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DOE OSTI2024

Linking Spatiotemporal Biological Data to Predict Harmful Algal Blooms

Cyanobacterial Harmful Algal Blooms (cHABs) have significant impacts on an affected region’s economy, ecology, and human health. The blooms can release toxins that kill fish and poison water for people and animals. The global adverse effects of cHABs are exacerbated by the consequences of climate change and increased pollution. Though the phenomena are well documented, scientists’ efforts to mitigate the damage are hampered by insufficient predictive models and incomplete granular knowledge of cHAB community structure. With a goal of leveraging bioinformatics and machine learning tools to better understand and predict cHABs, we are first exploring water sample data sets. Using nearly four thousand samples from the National Center for Biotechnology Information Sequence Read Archive (NCBI-SRA) across 16 years with latitude and longitude embedded in the metadata, we mapped the location of the samples onto a Lake Erie shape file. We combined information about location, date, and community taxa in the NCBI samples to discover factors that determine cHAB features. The data are separated into three distinct zones, with the majority pooled at the southwest end of the lake and occurring in 2017. The samples are rich in biological data; our next steps are to carry out whole genome sequence analysis and use the community profiles as part of our predictive machine learning model.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2025

Automatic Image Point Matching

Sparse Image Point Matching (SIPM) is a foundational technology for photo triangulation, structure from motion (SfM), Simultaneous Location and Mapping (SLAM), and data fusion. The goal of the matching is to automatically generate sets of image coordinates that identify the same feature across images. Ideally, the process should be robust to lighting, scale, perspective, and modality changes. The scope of the image matching topic in the field of remote sensing (RS) is enormous because of the variety of collection platforms, modalities, sensor types, applications, and subjects. In this work, we report the history of and assess the state of the art of visible-spectrum (panchromatic and color) image matching of the Earth’s surface. Work specific to large-format images (LFI) (e.g., metric aerial cameras and Earth-observing satellites) will be highlighted. However, the state of the art in this century will mostly be traced through machine vision research and benchmarks because research specific to LFI is rare.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2022

Mapping the Spatial Distribution of Fibrillar Polymorphs in Human Brain Tissue

Alzheimer’s disease (AD) is a neurodegenerative disorder defined by the progressive formation and spread of fibrillar aggregates of Aβ peptide and tau protein. Polymorphic forms of these aggregates may contribute to disease in varying ways since different neuropathologies appear to be associated with different sets of fibrillar structures and follow distinct pathological trajectories that elicit characteristic clinical phenotypes. The molecular mechanisms underlying the spread of these aggregates in disease may include nucleation, replication, and migration all of which could vary with polymorphic form, stage of disease, and region of brain. Given the linkage between mechanisms of progression and distribution of polymorphs, mapping the distribution of fibrillar structures in situ has the potential to discriminate between mechanisms of progression. However, the means of carrying out this mapping are limited. Optical microscopy lacks the resolution to discriminate between polymorphs in situ, and higher resolution tools such as ssNMR and cryoEM require the isolation of fibrils from tissue, destroying relevant spatial information. Here, we demonstrate the use of scanning x-ray microdiffraction (XMD) to map the locations of fibrillar polymorphs of Aβ peptides and tau protein in histological thin sections of human brain tissue. Coordinated examination of serial sections by immunohistochemistry was used to aid in the interpretation of scattering patterns and to put the observations in a broader anatomical context. Scattering from lesions in tissue shown to be rich in Aβ fibrils by immunohistochemistry exhibited scattering patterns with a prototypical 4.7 Å cross-β peak, and overall intensity distribution that compared well with that predicted from high resolution structures. Scattering from lesions in tissue with extensive tau pathology also exhibited a 4.7 Å cross-β peak but with intensity distributions that were distinct from those seen in Aβ-rich regions. In summary, these observations demonstrate that XMD is a rich source of information on the distribution of fibrillar polymorphs in diseased human brain tissue. When used in coordination with neuropathological examination it has the potential to provide novel insights into the molecular mechanisms underlying disease.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2018

Applying Electrical Resistivity Tomography in Ornamental Stone Mining: Challenges and Solutions

In this study, the use of electrical resistivity tomography (ERT) as a tool to guide ornamental stone extraction is investigated. ERT is not conventionally used in highly resistive environments, such as on rock faces, due to the high contact resistances that can impede current injection. Here, the challenges of conducting ERT in such environments are discussed and possible solutions suggested. For this, an example of the application of ERT in a deep and narrow marble quarry is used. The marble deposit is affected by fracturing and karstification. Due to the nature of these features, they present a significant resistivity contrast to the background resistivity of the marble and thus excellent targets to test the application of ERT. Their location was mapped using field observations and complementary ground penetrating radar data. By using an appropriate sensor deployment, a suitable resistivity meter, and advanced data processing routines, the derived 3D resistivity model is in good agreement with the independent observations. This shows that despite the challenges, ERT can be used as a non-invasive tool to obtain information on the stone properties prior to extraction. This will help in guiding quarry operations and will allow for a targeted, safe and efficient extraction of high quality stone, thereby increasing sustainability and economical competitiveness.

