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At least 163 records · Page 9

¡Viva la mitochondria!: harnessing yeast mitochondria for chemical production

ABSTRACT The mitochondria, often referred to as the powerhouse of the cell, offer a unique physicochemical environment enriched with a distinct set of enzymes, metabolites and cofactors ready to be exploited for metabolic engineering. In this review, we discuss how the mitochondrion has been engineered in the traditional sense of metabolic engineering or completely bypassed for chemical production. We then describe the more recent approach of harnessing the mitochondria to compartmentalize engineered metabolic pathways, including for the production of alcohols, terpenoids, sterols, organic acids and other valuable products. We explain the different mechanisms by which mitochondrial compartmentalization benefits engineered metabolic pathways to boost chemical production. Finally, we discuss the key challenges that need to be overcome to expand the applicability of mitochondrial engineering and reach the full potential of this emerging field.

Biotechnology & Applied Microbiology↗

Weak Production of Strange and Charmed Ground-State Baryons in Nuclei

We present results for the quasielastic weak production of Λ and Σ hyperons induced by ν¯ scattering off nuclei in the kinematical region of interest for accelerator neutrino experiments. We employ realistic hole spectral functions and we describe the propagation of the hyperons in the nuclear medium by means of a Monte Carlo cascade. The latter strongly modifies the kinematics and the relative production rates of the hyperons, leading to a nonvanishing Σ+ cross section, to a sizable enhancement of the Λ production and to a drastic reduction of the Σ0 and Σ− distributions. We also compute the quasielastic weak Λc production cross section, paying special attention to estimate the uncertainties induced by the model dependence of the vacuum n→Λc weak matrix element. In this regard, the recent BESIII measurements of the branching ratios of Λc→Λl+νl (l=e,μ) are used to benchmark the available theoretical predictions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Observation and measurements of the production of prompt and non-prompt ${\text {J}\psi }$ mesons in association with a ${Z}$ boson in ${pp}$ p p collisions at ${\sqrt{s}= 8\,\text {TeV}}$ with the ATLAS detector

The production of a Z boson in association with a J/ψ meson in proton–proton collisions probes the production mechanisms of quarkonium and heavy flavour in association with vector bosons, and allows studies of multiple parton scattering. Using 20.3 fb -1 of data collected with the ATLAS experiment at the LHC in pp collisions at √s=8TeV, the first measurement of associated Z + J/ψ production is presented for both prompt and non-prompt J/ψ production, with both signatures having a significance in excess of 5σ. The inclusive production cross-sections for Z boson production (analysed in μ + μ - or e + e - decay modes) in association with prompt and non-prompt J/ψ( → μ + μ - ) are measured relative to the inclusive production rate of Z bosons in the same fiducial volume to be (36.8 ± 6.7 ± 2.5) × 10 -7 and (65.8 ± 9.2 ± 4.2) × 10 -7 respectively. Normalised differential production cross-section ratios are also determined as a function of the Jψ transverse momentum. As a result, the fraction of signal events arising from single and double parton scattering is estimated, and a lower limit of 5.3 (3.7) mb at 68 (95)% confidence level is placed on the effective cross-section regulating double parton interactions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Measurements of the Higgs boson production and decay rates and coupling strengths using pp collision data at $\sqrt{s} = 7$ and 8 TeV in the ATLAS experiment

Combined analyses of the Higgs boson production and decay rates as well as its coupling strengths to vector bosons and fermions are presented. The combinations include the results of the analyses of the H → γγ,ZZ*,WW*,Zγ, $b\bar{b}$,ττ and μμ decay modes, and the constraints on the associated production with a pair of top quarks and on the off-shell coupling strengths of the Higgs boson. The results are based on the LHC proton-proton collision datasets, with integrated luminosities of up to 4.7 fb- 1 at s√ = 7 TeV and 20.3 fb -1 at s√ = 8 TeV, recorded by the ATLAS detector in 2011 and 2012. Combining all production modes and decay channels, the measured signal yield, normalised to the Standard Model expectation, is 1.18 +0.15 -0.14 . The observed Higgs boson production and decay rates are interpreted in a leading-order coupling framework, exploring a wide range of benchmark coupling models both with and without assumptions on the Higgs boson width and on the Standard Model particle content in loop processes. The data are found to be compatible with the Standard Model expectations for a Higgs boson at a mass of 125.36 GeV for all models considered.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Diving into Petascale Production File Systems through Large Scale Profiling and Analysis

