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At least 163 records · Page 9

Shape-dependent control of cell growth, differentiation, and apoptosis: switching between attractors in cell regulatory networks

Development of characteristic tissue patterns requires that individual cells be switched locally between different phenotypes or "fates;" while one cell may proliferate, its neighbors may differentiate or die. Recent studies have revealed that local switching between these different gene programs is controlled through interplay between soluble growth factors, insoluble extracellular matrix molecules, and mechanical forces which produce cell shape distortion. Although the precise molecular basis remains unknown, shape-dependent control of cell growth and function appears to be mediated by tension-dependent changes in the actin cytoskeleton. However, the question remains: how can a generalized physical stimulus, such as cell distortion, activate the same set of genes and signaling proteins that are triggered by molecules which bind to specific cell surface receptors. In this article, we use computer simulations based on dynamic Boolean networks to show that the different cell fates that a particular cell can exhibit may represent a preprogrammed set of common end programs or "attractors" which self-organize within the cell's regulatory networks. In this type of dynamic network model of information processing, generalized stimuli (e.g., mechanical forces) and specific molecular cues elicit signals which follow different trajectories, but eventually converge onto one of a small set of common end programs (growth, quiescence, differentiation, apoptosis, etc.). In other words, if cells use this type of information processing system, then control of cell function would involve selection of preexisting (latent) behavioral modes of the cell, rather than instruction by specific binding molecules. Importantly, the results of the computer simulation closely mimic experimental data obtained with living endothelial cells. The major implication of this finding is that current methods used for analysis of cell function that rely on characterization of linear signaling pathways or clusters of genes with common activity profiles may overlook the most critical features of cellular information processing which normally determine how signal specificity is established and maintained in living cells. Copyright 2000 Academic Press.

Review↗

Exploration of Geometric Noise Suppression in Transition Edge Sensors

We present noise data on Mo/Au superconducting transition edge sensors featuring the noise suppression geometry using normal metal bars transverse to the bias current. The effectiveness of the bars in far-infrared bolometers and x-ray microcalorimeters is evaluated. We have examined the effect of the resistivity of the superconducting bilayer on excess noise in bolometer devices. We have also studied the effect of bar density on energy resolution in x-ray devices. We address the question of whether the reduction is noise is necessarily coupled to a reduction in the effective transition sharpness. We propose a fabrication technique experiment to examine the dependence of alpha and noise suppression in similar transverse bar densities.

Chervenak, J. A.↗

RadLab: A Comprehensive Database and Graphical and Programming Interfaces for Biologically Relevant Space Radiation Data

RadLab, a new component of the NASA Open Science Data Repository (OSDR), is a platform built upon a database of radiation data relevant to space biology. RadLab provides visual and programmatic interfaces for interrogation of its database, as well as a submission process for inclusion of data from investigators. The RadLab application programming interface (API) implements a request syntax enabling users to retrieve data filtered by various combinations of parameters (detector type, location, direction, timespan, etc), which are delivered in machine-readable text formats, ready to be ingested by downstream analysis pipelines; while the graphical user interface (GUI) provides easy means to iteratively modify query parameters and incorporates a number of standard analyses and visualizations (time series plots, geospatial visualizations, detector comparison). Investigators from many countries, including US, Russia, Japan, Canada, the Czech Republic, Germany, Hungary, and Italy, have committed to provide data from their instruments located on the ISS; RadLab will also include data from other spacecraft in LEO (e.g., the Space Shuttle, the Mir space station), BLEO (e. g. BioSentinel, Mars Orbiter, among others), and on other celestial bodies (e. g. Chang’e 4, Curiosity). The first release of RadLab has been made available to the public. Once fully operational, RadLab will provide a comprehensive and ever-growing compendium of space radiation data, facilitating straightforward access to multiple types of readings and enabling space biology researchers to perform intercomparisons of detectors and to determine the radiation environment of research missions, both via programmatic retrieval of these data and via the graphical analysis toolkit; as well as a user-friendly submission portal for ingesting data from space agencies and research institutions. Radiation scientists will be able to use RadLab to gain a deeper understanding of the space radiation environment for future human space exploration. The RadLab Working Group has been formed to foster close collaborations among data contributors and users, to identify data sources, to put in place standards for data normalization, to guide the development of features of the analysis toolkit, to establish the use of RadLab in space radiation biology research, and eventually to provide a forum for discussing relevant research issues that can take advantage of RadLab's capabilities.