58 GEOSCIENCES↗

NASA NTRS1973

ERTS Applications in earthquake research and mineral exploration in California

Examples that ERTS imagery can be effectively utilized to identify, locate, and map faults which show geomorphic evidence of geologically recent breakage are presented. Several important faults not previously known have been identified. By plotting epicenters of historic earthquakes in parts of California, Sonora, Mexico, Arizona, and Nevada, we found that areas known for historic seismicity are often characterized by abundant evidence of recent fault and crustal movements. There are many examples of seismically quiet areas where outstanding evidence of recent fault movements is observed. One application is clear: ERTS-1 imagery could be effectively utilized to delineate areas susceptible to earthquake recurrence which, on the basis of seismic data alone, may be misleadingly considered safe. ERTS data can also be utilized in planning new sites in the geophysical network of fault movement monitoring and strain and tilt measurements.

Abdel-Gawad, M.↗

NASA NTRS1977

Integration of remote sensing and surface geophysics in the detection of faults

Remote sensing was included in a comprehensive investigation of the use of geophysical techniques to aid in underground mine placement. The primary objective was to detect faults and slumping, features which, due to structural weakness and excess water, cause construction difficulties and safety hazards in mine construction. Preliminary geologic reconnaissance was performed on a potential site for an underground oil shale mine in the Piceance Creek Basin of Colorado. LANDSAT data, black and white aerial photography and 3 cm radar imagery were obtained. LANDSAT data were primarily used in optical imagery and digital tape forms, both of which were analyzed and enhanced by computer techniques. The aerial photography and radar data offered supplemental information. Surface linears in the test area were located and mapped principally from LANDSAT data. A specific, relatively wide, linear pointed directly toward the test site, but did not extend into it. Density slicing, ratioing, and edge enhancement of the LANDSAT data all indicated the existence of this linear. Radar imagery marginally confirmed the linear, while aerial photography did not confirm it.

Jackson, P. L.↗

NASA NTRS1983

The inner edge of the plasma sheet and the diffuse aurora

Three dimensional measurements from the ISEE-1 low energy electron spectrometer are used to map the location of the inner edge of the plasma sheet and study the anisotropies in the electron distribution function associated with this boundary. Lower energy plasma sheet electrons have inner edges closer to the Earth than higher energies with the separations at different energies being larger near dawn and after dusk than at midnight. Lowest energy inner edges are frequently located adjacent to the plasmapause in the dawn hemisphere but are often separated from it in the dusk hemisphere by a gap of at least several Re. The energy dispersion is minimal in the afternoon quadrant where the inner edge is near the magnetopause and frequently oscillating on a time scale of minutes. The location of the inner edge is probably determined primarily by the motion of electrons in the existing electric and magnetic fields rather than by strong diffusion as has sometimes been supposed.

Fairfield, D. H.↗

NASA NTRS1982

Laser velocimeter for large wind tunnels

The measurement of velocity in large wind tunnels is normally performed using mechanical probes. This practice can entail considerable complexity in connection with the structure often required for probe support. The use of laser velocimetry for the flowfield measurements in large wind tunnels is, therefore, far more desirable since it can be implemented with minimal mechanical complexity and with minimal modifications to the test section structure. A description is provided of a velocimeter which is intended for use in investigations which include V/STOL vehicle flowfield mapping for location and sizing of wakes and plumes, wing-loading distribution determination without the need for pressure taps, the aerodynamics of high-lift airfoils as well as rotating rotor blades, and vehicle wake studies. Use is made of a single-color dual-beam backscatter system which is capable of sensing two orthogonal components of velocity.

