/T). Paired Spirals have a slightly lower fraction of pure disk galaxies (B/T ≤ 0.1) than their counterparts in the control sample. Compared to SFGs with classical bulges, those with pseudobulges have a higher (>2σ) mean of specific star formation rate (sSFR) enhancement (sSFR enh = 0.33 ± 0.07 versus sSFR enh = 0.12 ± 0.06) and broader scatter (by ∼1 dex). The eight SFGs that have the highest sSFR enh in the sample all have pseudobulges. A majority (69%) of paired SFGs with strong enhancement (having sSFR more than 5 times the median of the control galaxies) have pseudobulges. The Spitzer data show that the pseudobulges in these galaxies are tightly linked to nuclear/circum-nuclear starbursts. Pseudobulge SFGs in S+S and in S+E pairs have significantly (>3σ) different sSFR enhancement, with the means of sSFR enh = 0.45 ± 0.08 and −0.04 ± 0.11, respectively. We find a decrease in the sSFR enhancements with the density of the environment for SFGs with pseudobulges. Since a high fraction (5/11) of pseudobulge SFGs in S+E pairs are in rich groups/clusters (local density N 1Mpc ≥ 7), the dense environment might be the cause for their low sSFR enh .

Astronomy & Astrophysics↗

Secular Outflows from Long-Lived Neutron Star Merger Remnants

We study mass ejection from a binary neutron star merger producing a long-lived massive neutron star remnant with general-relativistic neutrino-radiation hydrodynamics simulations. In addition to outflows generated by shocks and tidal torques during and shortly after the merger, we observe the appearance of a wind driven by spiral density waves in the disk. This spiral-wave-driven outflow is predominantly located close to the disk orbital plane and have a broad distribution of electron fractions. At higher latitudes, a high electron-fraction wind is driven by neutrino radiation. The combined nucleosynthesis yields from all the ejecta components is in good agreement with Solar abundance measurements.

79 ASTRONOMY AND ASTROPHYSICS↗

Gravito-turbulence and dynamo in poorly ionized protostellar discs – I. Zero-net-flux case

In their early stages, protoplanetary discs are sufficiently massive to undergo gravitational instability (GI). This instability is thought to be involved in mass accretion, planet formation via gas fragmentation, the generation of spiral density waves, and outbursts. A key and very recent area of research is the interaction between the GI and magnetic fields in young protoplanetary discs, in particular whether this instability is able to sustain a magnetic field via a dynamo. We conduct 3D, stratified shearing-box simulations using two independent codes, PLUTO and Athena++, to characterize the GI dynamo in poorly ionized protostellar discs subject to ambipolar diffusion. We find that the dynamo operates across a large range of ambipolar Elssaser number Am (which characterizes the strength of ambipolar diffusion) and is particularly strong in the regime Am = 10–100, with typical magnetic to thermal energy ratios of order unity. The dynamo is only weakly dependent on resolution (at least for Am ≲ 100), box size, and cooling law. The magnetic field is produced by the combination of differential rotation and large-scale vertical roll motions associated with spiral density waves. Our results have direct implications for the dynamo process in young protoplanetary discs and possibly some regions of active galactic nucleus discs.

79 ASTRONOMY AND ASTROPHYSICS↗

Galaxy morphological classification catalogue of the Dark Energy Survey Year 3 data with convolutional neural networks

ABSTRACT We present in this paper one of the largest galaxy morphological classification catalogues to date, including over 20 million galaxies, using the Dark Energy Survey (DES) Year 3 data based on convolutional neural networks (CNNs). Monochromatic i-band DES images with linear, logarithmic, and gradient scales, matched with debiased visual classifications from the Galaxy Zoo 1 (GZ1) catalogue, are used to train our CNN models. With a training set including bright galaxies (16 ≤ i < 18) at low redshift (z < 0.25), we furthermore investigate the limit of the accuracy of our predictions applied to galaxies at fainter magnitude and at higher redshifts. Our final catalogue covers magnitudes 16 ≤ i < 21, and redshifts z < 1.0, and provides predicted probabilities to two galaxy types – ellipticals and spirals (disc galaxies). Our CNN classifications reveal an accuracy of over 99 per cent for bright galaxies when comparing with the GZ1 classifications (i < 18). For fainter galaxies, the visual classification carried out by three of the co-authors shows that the CNN classifier correctly categorizes discy galaxies with rounder and blurred features, which humans often incorrectly visually classify as ellipticals. As a part of the validation, we carry out one of the largest examinations of non-parametric methods, including ∼100 ,000 galaxies with the same coverage of magnitude and redshift as the training set from our catalogue. We find that the Gini coefficient is the best single parameter discriminator between ellipticals and spirals for this data set.