radiation↗

The Detection of 6.9 µm Emission Features in the Infrared Spectra of IRAS 04296+3429, IRAS 05341+0852, IRAS 22272+5435: Evidence for the Presence of Hn-PAHs in Post AGB Stars

Polycyclic aromatic hydrocarbons (PAHs) are generally believed to be ubiquitous in space and responsible for numerous telltale interstellar infrared emission bands. In Sandford et al., (2013), we suggested that polycyclic aromatic hydrocarbons with excess hydrogenation at their periphery (Hn-PAHs) may be an important subclass of these molecules in some astrophysical environments. These molecules are candidates to explain objects with anomalously large 3.4 μm features, which are presumed to be associated with the aliphatic C—H stretching vibrations of the excess hydrogen. In that work, we suggest that for Hn-PAHs to be a viable candidate as the source for this 3.4 μm feature, we must also expect to observe methylene scissoring modes at 6.9 μm. In this work, we continue to develop the Hn-PAH hypothesis with a focus on the 6.9 μm feature. We also present some new observations of three post-asymptotic giant branch (post- AGB) objects with abnormally large 3.4 μm features, IRAS 04296+3429, IRAS 05341+0852, IRAS 22272+5435, in addition to one post-AGB object with normal PAH emissions, IRAS 20000+3239. These observations were made using the FORCAST instrument in grism mode on the Stratospheric Observatory for Infrared Astronomy (SOFIA) aircraft (Adams et al. 2010) and demonstrate the presence of a 6.9 μm feature for the three objects with abnormally large 3.4 μm features and no detectable 6.9 μm feature for the normal PAH emitter. These results are consistent with the hypothesis that Hn-PAHs are a possible source of these infrared emission bands.

ISM↗

Magnetized Disk Winds in NGC 3783

We analyze a 900 kilosecond stacked Chandra/HETG (High-Energy Transmission Grating) spectrum of NGC 3783 in the context of magnetically driven accretion-disk wind models in an effort to provide tight constraints on the global conditions of the underlying absorbers. Motivated by the earlier measurements of its absorption measure distribution (AMD) indicating X-ray-absorbing ionic columns that decrease slowly with decreasing ionization parameter, we employ 2-dimension (2-D) magnetohydrodynamic (MHD) disk wind models to describe the global outflow. We compute its photoionization structure along with the wind kinematic properties, allowing us to further calculate in a self-consistent fashion the shapes of the major X-ray absorption lines. With the wind radial density profile determined by the AMD, the profiles of the ensemble of the observed absorption features are determined by the two global parameters of the MHD wind; i.e., disk inclination theta (sub obs) and wind density normalization n (sub o). Considering the most significant absorption features in the approximately 1.8-20 angstrom range, we show that the MHD wind is best described by n(r) approximately equal to 6.9 times 10 (sup 11) (r/r (sub o)) (sup - 1.15) cubic centimeters and theta (sub obs). We argue that winds launched by X-ray heating or radiation pressure, or even MHD winds but with steeper radial density profiles, are strongly disfavored by data. Considering the properties of Fe K-band absorption features (i.e., Fe XXV and Fe XXVI), while typically prominent in the active galactic nucleus X-ray spectra, they appear to be weak in NGC 3783. For the specific parameters of our model obtained by fitting the AMD and the rest of the absorption features, these features are found to be weak, in agreement with observations.

Fukumura, Keigo↗

Analysis of the heliospheric current sheet at Earth's orbit and model comparisons

IMP 8 magnetic field data for the first half of the year 1994, i.e., for about 6 solar rotations, are analyzed around regions of sector boundary crossings with the purpose of obtaining both gross- and fine-scale characteristics of the related heliospheric current sheets separating the observed sectors. For purposes of estimating the attitudes of the normals to the sector boundaries. analysis intervals (sometimes 30 min or more in length) allowing the field to fully complete an excursion of about 180 deg were used in the study, which consisted of variance analyses of the field within those intervals. The resulting boundary normals were analyzed and compared to known (generic) models of projected heliospheric current sheets and to a coronal field model for the same time period. One of the most outstanding features of the resulting ensemble of estimated boundary normals for this period is that they strongly prefer low inclinations, indicating that the observations do not support a 1 AU model that predicts a current sheet whose surface is approximately parallel with the sun's equator, such as the 'sombrero' model. They instead support a model that predicts a relatively high inclination current sheet at 1 AU. Also the normals assume a surprisingly large range of longitudes, somewhat favoring those consistent with a Parker model (45 deg and 225 deg) and/or radial alignment (0 deg and 180 deg). These boundary structures, as defined, are shown typically to be as broad as several hundred proton gyroradii, but having embedded within them very thin structures associated with stronger currents. Such thin structures have normals usually differing markedly from the gross boundary. For some crossings there are indications of a wave-like structure in the current sheet as it passed the spacecraft.