As leadership computing facilities grow their storage capacity into the multi- petabyte range, the number of files and directories leap into the scale of billions. A complete profiling of such a parallel file system in a production environment presents a unique challenge. On one hand, the time, resources, and negative performance impact on production users can make regular profiling difficult. On the other hand, the result of such profiling can yield much needed understanding of the file system's general characteristics, as well as provide insight to how users write and access their data on a grand scale. This paper presents a lightweight and scalable profiling solution that can efficiently walk, analyze, and profile multi-petabyte parallel file systems. This tool has been deployed and is in regular use on very large-scale production parallel file systems at both Oak Ridge National Lab's Oak Ridge Leadership Facility (OLCF) and Lawrence Livermore National Lab's Livermore Computing (LC) facilities. We present the results of our initial analysis on the data collected from these two large-scale production systems, organized into three use cases: (1) file system snapshot and composition, (2) striping pattern analysis for Lustre, and (3) simulated storage capacity utilization in preparation for future file systems. Our analysis shows that on the OLCF file system, over 96% of user files exhibit the default stripe width, potentially limiting performance on large files by underutilizing storage servers and disks. Our simulated block analysis quantitatively shows the space overhead when doing a forklift system migration. It also reveals that due to the difference in system compositions (OLCF vs. LC), we can achieve better performance and space trade-offs by employing different native file system block sizes.

Wang, Feiyi↗

Data for Metabolic Engineering of Nonmodel Yeast Issatchenkia orientalis SD108 for 5-Aminolevulinic Acid Production

Biological production of 5‐aminolevulinic acid (5‐ALA) has received growing attentionover theyears.However, thereis the tradeoff between 5‐ALA biosynthesis and cell growth because the fermentation broth will become acidic due to the production of 5‐ALA. To address this limitation, we engineered an acid‐tolerant yeast, Issatchenkia orientalis SD108, for 5‐ALA production. We first discovered that the cell growth rate of I. orientalis SD108 was boosted by 5‐ALA and its endogenous ALA synthetase (ALAS) showed higher activity than those homologs from other yeasts. The titer of 5‐ALA was improved from 28mg/L to 120‐, 150‐, and 300mg/L, by optimizing plasmid design, overexpressing a transporter, and increasing gene copy number, respectively. After redirecting the metabolic flux using the pyruvate decarboxylase (PDC) knockout strain (SD108ΔPDC) and culturing with urea, we increased the titer of 5‐ALA to 510mg/L, a 13‐fold enhancement, proving the importance of the newly identified IoALAS with higher activity and the strategic selection of nitrogen sources for knockout strains. This study demonstrates the acid‐tolerant I. orientalis SD108ΔPDC has a high potential for 5‐ALA production at a large scale in the future.

Bioproducts↗

Can the Results of Biodiversity-Ecosystem Productivity Studies Be Translated to Bioenergy Production?

Biodiversity experiments show that increases in plant diversity can lead to greater biomass production, and some researchers suggest that high diversity plantings should be used for bioenergy production. However, many methods used in past biodiversity experiments are impractical for bioenergy plantings. For example, biodiversity experiments often use intensive management such as hand weeding to maintain low diversity plantings and exclude unplanted species, but this would not be done for bioenergy plantings. Also, biodiversity experiments generally use high seeding densities that would be too expensive for bioenergy plantings. Here we report the effects of biodiversity on biomass production from two studies of more realistic bioenergy crop plantings in southern Michigan, USA. One study involved comparing production between switchgrass (Panicum virgatum) monocultures and species-rich prairie plantings on private farm fields that were managed similarly to bioenergy plantings. The other study was an experiment where switchgrass was planted in monoculture and in combination with increasingly species-rich native prairie mixtures. Overall, we found that bioenergy plantings with higher species richness did not produce more biomass than switchgrass monocultures. The lack of a positive relationship between planted species richness and production in our studies may be due to several factors. Non-planted species (weeds) were not removed from our studies and these non-planted species may have competed with planted species and also prevented realized species richness from equaling planted species richness. Also, we found that low seeding density of individual species limited the biomass production of these individual species. Finally, production in future bioenergy plantings with high species richness may be increased by using a high density of inexpensive seed from switchgrass and other highly productive species, and future efforts to translate the results of biodiversity experiments to bioenergy plantings should consider the role of seeding density.