79 ASTRONOMY AND ASTROPHYSICS↗

Constraining the Milky Way’s ultraviolet-to-infrared SED with Gaussian process regression

ABSTRACT Improving our knowledge of global Milky Way (MW) properties is critical for connecting the detailed measurements only possible from within our Galaxy to our understanding of the broader galaxy population. We here train Gaussian process regression (GPR) models on SDSS (Sloan Digital Sky Survey) galaxies to map from galaxy properties (stellar mass, apparent axial ratio, star formation rate, bulge-to-total ratio, disc scale length, and bar vote fraction) to ultraviolet (UV; GALEX FUV/NUV), optical (SDSS ugriz), and infrared (IR; 2MASS JHKs and WISE W1/W2/W3/W4) fluxes and uncertainties. With these models, we estimate the photometric properties of the MW, resulting in a full UV-to-IR spectral energy distribution (SED) as it would be measured externally, viewed face-on. We confirm that the MW lies in the green valley in optical diagnostic diagrams, but show for the first time that the MW is in the star-forming region in standard UV and IR diagnostics – characteristic of the population of red spiral galaxies. Although our GPR method predicts one band at a time, the resulting MW UV–IR SED is consistent with SEDs of local spirals with characteristics broadly similar to the MW, suggesting that these independent predictions can be combined reliably. Our UV–IR SED will be invaluable for reconstructing the MW’s star formation history using the same tools employed for external galaxies, allowing comparisons of results from in situ measurements to those from the methods used for extragalactic objects.

79 ASTRONOMY AND ASTROPHYSICS↗

A MeerKAT-meets-LOFAR study of MS 1455.0 + 2232: a 590 kiloparsec ‘mini’-halo in a sloshing cool-core cluster

ABSTRACT Radio mini-haloes are poorly understood, moderately extended diffuse radio sources that trace the presence of magnetic fields and relativistic electrons on scales of hundreds of kiloparsecs, predominantly in relaxed clusters. With relatively few confirmed detections to-date, many questions remain unanswered. This paper presents new radio observations of the galaxy cluster MS 1455.0+2232 performed with MeerKAT (covering the frequency range 872−1712 MHz) and LOFAR (covering 120−168 MHz), the first results from a homogeneously selected mini-halo census. We find that this mini-halo extends for ∼590 kpc at 1283 MHz, significantly larger than previously believed, and has a flatter spectral index (α = −0.97 ± 0.05) than typically expected. Our X-ray analysis clearly reveals a large-scale (254 kpc) sloshing spiral in the intracluster medium. We perform a point-to-point analysis, finding a tight single correlation between radio and X-ray surface brightness with a super-linear slope of $b_{\rm 1283\, MHz} = 1.16^{+0.06}_{-0.07}$ and $b_{\rm 145\, MHz} = 1.15^{+0.09}_{-0.08}$; this indicates a strong link between the thermal and non-thermal components of the intracluster medium. Conversely, in the spectral index/X-ray surface brightness plane, we find that regions inside and outside the sloshing spiral follow different correlations. We find compelling evidence for multiple sub-components in this mini-halo for the first time. While both the turbulent (re-)acceleration and hadronic scenarios are able to explain some observed properties of the mini-halo in MS 1455.0+2232, neither scenario is able to account for all the evidence presented by our analysis.

79 ASTRONOMY AND ASTROPHYSICS↗

WISDOM project – XVIII. Molecular gas distributions and kinematics of three megamaser galaxies

ABSTRACT The co-evolution of galaxies and supermassive black holes (SMBHs) underpins our understanding of galaxy evolution, but different methods to measure SMBH masses have only infrequently been cross-checked. We attempt to identify targets to cross-check two of the most accurate methods, megamaser, and cold molecular gas dynamics. Three promising galaxies are selected from all those with existing megamaser SMBH mass measurements. We present Atacama Large Millimeter/sub-millimeter Array (ALMA) 12CO (2–1) and 230-GHz continuum observations with angular resolutions of ≈0${_{.}^{\prime\prime}}$5. Every galaxy has an extended rotating molecular gas disc and 230-GHz continuum source(s), but all also have irregularities and/or non-axisymmetric features: NGC 1194 is highly inclined and has disturbed and lopsided central 12CO (2–1) emission; NGC 3393 has a nuclear disc with fairly regular but patchy 12CO (2–1) emission with little gas near the kinematic major axis, faint emission in the very centre, and two brighter structures reminiscent of a nuclear ring and/or spiral; NGC 5765B has a strong bar and very bright 12CO (2–1) emission concentrated along two bisymmetric offset dust lanes and two bisymmetric nuclear spiral arms. 12CO (2–1) and 12CO (3–2) observations with the James Clerk Maxwell Telescope are compared with the ALMA observations. Because of the disturbed gas kinematics and the impractically long integration times required for higher angular resolution observations, none of the three galaxies is suitable for a future SMBH mass measurement. None the less, increasing the number of molecular gas observations of megamaser galaxies is valuable, and the ubiquitous disturbances suggest a link between large-scale gas properties and the existence of megamasers.