Reinath, M. S.↗

NASA NTRS1984

The inner edge of the plasma sheet and the diffuse aurora

Three dimensional measurements from the ISEE-1 low energy electron spectrometer are used to map the location of the inner edge of the plasma sheet and study the anisotropies in the electron distribution function associated with this boundary. Lower energy plasma sheet electrons have inner edges closer to the earth than higher energies with the separations at different energies being larger near dawn and after dusk than at midnight. Lowest energy inner edges are frequently located adjacent to the plasmapause in the dawn hemisphere but are often separated from it in the dusk hemisphere by a gap of at least several Re. The energy dispersion is minimal in the afternoon quadrant where the inner edge is near the magnetopause and frequently oscillating on a time scale of minutes. The location of the inner edge is probably determined primarily by the motion of electrons in the existing electric and magnetic fields rather than by strong diffusion as has sometimes been supposed. Previously announced in STAR as N83-32595

Fairfield, D. H.↗

NASA NTRS1987

Temporal observations of surface soil moisture using a passive microwave sensor

A series of 10 aircraft flights was conducted over agricultural fields to evaluate relationships between observed surface soil moisture and soil moisture predicted using passive microwave sensor observations. An a priori approach was used to predict values of surface soil moisture for three types of fields: tilled corn, no-till corn with soybean stubble, and idle fields with corn stubble. Acceptable predictions were obtained for the tilled corn fields, while poor results were obtained for the others. The source of error is suspected to be the density and orientation of the surface stubble layer; however, further research is needed to verify this explanation. Temporal comparisons between observed, microwave predicted, and soil water-simulated moisture values showed similar patterns for tilled well-drained fields. Divergences between the observed and simulated measurements were apparent on poorly drained fields. This result may be of value in locating and mapping hydrologic contributing areas.

Jackson, T. J.↗

NASA NTRS1989

Large-scale transport of a CO-enhanced air mass from Europe to the Middle East

On November 14, 1981, the shuttle-borne Measurement of Air Pollution from Satellites (MAPS) experiment observed a carbon monoxide (CO) enhanced air mass in the middle troposphere over the Middle East. The primary source of this polluted air was estimated by constructing adiabatic isentropic trajectories backwards from the MAPS measurement location over a 36 h period. The isentropic diagnostics indicate that CO-enhanced air was transported southeastward over the Mediterranean from an organized synoptic-scale weather regime, albeit of moderate intensity, influencing central Europe on November 12. Examination of the evolving synoptic scale vertical velocity and precipitation patterns during this period, in conjuction with Meteosat visible, infrared, and water vapor imagery, suggests that the presence of this disturbed weather system over Europe may have created upward transport of CO-enhanced air between the boundary-layer and midtropospheric levels, and subsequent entrainment in the large-scale northwesterly jet stream flow over Europe and the Mediterranean.

Connors, V. S.↗

NASA NTRS1990

Diurnal ocean surface layer model validation

The diurnal ocean surface layer (DOSL) model at the Fleet Numerical Oceanography Center forecasts the 24-hour change in a global sea surface temperatures (SST). Validating the DOSL model is a difficult task due to the huge areas involved and the lack of in situ measurements. Therefore, this report details the use of satellite infrared multichannel SST imagery to provide day and night SSTs that can be directly compared to DOSL products. This water-vapor-corrected imagery has the advantages of high thermal sensitivity (0.12 C), large synoptic coverage (nearly 3000 km across), and high spatial resolution that enables diurnal heating events to be readily located and mapped. Several case studies in the subtropical North Atlantic readily show that DOSL results during extreme heating periods agree very well with satellite-imagery-derived values in terms of the pattern of diurnal warming. The low wind and cloud-free conditions necessary for these events to occur lend themselves well to observation via infrared imagery. Thus, the normally cloud-limited aspects of satellite imagery do not come into play for these particular environmental conditions. The fact that the DOSL model does well in extreme events is beneficial from the standpoint that these cases can be associated with the destruction of the surface acoustic duct. This so-called afternoon effect happens as the afternoon warming of the mixed layer disrupts the sound channel and the propagation of acoustic energy.

Hawkins, Jeffrey D.↗

NASA NTRS1991

Mimas: Tectonic structure and geologic history

Mimas, the innermost of the major saturnian satellites, occupies an important place in comparative studies of icy satellites. It is the smallest icy satellite known to have a mostly spherical shape. Smaller icy objects like Hyperion and Puck are generally irregular in shape, while larger ones like Miranda and Enceladus are spherical. Thus Mimas is near the diameter where the combination of increasing surface gravity and internal heating begin to have a significant effect on global structure. The nature and extent of endogenic surface features provide important constraints on the interior structure and history of this transitional body. The major landforms on Mimas are impact craters. Mimas has one of the most heavily cratered surfaces in the solar system. The most prominent single feature on Mimas is Herschel, an unrelaxed complex crater 130 km in diameter. The only other recognized landforms on Mimas are tectonic grooves and lineaments. Groove locations were mapped by Schenk, but without analysis of groove structures or superposition relationships. Mimas' tectonic structures are remapped here in more detail than previously has been done, as part of a general study of tectonic features on icy satellites.

