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At least 163 records · Page 9

Crystallized N-terminal domain of influenza virus matrix protein M1 and method of determining and using same

The matrix protein, M1, of influenza virus strain A/PR/8/34 has been purified from virions and crystallized. The crystals consist of a stable fragment (18 Kd) of the M1 protein. X-ray diffraction studies indicated that the crystals have a space group of P3.sub.t 21 or P3.sub.2 21. Vm calculations showed that there are two monomers in an asymmetric unit. A crystallized N-terminal domain of M1, wherein the N-terminal domain of M1 is crystallized such that the three dimensional structure of the crystallized N-terminal domain of M1 can be determined to a resolution of about 2.1 .ANG. or better, and wherein the three dimensional structure of the uncrystallized N-terminal domain of M1 cannot be determined to a resolution of about 2.1 .ANG. or better. A method of purifying M1 and a method of crystallizing M1. A method of using the three-dimensional crystal structure of M1 to screen for antiviral, influenza virus treating or preventing compounds. A method of using the three-dimensional crystal structure of M1 to screen for improved binding to or inhibition of influenza virus M1. The use of the three-dimensional crystal structure of the M1 protein of influenza virus in the manufacture of an inhibitor of influenza virus M1. The use of the three-dimensional crystal structure of the M1 protein of influenza virus in the screening of candidates for inhibition of influenza virus M1.

Luo, Ming↗

Optimization Testbed Cometboards Extended into Stochastic Domain

COMparative Evaluation Testbed of Optimization and Analysis Routines for the Design of Structures (CometBoards) is a multidisciplinary design optimization software. It was originally developed for deterministic calculation. It has now been extended into the stochastic domain for structural design problems. For deterministic problems, CometBoards is introduced through its subproblem solution strategy as well as the approximation concept in optimization. In the stochastic domain, a design is formulated as a function of the risk or reliability. Optimum solution including the weight of a structure, is also obtained as a function of reliability. Weight versus reliability traced out an inverted-S-shaped graph. The center of the graph corresponded to 50 percent probability of success, or one failure in two samples. A heavy design with weight approaching infinity could be produced for a near-zero rate of failure that corresponded to unity for reliability. Weight can be reduced to a small value for the most failure-prone design with a compromised reliability approaching zero. The stochastic design optimization (SDO) capability for an industrial problem was obtained by combining three codes: MSC/Nastran code was the deterministic analysis tool, fast probabilistic integrator, or the FPI module of the NESSUS software, was the probabilistic calculator, and CometBoards became the optimizer. The SDO capability requires a finite element structural model, a material model, a load model, and a design model. The stochastic optimization concept is illustrated considering an academic example and a real-life airframe component made of metallic and composite materials.

Patnaik, Surya N.↗

Neuregulin: First Steps Towards a Structure

Neuregulins are growth factor domain proteins with diverse bioactivities, such as cell proliferation, receptor binding, and differentiation. Neureguh- 1 binds to two members of the ErbB class I tyrosine kinase receptors, ErbB3 and ErbB4. A number of human cancers overexpress the ErbB receptors, and neuregulin can modulate the growth of certain cancer types. Neuregulin-1 has been shown to promote the migration of invasive gliomas of the central nervous system. Neuregulin has also been implicated in schizophrenia, multiple sclerosis and abortive cardiac abnormalities. The full function of neuregulin-1 is not known. In this study we are inserting a cDNA clone obtained from American Type Culture Collection into E.coli expression vectors to express neuregulin- 1 protein. Metal chelate affinity chromatography is used for recombinant protein purification. Crystallization screening will proceed for X-ray diffraction studies following expression, optimization, and protein purification. In spite of medical and scholarly interest in the neuregulins, there are currently no high-resolution structures available for these proteins. Here we present the first steps toward attaining a high-resolution structure of neuregulin- 1, which will help enable us to better understand its function

Ferree, D. S.↗

Experiments in identification and control of flexible-link manipulators

A report is presented on an ongoing effort for end-point position control of flexible-link manipulators under realistic conditions in laboratory setups consisting of one- and two-link manipulators. The authors treat modeling, identification, and control of flexible-link manipulators that are required to carry payloads, possibly unknown and varying, while undergoing disturbance effects from the environments and the workspace. The various identification and control techniques being investigated are summarized, with emphasis on the ability of the controller to adjust to changes in dynamics, payload, and working environment. It is found that time-domain methods offer identified model structures that are readily available for control design, whereas frequency-domain methods, particularly the time-varying transfer function estimation approach developed for this application, are more desirable when rapid controller tuning is required.