Lepping, R. P.↗

QED: A Powerful Query Equivalence Decider for SQL

Checking query equivalence is of great significance in database systems. Prior work in automated query equivalence checking sets the first steps in formally modeling and reasoning about query optimization rules, but only supports a limited number of query features. In this paper, we present Qed, a new framework for query equivalence checking based on bag semantics. Qed uses a new formalism called Q-expressions that models queries using different normal forms for efficient equivalence checking, and models features such as integrity constraints and NULLs in a principled way unlike prior work. Our formalism also allows us to define a new query fragment that encompasses many real-world queries with a complete equivalence checking algorithm, assuming a complete first-order theory solver. Empirically, Qed can verify 299 out of 444 query pairs extracted from the Calcite framework and 979 out of 1287 query pairs extracted from CockroachDB, which is more than 2× the number of cases proven by prior state-of-the-art solver.

Computer Science↗

Phobos - Photometry and origin of dark markings on crater floors

Viking Orbiter 1 close encounter pictures of Phobos reveal unusual dark patches on the floors of many craters. Photometry of these features indicates that they have a similar normal reflectance but a phase coefficient 30% larger than the average surface. These facts suggest that the 'dark' material has a similar composition but a much rougher texture than the average surface of Phobos. By analogy with terrestrial impact, explosion and laboratory craters, the dark patches are interpreted as impact generated melt pools which remain visible on Phobos due to the low value of g and consequent small amount of fallback ejecta and slumping. Since blanketing by ejecta from subsequent impacts and micrometeoroid erosion should eventually obliterate such features, they should be more conspicuous in the fresher craters. Similar features should be visible on small asteroids and other low g bodies. However, they are not prominent on the surface of Deimos - possibly because most of the craters imaged at high resolution on the outer satellite appear to have been blanketed by several meters of fine-grained material.

Goguen, J.↗

Parameterization of Features on Spherical Surfaces

NASA’s Planetary Systems Laboratory (PSL) at the Goddard Spaceflight Center in Greenbelt, Maryland is tasked with the study of solar system objects. This work is frequently based on analysis of imagery from visiting spacecraft, orbiting telescopes, and ground-based sensors. A consequence of this mission is the need to characterize features on the spherical surface of planets and moons, such characterization including the overall area of the feature, its center, its moments of inertia, its perimeter, its compactness, its major axis, its bounding box, its aspect ratio and its North-South orientation. Accurate assessment of these measures from a “flat” two-dimensional image is a challenge, since the scale of distance observed at the center of a spherical object distorts in any direction towards the horizon. PSL has developed a technique to guarantee accurate and automated measurement at any point on the visible surface, by overlaying an imaginary grid of equal-area cells onto the two-dimensional image of the sphere. The technique is named Grid-Oriented Normalization for Analysis of Spherical Areas (GONASA). This paper discusses the construction of the normalization grid and describes specific algorithms for feature parameterization. The algorithms are implemented in an accompanying Excel spreadsheet, both for clarity and ease of adoption, and to emphasize their aptness for automation. Finally, a concrete use case is offered where the GONASA grid and algorithms are used to characterize methane clouds on the Saturnian moon Titan.

Planetary science↗

Autogeneous Friction Stir Weld Lack-of-Penetration Defect Detection and Sizing Using Directional Conductivity Measurements with MWM Eddy Current Sensor

Al 2195-T8 plate specimens containing Friction Stir Welds (FSW), provided by Lockheed Martin, were inspected using directional conductivity measurements with the MWM sensor. Sensitivity to lack-of-penetration (LOP) defect size has been demonstrated. The feature used to determine defect size was the normalized longitudinal component of the MWM conductivity measurements. This directional conductivity component was insensitive to the presence of a discrete crack. This permitted correlation of MWM conductivity measurements with the LOP defect size as changes in conductivity were apparently associated with metallurgical features within the first 0.020 in. of the LOP defect zone. Transverse directional conductivity measurements also provided an indication of the presence of discrete cracks. Continued efforts are focussed on inspection of a larger set of welded panels and further refinement of LOP characterization tools.