Liang, Fu-Heng (ORCID:0000000324961247)↗

Probing the rapid formation of black holes and their Galaxy hosts in QSOs

Using the modelling code x-cigale, we reproduced the spectral energy distributions (SEDs) of 1359 SDSS quasi-stellar objects (QSOs) within the redshift range 0 < z < 4, for which we have NIR/MIR fluxes with the highest quality and spectral data characterizing their supermassive black hole (SMBHs). Consistent with a rapid formation of the host galaxies, the star formation histories (SFHs) have small e-folding, at most 750 Myr using an SFH function for spiral or 1000 Myr using one for elliptical. Above z ∼ 1.6, the two solutions are degenerate, the SEDs being dominated by the active galactic nucleus (AGN) continuum and high star formation rates (SFRs), typical of starburst galaxies, while at lower redshifts the starburst nature of the host, independent from its morphology, is better reproduced by a spiral SFH. In general, the SFR increases with the redshift, the mass of the bulge, the AGN luminosity, and Eddington ratio, suggesting there is no evidence of AGN quenching of star formation. Comparing the specific BH accretion rate (BHAR) with specific SFR, all the QSOs at any redshift trace a linear sequence below the Eddington luminosity, in parallel and above the one-to-one relation, implying that QSOs are in a special phase of evolution during which the growth in mass of their SMBH is more rapid than the growth in mass of their galaxy hosts. This particular phase is consistent with a scenario where the galaxy hosts of QSOs in the past grew in mass more rapidly than their SMBHs, suggesting that a high star formation efficiency during their formation was responsible in limiting their masses.

79 ASTRONOMY AND ASTROPHYSICS↗

Repainting the colour–mass diagrams by unearthing the green mountain: dust-rich S0 galaxies in the colour–(galaxy stellar mass) diagram, and the colour–(black hole mass) relations for dust-poor versus dust-rich galaxies

ABSTRACT Lenticular galaxies are notoriously misclassified as elliptical galaxies and, as such, a (disc inclination)-dependent correction for dust is often not applied to the magnitudes of dusty lenticular galaxies. This results in overly red galaxy colours, impacting their distribution in the colour–magnitude diagram. It is revealed how this has led to an underpopulation of the ‘green valley’ by hiding a ‘green mountain’ of massive dust-rich lenticular galaxies – known to be built from gas-rich major mergers – within the ‘red sequence’ of colour–(stellar mass) diagrams. Correcting for dust, a ‘green mountain’ appears at M*,gal ∼ 1011 M⊙, along with signs of an extension to lower masses producing a ‘green range’ or ‘green ridge’ on the green side of the ‘red sequence’ and ‘blue cloud.’ The ‘red sequence’ is shown to be comprised of two components: a red plateau defined by elliptical galaxies with a near-constant colour and by lower-mass dust-poor lenticular galaxies, which are mostly a primordial population but may include faded/transformed spiral galaxies. The presence of the quasi-triangular-shaped galaxy evolution sequence, previously called the ‘Triangal’, is revealed in the galaxy colour–(stellar mass) diagram. It tracks the speciation of galaxies and their associated migration through the diagram. The connection of the ‘Triangal’ to previous galaxy morphology sequences (Fork, Trident, and Comb) is also shown herein. Finally, the colour–(black hole mass) diagram is revisited, revealing how the dust correction generates a blue–green sequence for the spiral and dust-rich lenticular galaxies that is offset from a green–red sequence defined by the dust-poor lenticular and elliptical galaxies.

Graham, Alister W. (ORCID:0000000264969414)↗

The three-dimensional structure of black hole accretion flows within the plunging region

ABSTRACT We analyse, using new analytical models and numerical general relativistic magnetohydrodynamic simulations, the three-dimensional properties of accretion flows inside the plunging region of black hole spacetimes (i.e. at radii smaller than the innermost stable circular orbit). These simulations are of thick discs, with aspect ratios of order unity $h/r \sim 1$, and with a magnetic field geometry given by the standard low-magnetization ‘SANE’ configuration. This work represents the first step in a wider analysis of this highly relativistic region. We show that analytical expressions derived in the ‘thin disc’ limit describe the numerical results remarkably well, despite the large aspect ratio of the flow. We further demonstrate that accretion within this region is typically mediated via spiral arms, and that the geometric properties of these spiral structures can be understood with a simple analytical model. These results highlight how accretion within the plunging region is fundamentally two-dimensional in character, which may have a number of observational implications. We derive a modified theoretical description of the pressure within the plunging region which accounts for turbulent heating and may be of use to black hole image modelling.

Astronomy & Astrophysics↗