Yurkovich, Stephen↗

Data dependent systems methodology for lumped mass modeling of structures

Limitations of the frequency domain methods in analyzing structura1 vibrations has created an awareness of the comparative merits of the time domain methods. Although time domain methods would be ideal for modeling large precisions space systems, the popular methods based on fitting theoretical response to actual data by least squares are too sensitive to noise and require too much data to be suitable for orbiting space crafts. This paper briefly reviews the theory and illustrative applications of a time domain methodology called Data Dependent Systems (DDS) that eliminates these limitations. Simulation results are presented to demonstrate a better than 4-place accuracy in the identifications of all system parameters, both modal (frequencies, damping ratios, and mode shapes) and physical (mass, stiffness, and damping matrices).

Pandit, Sudhakar M.↗

Lunar plagioclase - A mineralogical study.

Mineralogical properties of calcic plagioclase have been analyzed using U-stage, microprobe, X-ray precession cameras, and a 650-kV electron microscope. The orientation of the optical indicatrix in lunar and eucrite anorthites is described with Euler angles. All crystals, except one, show strong b- and diffuse c-reflections in precession photographs. In 10017, b-split-reflections have been found. Dark-field electron micrographs of 14310 anorthite show both large and small b-antiphase domains, and an exsolution structure in crystals that display b-split reflections in the diffractogram. Diffuseness of c-reflections in X-ray photographs and the inability to resolve c-domains in electron micrographs in An 94 anorthite of 14310 indicate relatively rapid cooling of this rock compared to plutonic rocks.

Wenk, H.-R.↗

Laser Patterning Assisted Devitrification and Domain Engineering of Amorphous and Nanocrystalline Alloys

We have investigated laser-patterning and devitrification as a novel method to realize emergent properties in modified regions at the ribbon surface consisting of periodic localized laser spots thermally treated under rapid heating and cooling conditions. Fe-based amorphous ribbons were annealed for systematically varied laser power. Extremely high heating and cooling rates on the order of 10(exp 8)-10(exp 10)K/s have been estimated by finite element analysis simulations. Observations suggest surface melting followed by rapid solidification fast enough to quench and form an amorphous structure upon cooling. Diffusion of heat occurs from the laser irradiated surface region so that a finite volume of material surrounding this region rises in temperature above the crystallization temperature relevant for conventional isothermal annealing experiments. The underlying mechanism of laser annealing and consequences of heat transients involved are discussed in terms of impacts upon micro/nanostructure, residual stresses, and magnetic domain structure surrounding the laser irradiated region. The study illustrates the potential to exploit spatially optimized phase transformations in a scalable manufacturing process of amorphous and nanocrystalline alloys to locally access otherwise inaccessible extreme heating and cooling rates.

Amorphous ribbons↗

Integrated Process-Structure-Property Simulations for Additive Manufacturing Using the Open-Source Materialite Package

The microstructure and properties of additively manufactured (AM) metals are strongly dependent on process conditions. Therefore, process-structure-property (PSP) simulations are a useful tool for exploring process parameter space, studying process variations, and quantifying uncertainty in material properties. However, integrating process-structure and structure-property simulations often involves connecting multiple software packages. Each package may use unique data structures and require substantial domain knowledge. This presentation demonstrates PSP simulation capabilities of Materialite, an open-source package developed at NASA Langley Research Center. Materialite simplifies model linkages by using a common data structure and model interface, enabling straightforward simulation across a PSP model chain. Physics-based models, including kinetic Monte Carlo and crystal plasticity, are implemented within the package. The model interface is also intended to simplify implementation of new models and enable integration with external simulation tools. Example use cases include uncertainty quantification with PSP models and GPU-accelerated powder bed fusion AM process models.