Goldfine, Neil↗

An investigation of the 1.9 A feature in solar-flare X-ray spectra

The 1.9 A feature, observed in the X-ray spectra of three solar flares with the Columbia University and Lockheed Palo Alto Research Laboratory spectrometers on the OSO 8 satellite, is shown to be due to a blend of 1s-2p transitions in a range of Fe ions. In the temperature range 9-16 x -10 to the 6th K, the feature has a mean wavelength of 1.900 + or - 0.009 A and is 0.04 A wider than a single line, indicating that the main contributors are Fe XIX-Fe XXII. Most of the emission originates from the dielectronic recombination process, and when inner-shell excitation is included together with normal collisional excitation, the observed intensity of the feature can be accounted for adequately. For these events, if the electron density is below approximately 10 to the 12th/cu cm, deviations from ionization equilibrium will be significant for ions more highly ionized than Fe XXI.

Parkinson, J. H.↗

Electronic, Hand-Held, Wireless Text-And-Graphics Viewer

Proposed electronic, hand-held, wireless viewer presents written material to reader in way that closely resembles that of paper reading material. Viewer presents text and graphics like those normally found in books, newspapers, and magazines. Its hand-held and wireless features enable it to be used in positions and areas where books and magazines are normally used. Device consists primarily of two parts: the receiver/information store and viewing screen.

Palumbo, Daniel L.↗

Development, feasibility, and uncertainty of radioactive 22 Na tracer dilution and gamma spectroscopy for mass determination of molten salt for pyroprocessing spent nuclear fuels

Accurate knowledge of the total mass of molten salts both for pyroprocessing spent nuclear fuels and for molten salt reactors is necessary for safeguards purposes. However, it is challenging to know or measure the total mass of molten salt due to the complicated shapes as well as the compositional—and thus density—changes that occur over time during operation. Here, we investigated radioactive tracer dilution (RTD) as a potential safeguards technique for application to the total mass measurement of LiCl–KCl–UCl 3 salt used for uranium electrorefining, with a focus on the feasibility, uncertainty, and fission product effect of RTD for salt mass measurement. To this end, experimental-scale RTD tests (600–700 g of total mass) were initially carried out by adding 22 Na tracer salt into LiCl–KCl salt containing 0, 5, and 28wt% radioactive salts from an electrorefiner (ER) for refining uranium. Upon the completion of the experimental-scale RTD tests, we performed a scale-up RTD test by directly adding 22 Na tracer salts to the ER, which uses about 12 kg of LiCl–KCl–UCl 3 salt during normal operation. This paper reports the main features of RTD for total mass measurement of molten salt and summarizes the results of the experimental-scale and scale-up RTD tests.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Two-phase operation of a Terry steam turbine using air and water mixtures as working fluids

Terry steam turbines are employed in the safety systems of many nuclear Boiling Water Reactors to drive pumps and provide cooling water to the nuclear reactor core. While the turbine efficiency is low, the more important feature is high reliability under off-normal conditions. An important aspect of reliability is the ability to function with two-phase steam-water injection into the turbine, as most likely occurred in the Fukushima Dai-ichi nuclear accidents. This study investigates the characteristics of a Terry turbine during air-water injection with gas mass fractions ranging from 1 (dry gas) to 0.05 (wet gas), to better understand the Terry turbine’s true operational capabilities and provide justification for extended Terry turbine use for reactor safety. Other parameters investigated are the inlet pressure, the exhaust backpressure and the turbine’s rotational speed. The turbine performance is presented in terms of dynamometer loading and pump performance change as functions of the gas mass fraction.

42 ENGINEERING↗

Lattice-scale variations in viscosity are correlated with solution structure at mineral-water interfaces

At solid-liquid interfaces, the viscosity increases markedly from the bulk due to the collective interactions of ions and water molecules, influencing phenomena relevant to nanofluidics, colloidal dynamics, and electrochemistry. Here, in this study, we investigated dissipative forces at the boehmite-water interface using 3D atomic force microscopy. We observed an increase in interfacial solution viscosity, η, by 10-100-fold as the nanoprobe approached the surface in normal direction, with up to four oscillatory features showing average peaks of η/η bulk = 44-71. Moreover, the viscosity showed sub-nanometer variations within 0.5 nm from the interface, templated by the underlying crystal lattice and correlated with the interfacial solution structure. Beyond a near-wall region of approximately 1.2 nm, the dissipative response was comparable to that in bulk solution. Molecular dynamics simulations, along with statistical mechanical analyses, provided details on hydrodynamic structures near the interface. Specifically, the lattice-dependent dissipative responses are correlated with extensive hydrogen bonding by interfacial water molecules, which increased friction, particularly along the [001] direction. These results demonstrate how solution viscosity at mineral-water interfaces is anisotropic and correlated with the local solution structure, providing insights into the dynamics of nanocrystal attachment.