Croft, Steven K.↗

NASA NTRS1991

Alphonsus crater - Floor fracture and dark-mantle deposit distribution from new 3.0-cm radar images

The lunar crater Alphonsus is characterized by numerous fractures or graben, and by endogenic dark-halo craters. Existing maps of fractures from analysis of lunar photography may be biased by the east-west solar illumination. This paper presents new high-resolution, dual-polarization 3.0-cm wavelength radar images of Alphonsus with radar illumination from northerly directions, and uses these data to better map the locations of both the graben and a variety of dark-mantle deposits. The distribution of fractures, and several graben which cut the crater floor and central ridge, are cited as possible evidence for simultaneous, post-Imbrium uplift of both structures. Some of the endogenic dark halo deposits are more extensive in depolarized radar images than in photographs; these extensions are attributed in some cases to more distant emplacement of pyroclastic material, and in others to fortuitous connections with smoother, less cratered portions of the Alphonsus floor.

Zisk, Stanley H.↗

NASA NTRS1986

The 1984-1985 Antarctic Search for Meteorites (ANSMET) Field Program

The purpose of the 1984-1985 ANSMET (Antarctic Search for Meteorites) expedition was to recover meteorites from the Main, Near Western, Middle Western, and Far Western icefields in the Allan Hills area and to carry out a reconnaissance of other nearby blue icefields. A brief summary of the locations and maps visited are provided.

Sandford, Scott A.↗

NASA NTRS2000

BOREAS TGB-5 Fire History of Manitoba 1980 to 1991 in Raster Format

The BOReal Ecosystem-Atmosphere Study Trace Gas Biogeochemistry (BOREAS TGB-5) team collected several data sets related to the effects of fire on the exchange of trace gases between the surface and the atmosphere. This raster format data set covers the province of Manitoba between 1980 and 1991. The data were gridded into the Albers Equal-Area Conic (AEAC) projection from the original vector data. The original vector data were produced by Forestry Canada from hand-drawn boundaries of fires on photocopies of 1:250,000-scale maps. The locational accuracy of the data is considered fair to poor. When the locations of some fire boundaries were compared to Landsat TM images, they were found to be off by as much as a few kilometers. This problem should be kept in mind when using these data. The data are stored in binary, image format files.

Stocks, Brian J.↗

NASA NTRS2000

BOREAS TGB-5 Fire History of Manitoba 1980 to 1991 in Vector Format

The BOReal Ecosystem-Atmosphere Study Trace Gas Biogeochemistry (BOREAS TGB-5) team collected several data sets related to the effects of fire on the exchange of trace gases between the surface and the atmosphere. This vector format data set covers the province of Manitoba between 1980 and 1991 and was produced by Forestry Canada from hand-drawn boundaries of fires on photocopies of 1:250,000 scale maps. The locational accuracy of the data is considered fair to poor. When the locations of some fire boundaries were compared to Landsat TM images, they were found to be off by as much as a few kilometers.

Stocks, Brian J.↗

NASA NTRS2001

Recent Advances in Maya Studies Using Remotely Sensed Data

The Peten region of northern Guatemala is one of the last places on earth where major archeological sites remain to be discovered. It was in this region that the Maya civilization began, flourished, and abruptly disappeared. Remote sensing technology is helping to locate and map ancient Maya sites that are threatened today by accelerating deforestation and looting. Thematic Mapper and IKONOS satellite and airborne Star3i radar data, combined with Global Positioning System (GPS) technology, are successfully detecting ancient Maya features such as cities, roadways, canals, and water reservoirs. Satellite imagery is also being used to map the bajos, which are seasonally flooded swamps that cover over 40% of the land surface. The use of baJos for farming has been a source of debate within the professional community for many years. But the recent detection and verification of cultural features within the baJo system by our research team are providing conclusive evidence that the ancient Maya had adapted well to wetland environments from the earliest times and utilized them until the time of the Maya collapse. The combination of water management and baJo farming is an important resource for the future of the current inhabitants who are experiencing rapid population growth. Remote sensing imagery is also demonstrating that in the Preclassic period (600 BC- AD 250), the Maya had already achieved a high organizational level as evidenced by the construction of massive temples and an elaborate inter-connecting roadway system. Although they experienced several setbacks such as droughts and hurricanes, the Maya nevertheless managed the delicate forest ecosystem successfully for several centuries. However, around AD 800, something happened to the Maya to cause their rapid decline and eventual disappearance from the region. The evidence indicates that at this time there was increased climatic dryness, extensive deforestation, overpopulation, and widespread warfare. This raises a relevant question today-namely, how severe do internal stresses in a civilization have to become before relatively minor climate shifts can cause a widespread cultural collapse?

Sever, Tom↗