additive manufacturing↗

ERTS-1 imagery as an aid to the definition of the geotectonic domains of the southern African crystalline shield

Portions of two geotectonic environments in South Africa have been studied on ERTS-1 imagery. It was found that the broad synoptic view provided by this imagery is ideally suited to a study of the diagnostic macro-structures, and that the different geotectonic styles are clearly recorded. ERTS-1 imagery thus allows a more accurate definition than exists at present of the contact zones and internal structures of the two domains. The importance of this investigation as an aid to gaining on insight into the relevance of plate tectonics in Precambrian times is briefly discussed.

Viljoen, M. J.↗

Robust controller synthesis for large flexible space structures

The application of a multivariable frequency domain method for the attitude control and vibration suppression of large flexible space structures is discussed. Results of application of the linear-quadratic-Gaussian/loop transfer recovery method to the cases of a hop/column antenna, a wrap-rib antenna, and the Spacecraft Control Laboratory Experiment are presented. Controller order reduction is implemented using the balanced realization method, a Hankel-norm-based method, and a method based on stable factorization.

Joshi, S. M.↗

A case study of GWE satellite data impact on GLA assimilation analyses of two ocean cyclones

The effects of the Global Weather Experiment (GWE) data obtained on January 18-20, 1979 on Goddard Laboratory for Atmospheres assimilation analyses of simultaneous cyclones in the western Pacific and Atlantic oceans are examined. The ability of satellite data within assimilation models to determine the baroclinic structures of developing extratropical cyclones is evaluated. The impact of the satellite data on the amplitude and phase of the temperature structure within the storm domain, potential energy, and baroclinic growth rate is studied. The GWE data are compared with Data Systems Test results. It is noted that it is necessary to characterize satellite effects on the baroclinic structure of cyclone waves which degrade numerical weather predictions of cyclogenesis.

Gallimore, R. G.↗

Phase transformations in 40-60-GPa shocked gneisses from the Haughton Crater (Canada): An Analytical Transmission Electron Microscopy (ATEM) study

In order to better understand phase transformations, chemical migration, and isotopic disequilibrium in highly shocked rocks, we have performed a microprobe and an ATEM study on gneisses shocked up to 60 GPa from the Haughton Crater. This study reveals the following chemical and structural characteristics: (1) SiO2 dominant areas are formed by a mixture of pure SiO2 polycrystalline quartz identified by electron diffraction pattern and chemical analysis and a silica-rich amorphous phase containing minor amounts of aluminium, potassium, and iron; (2) Areas with biotitelike composition are formed by less than 200-nm grains of iron-rich spinels embedded in a silica-rich amorphous phase that is very similar to the one described above; (3) Layers with feldsparlike composition are constituted by 100-200-nm-sized alumina-rich grains (the indexation of the crystalline structure is under progress) and the silica-rich amorphous phase; (4) Zones characterized by the unusual Al/Si ratio close to 1 are formed by spinel grains (200-nm-sized) embedded in the same silica-rich amorphous phase; and (5) The fracturated sillimanites contain domains with a lamellar structure, defined by the intercalation of 100-nm-wide lamellae of mullite crystals and of a silica-rich amorphous phase. These mullite crystals preserved the crystallographical orientation of the preshock sillimanite. All compositional domains, identified at the microprobe scale, can thus be explained by a mixture in different proportion between the following phases: (1) a silica-rich amorphous phase, with minor Al and K; (2) quartz crystals; (3) spinel crystals and alumina-rich crystals; (4) sillimanite; and (5) mullite. Such mixtures of amorphous phases and crystals in different proportions explain disturbed isotope systems in these rocks and chemical heterogeneities observed on the microprobe.

Martinez, I.↗

The application of the Wigner Distribution to the identification of structure-borne noise components

In this paper it is shown that time-frequency analysis of a transient structural response may be used to identify the wave types carrying significant energy through a structure. The identification of various wave types is possible since each is characterized by its own dispersion relation, with the result that each wave type may be associated with characteristic features in the time-frequency domain representation of a structural response. In the work described here, the Wigner Distribution has been used to obtain time-frequency representations of structural transient responses. Practical aspects of the calculation of the Wigner Distribution are discussed briefly, and examples of its application to the analysis of transient structural responses are given. Additionally, time-frequency filtering techniques are described that can be used both to detect the presence of and to quantify the energy carried by both non-dispersive and dispersive waves.