59 BASIC BIOLOGICAL SCIENCES↗

Prospects of hydrogen cogeneration and carbon dioxide utilization in electrochemical refineries for ethylene production via oxidative coupling of methane: A techno-economic assessment

Ethylene is recognized as one of the most significant chemicals globally. The projected ethylene production for 2023 stands at 227.6 million tonnes, with expectations of continued demand growth. The primary use of ethylene, accounting for over 76%, lies in the production of plastics such as polyethylene, polyvinyl chloride, and polystyrene. Despite the enduring carbon retention potential of plastics themselves, traditional ethylene feedstock production from fossil resources contributes substantially to greenhouse gas emissions, ranging from 0.29 to 2.29 kg CO2 /kg Ethylene depending on various factors like feedstock and process design. Various decarbonization strategies, including the utilization of hydrogen as a primary heat source, have been proposed to reduce the carbon footprint of ethylene production, but their efficacy remains limited, offering at best a 0–30% reduction in on-site CO 2 emissions.

09 BIOMASS FUELS↗

Data from: Can the results of biodiversity-ecosystem productivity studies be translated to bioenergy production?

Biodiversity experiments show that increases in plant diversity can lead to greater biomass production, and some researchers suggest that high diversity plantings should be used for bioenergy production. However, many methods used in past biodiversity experiments are impractical for bioenergy plantings. For example, biodiversity experiments often use intensive management such as hand weeding to maintain low diversity plantings and exclude unplanted species, but this would not be done for bioenergy plantings. Also, biodiversity experiments generally use high seeding densities that would be too expensive for bioenergy plantings. Here we report the effects of biodiversity on biomass production from two studies of more realistic bioenergy crop plantings in southern Michigan, USA. One study involved comparing production between switchgrass (Panicum virgatum) monocultures and species-rich prairie plantings on private farm fields that were managed similarly to bioenergy plantings. The other study was an experiment where switchgrass was planted in monoculture and in combination with increasingly species-rich native prairie mixtures. Overall, we found that bioenergy plantings with higher species richness did not produce more biomass than switchgrass monocultures. The lack of a positive relationship between planted species richness and production in our studies may be due to several factors. Non-planted species (weeds) were not removed from our studies and these non-planted species may have competed with planted species and also prevented realized species richness from equaling planted species richness. Also, we found that low seeding density of individual species limited the biomass production of these individual species. Production in future bioenergy plantings with high species richness may be increased by using a high density of inexpensive seed from switchgrass and other highly productive species, and future efforts to translate the results of biodiversity experiments to bioenergy plantings should consider the role of seeding density.

09 BIOMASS FUELS↗

A comparison of photointerpretive and digital production methods for four key remote sensing-based information products

This paper evaluates the costs of producing four remote sensing-based information products: timber volume estimate tables, Level II land use/land cover maps, soil maps, and vegetative cover maps. Two production methods for each product are evaluated, one is based on digital processing of satellite data, and the other on conventional photointerpretation of aircraft data. For each product, a comparison is conducted of the two strategies' production costs (including data acquisition, 'ground truthing', interpretation, compilation, and printing charges) and their performance (as measured by accuracy and timeliness). Each of the production methods reviewed has been demonstrated - either operationally or experimentally - and the costs, timeliness and other performance estimates presented are based on observations made in practice. The results show that for these products, satellite-based production results in significant cost and timeliness improvements at the cost of a loss in accuracy.