Viscosity↗

Base excision repair and double strand break repair cooperate to modulate the formation of unrepaired double strand breaks in mouse brain

Abstract We lack the fundamental information needed to understand how DNA damage in the brain is generated and how it is controlled over a lifetime in the absence of replication check points. To address these questions, here, we integrate cell-type and region-specific features of DNA repair activity in the normal brain. The brain has the same repair proteins as other tissues, but normal, canonical repair activity is unequal and is characterized by high base excision repair (BER) and low double strand break repair (DSBR). The natural imbalance creates conditions where single strand breaks (SSBs) can convert to double strand breaks (DSBs) and reversibly switch between states in response to oxidation both in vivo and in vitro. Our data suggest that, in a normal background of repair, SSBs and DSBs are in an equilibrium which is pushed or pulled by metabolic state. Interconversion of SSB to DSBs provides a physiological check point, which would allow the formation of unrepaired DSBs for productive functions, but would also restrict them from exceeding tolerable limits.

Science & Technology - Other Topics↗

Improved quantitation of SIMS depth profile measurements of niobium via sample holder design improvements and characterization of grain orientation effects

The importance of SIMS analyses for “N-doped” impurity alloyed niobium and other surface-alloyed materials continues to increase. A major hurdle is the uncertainty of instrument calibration due to changes in sample height either from sample surface topography or from the sample holder itself. The CAMECA sample holder design allows for many types of samples to be analyzed. However, a drawback is that the holder faceplate can bend, contributing an uncertainty in the relative sensitivity factor (RSF) used to quantify the SIMS results. Here, we describe an improved sample holder having a reinforced faceplate, which prevents deflection and reduces uncertainty. Simulations show that the new design significantly reduces deflection from 10 μm to 5 nm. Sample measurements show a reduction of RSF uncertainty from this source from 4.1% to 0.95%. Grain orientation has long been suspected to affect RSF measurement as well. A bicrystal implant standard, consisting of randomly oriented and [001] grains, was successively rotated 15° between analyses. It was observed that 20% of the analyses performed on the randomly oriented grain exhibited anomalously high RSF values as well as slow sputter rates. These features were associated with the changing grain normal orientation with respect to the primary Cs + beam. The grain orientation associated with the rise in RSF was simulated and determined to be the [101] crystallographic plane, thus indicating that ion channeling was responsible for the significantly increased RSF. Focused ion beam analysis confirmed slower sputter rates for the cardinal crystallographic orientations, indicating that ion channeling occurred for each.

43 PARTICLE ACCELERATORS↗

Unsupervised Detection of SOC Spoofing in OCPP 2.0.1 EV Charging Communication Protocol Using One-Class SVM

The electric vehicles (EVs) market keeps growing globally; thus, it is critical to secure the EV charging communication protocols in order to guarantee reliable and fair charging operations among the customers. The Open Charge Point Protocol (OCPP) 2.0.1 supports the communication between the Electric Vehicle Supply Equipment (EVSE) and Charging Station Management Systems (CSMSs); therefore, it becomes vulnerable to several types of attacks, which aim to jeopardize smart charging, billing, and energy management. Specifically, OCPP 2.0.1 allows the self-reporting of the State of Charge (SOC) values, which makes it vulnerable to spoofing-based cyberattacks, which target manipulating the scheduling priorities, distorting the load forecasts, and extending the charging sessions in an unfair manner. In this paper, we try to address this type of attack by providing a comprehensive analysis of the SOC spoofing attacks and introducing a novel unsupervised detection framework based on the One-Class Support Vector Machine (OCSVM) algorithm. Specifically, two types of attack scenarios are analyzed (i.e., priority manipulation and session extension) by deriving engineered features that capture the nonlinear relationships under normal charging behavior. Detailed simulation-based results are derived by utilizing the DESL-EPFL Level 3 EV charging dataset. Our results demonstrate high F1-score and recall in identifying spoofed SOC values and that the proposed OCSVM model demonstrates superior performance compared to alternative clustering and deep-learning based detectors.

EV charging↗