Eastwood, L. F., Jr.↗

Mars Observer data production, transfer, and archival: The data production assembly line

This paper describes the data production, transfer, and archival process designed for the Mars Observer Flight Project. It addresses the developmental and operational aspects of the archive collection production process. The developmental aspects cover the design and packaging of data products for archival and distribution to the planetary community. Also discussed is the design and development of a data transfer and volume production process capable of handling the large throughput and complexity of the Mars Observer data products. The operational aspects cover the main functions of the process: creating data and engineering products, collecting the data products and ancillary products in a central repository, producing archive volumes, validating volumes, archiving, and distributing the data to the planetary community.

Childs, David B.↗

Production and Distribution of Global Products From MODIS

The Moderate Resolution Imaging Spectroradiometer was launched on the EOS Terra spacecraft in December 1999 and will also fly on EOS Aqua in December 2000. With 36 spectral bands from the visible through thermal infrared and spatial resolution of 250m to 1 kilometer, each MODIS instrument will image the entire Earth surface in 2 days. This paper traces the flow of MODIS data products from the receipt of Level 0 data at the EDOS facility, through the production and quality assurance process to the Distributed Active Archive Centers (DAACs), which ship products to the user community. It describes where to obtain products and plans for reprocessing MODIS products. As most components of the ground system are severely limited in their capacity to distribute MODIS products, it also describes the key characteristics of MODIS products and their metadata that allow a user to optimize their selection of products given anticipate bottlenecks in distribution.

Masuoka, Edward↗

Geospatial Method for Computing Supplemental Multi-Decadal U.S. Coastal Land-Use and Land-Cover Classification Products, Using Landsat Data and C-CAP Products

This paper discusses the development and implementation of a geospatial data processing method and multi-decadal Landsat time series for computing general coastal U.S. land-use and land-cover (LULC) classifications and change products consisting of seven classes (water, barren, upland herbaceous, non-woody wetland, woody upland, woody wetland, and urban). Use of this approach extends the observational period of the NOAA-generated Coastal Change and Analysis Program (C-CAP) products by almost two decades, assuming the availability of one cloud free Landsat scene from any season for each targeted year. The Mobile Bay region in Alabama was used as a study area to develop, demonstrate, and validate the method that was applied to derive LULC products for nine dates at approximate five year intervals across a 34-year time span, using single dates of data for each classification in which forests were either leaf-on, leaf-off, or mixed senescent conditions. Classifications were computed and refined using decision rules in conjunction with unsupervised classification of Landsat data and C-CAP value-added products. Each classification's overall accuracy was assessed by comparing stratified random locations to available reference data, including higher spatial resolution satellite and aerial imagery, field survey data, and raw Landsat RGBs. Overall classification accuracies ranged from 83 to 91% with overall Kappa statistics ranging from 0.78 to 0.89. The accuracies are comparable to those from similar, generalized LULC products derived from C-CAP data. The Landsat MSS-based LULC product accuracies are similar to those from Landsat TM or ETM+ data. Accurate classifications were computed for all nine dates, yielding effective results regardless of season. This classification method yielded products that were used to compute LULC change products via additive GIS overlay techniques.

Spruce, J. P.↗

Exploring Sustained Food Production in the Veggie Vegetable Production System

Since 2014, the Veggie vegetable production system on the International Space Station has intermittently supplied astronaut crews with fresh produce. To assess the potential for continuous crop production in Veggie and develop a baseline for future space crop production systems, a 120-day study was conducted to determine methodology for inputs, optimal yield, food safety standards, and crew involvement. ‘Amara’ mustard and ‘Red Russian’ kale were grown as initial crops, followed by ‘Extra Dwarf’ pakchoi and shungiku as final crops. Previous grow-outs in Veggie have included harvests at 28-35 days after initiation. In this study, a 56-day grow-out with multiple harvests from the same plants was compared to the conventional, single harvest Veggie schedule. Unlike previous Veggie studies which grew all plants simultaneously, this test staggered initiation and harvest, aiming for consistent and increased production. Plant pillows were initiated in pairs weekly and positioned to reduce shading. Completed pillows were immediately replaced with fresh ones. The multi-harvest scheme used fewer pillows, totaling 46% less pillow mass than the single harvest method. Yield varied by crop and harvest scheme, when compared as fresh edible biomass production across 56-day time increments. ‘Red Russian’ kale yielded similarly across harvest schemes. In the multiple-harvest schedule, ‘Amara’ mustard and shungiku yielded 23% to 25% higher, respectively, while ‘Extra Dwarf’ pakchoi had 43% lower yield. Microbial analysis of the plants indicated no culturable human pathogens. Microbial load of a given plant appeared to depend more on system age than plant age; across harvest methods, aerobic plate counts from final crops were higher than those of initial crops. This project also considered the complexity of crew involvement in a continuous production scenario. New crew procedures that periodically remove plant material from the Veggie root mat would be needed under continuous production to prevent potential pathogens and unpleasant odors. This study supports future space crop production scenarios and was funded by NASA’s Human Research Program.

Jess M Bunchek↗

Comparison of the CALIPSO Level 3 Ice Cloud Product with the DARDAR and 2C-ICE products

Understanding the vertical distribution of ice clouds is crucial for climate modeling and weather forecasting. Since its launch to space in 2006, the Cloud-Aerosol Lidar with Orthogonal Polarization instrument (CALIOP) onboard the CALIPSO spacecraft has been providing unprecedented high-quality profiles of ice clouds, especially optically thin cirrus clouds, during both day and night, on a global scale. Recently the lidar science working group at the NASA Langley Research Center delivered a level 3 (L3) ice cloud product which reports monthly statistics of ice cloud extinction coefficient and ice water content on a uniform 3-dimensional spatial grid. This presentation compares the ice cloud climatology derived from this product with two other ice cloud products, namely the raDAR/liDAR(DARDAR) ice cloud product and the CloudSat-CALIPSO Ice Cloud Property Product (2C-ICE). Using processing similar to the CALIPSO L3 product, granules of DARDAR and 2C-ICE data have been processed into monthly statistics for a better comparison. Similarities and differences will be presented and discussed. The findings illustrate the strengths of the different products and help to identify which product might be most appropriate for a given research topic.

Xia Cai↗

The Modeling of Synfuel Production Process: ASPEN Model of FT production with electricity demand provided at LWR scale

Synfuels, or electro-fuels (e-fuels) have the unique potential to significantly reduce greenhouse gas (GHG) emissions across the transportation sector. This is especially true for applications with substantial payloads and daily miles traveled, such as long-haul heavy-duty vehicles, rail locomotives, marine vessels and aviation aircrafts that are challenging to directly electrify via battery or fuel cell powertrain technologies. Synfuels, or electro-diesel/electro-jet fuels, have similar properties with the incumbent petroleum fuels, compatible with current infrastructure but have much lower GHG emissions relative to the petroleum counterpart, because they utilize waste carbon dioxide (CO2) streams and green hydrogen (H2) sourced from electrolysis. To achieve substantial reductions in GHG emissions, electricity sources must be zero carbon or near-zero carbon, which is the case with solar, wind, hydro and nuclear power. Compared to the intermittency of solar, wind and hydro, nuclear energy provides a steady energy source. In addition, it’s advantageous for nuclear power to produce synfuels because it provides not only near-zero carbon electricity to displace grid electricity, but also near-zero carbon steam to displace carbon-intensive natural gas combustion for steam generation. The availability of electricity and steam also enables more efficient green hydrogen production by using high-temperature electrolysis. In this work, Argonne National Laboratory (ANL) models a synfuel production process via the Fischer- Tropsch (FT) reaction by using nuclear power to provide electricity and steam. In 2021, using ASPEN Plus software, ANL established a detailed process model of a stand-alone FT production facility, assuming feedstocks of pure CO2 and H2. This stand-alone model can be expanded to integrate H2 production from nuclear power via low-temperature and high-temperature electrolysis at light-water reactor (LWR) scale. This report summarizes the stand-alone ASPEN Plus model results with a detailed mass and energy analysis. Our modeled facility produces 351 MT/day (130,000 gal/day) of FT fuel (a mixture of naphtha, jet fuel, and diesel) by converting 223 MT/day of H2 and 2,387 MT/day of CO2. The FT fuel production energy efficiency is 58% and the carbon conversion efficiency (from CO2 to FT fuel) is 46%. The production of green hydrogen requires 390–470 MWe of electricity, which is compared with the capacity of an LWR plant. For the stand-alone FT process, the detailed energy demand (electricity and heat) is summarized in the table below. Based on the energy supply source and the required temperature, potential insertion points of nuclear energy are identified. Based on the potential nuclear energy utilization, this report discusses potential modification options for expanding the system boundary to integrate nuclear power use, for example on-site hydrogen production via water electrolysis. Modeling of the integrated system is conducted by closely working with ANL and Idaho National Laboratory (INL) collaborators to harmonize design parameters of nuclear plants and the FT production process.

Zang, Guiyan↗

Annual productivity and lipid composition of native microalgae (Chlorophyta) at a pilot production facility in Southern California

Microalgae are an efficient platform for the sustainable production of foods, fuels, and bioproducts. Due to the vast natural diversity of microalgae, choosing an ideal species for production can be challenging, and laboratory-derived productivity data may be misleading. In the present study, nine species of green algae (Chlorophyta) were isolated directly from an outdoor pilot production facility, identified via sequencing and microscopy, cultured under standard laboratory conditions to assess lipid content, and then cultivated in 80-L cultures in a greenhouse over the course of a year to assess productivity. Analysis of lipid content from laboratory-grown cultures revealed that these strains had high concentrations of C16 and C18 fatty acids and lipid content not exceeding 30% of dry weight during growth phase. In the greenhouse, Parachlorella kessleri-SD23 had the highest annual productivity, yielding an annual average of approximately 19 g/m 2 /d and 88 mg/L/d of biomass productivity. Furthermore, P. kessleri-SD23 had a total lipid content equal to about 19% of dry weight during growth phase under laboratory conditions with the highest concentration of C18:2 and C18:3 fatty acids among the isolates.

09 BIOMASS FUELS↗

Development of integrated screening, cultivar optimization, and verification research (DISCOVR): A coordinated research-driven approach to improve microalgal productivity, composition, and culture stability for commercially viable biofuels production

To address major knowledge gaps and barriers to the commercial development of algal biomass for biofuels and co-products, a collaborative consortium, Development of Integrated Screening, Cultivar Optimization, and Verification Research (DISCOVR), was established in 2016. Funded by the U.S. Department of Energy (DOE) Bioenergy Technologies Office (BETO), this consortium constitutes a partnership between four DOE national laboratories - Pacific Northwest National Laboratory (PNNL), Los Alamos National Laboratory (LANL), the National Renewable Energy Laboratory (NREL), and Sandia National Laboratories (SNL) - and the Arizona Center for Algae Technology and Innovation (AzCATI) at Arizona State University. To address the barriers of strain selection for achieving high seasonal productivities with a suitable composition and culture resilience, a tiered strain down-selection pipeline is implemented. At Tier I, the temperature and salinity tolerance of strains is determined in flask cultures; at Tier II, the areal biomass productivity and composition is determined in climate-simulation photobioreactors; at Tier III, the productivity and culture stability are determined in outdoor raceways. The top performing strains move forward to long-term testing at the algae testbed site at AzCATI to generate annual biomass productivity data. Concurrent to the strain down-selection in the DISCOVR pipeline, hypotheses for increasing biomass productivity, shifting biomass composition to enhance intrinsic value, and improving culture stability and resistance to pests are also tested. Techno-economic analyses are carried out to determine whether promising findings from laboratory studies or proposed modifications in outdoor pond cultivation conditions translate into reductions in the minimum biomass selling price (MBSP). Notably, in the three years following the launch of DISCOVR, annual biomass productivity has increased from 11.7 to 17.6 g m -2 day -1 , resulting in an MBSP decrease from 824 to 611 $ ton -1 .

09 BIOMASS FUELS↗