Wahl, T. J.↗

Evaluation of Aircraft Platforms for SOFIA by Computational Fluid Dynamics

The selection of an airborne platform for the Stratospheric Observatory for Infrared Astronomy (SOFIA) is based not only on economic cost, but technical criteria, as well. Technical issues include aircraft fatigue, resonant characteristics of the cavity-port shear layer, aircraft stability, the drag penalty of the open telescope bay, and telescope performance. Recently, two versions of the Boeing 747 aircraft, viz., the -SP and -200 configurations, were evaluated by computational fluid dynamics (CFD) for their suitability as SOFIA platforms. In each configuration the telescope was mounted behind the wings in an open bay with nearly circular aperture. The geometry of the cavity, cavity aperture, and telescope was identical in both platforms. The aperture was located on the port side of the aircraft and the elevation angle of the telescope, measured with respect to the vertical axis, was 500. The unsteady, viscous, three-dimensional, aerodynamic and acoustic flow fields in the vicinity of SOFIA were simulated by an implicit, finite-difference Navier-Stokes flow solver (OVERFLOW) on a Chimera, overset grid system. The computational domain was discretized by structured grids. Computations were performed at wind-tunnel and flight Reynolds numbers corresponding to one free-stream flow condition (M = 0.85, angle of attack alpha = 2.50, and sideslip angle beta = 0 degrees). The computational domains consisted of twenty-nine(29) overset grids in the wind-tunnel simulations and forty-five(45) grids in the simulations run at cruise flight conditions. The maximum number of grid points in the simulations was approximately 4 x 10(exp 6). Issues considered in the evaluation study included analysis of the unsteady flow field in the cavity, the influence of the cavity on the flow across empennage surfaces, the drag penalty caused by the open telescope bay, and the noise radiating from cavity surfaces and the cavity-port shear layer. Wind-tunnel data were also available to compare to the CFD results; the data permitted an assessment of CFD as a design tool for the SOFIA program.

Klotz, S. P.↗

T-infinity: The Dependency Inversion Principle for Rapid and Sustainable Multidisciplinary Software Development

The CFD Vision 2030 Study recommends that, “NASA should develop and maintain an integrated simulation and software development infrastructure to enable rapid CFD technology maturation.... [S]oftware standards and interfaces must be emphasized and supported whenever possible, and open source models for noncritical technology components should be adopted.” The current paper presents an approach to an open source development architecture, named T-infinity, for accelerated research in CFD leveraging the Dependency Inversion Principle to realize plugins that communicate through collections of functions without exposing internal data structures. Steady state flow visualization, mesh adaptation, fluid-structure interaction, and overset domain capabilities are demonstrated through compositions of plugins via standardized abstract interfaces without the need for source code dependencies between disciplines. Plugins interact through abstract interfaces thereby avoiding N 2 direct code-to-code data structure coupling where N is the number of codes. This plugin architecture enhances sustainable development by controlling the interaction between components to limit software complexity growth. The use of T-infinity abstract interfaces enables multidisciplinary application developers to leverage legacy applications alongside newly-developed capabilities. While rein, a description of interface details is deferred until the are more thoroughly tested and can be closed to modification.

O'Connell, Matthew D.↗

The macromolecular aromatic domain in suberized tissue: a changing paradigm

As a structural feature of specialized cell walls, suberization remains an enigma, despite its obvious importance both during normal growth and development and as a stress response in plants. While it is clear that suberized tissues contain both polyaromatic and polyaliphatic domains, and that each of these has its own unique characteristics, whether there is a contiguous macromolecule that can be called suberin is an open question. From a structural perspective, the aromatic domain is unique and distinct from lignin, and is apparently comprised primarily of (poly)hydroxycinnamates, such as amides (e.g., feruloyltyramine). The aliphatic domain is also unique, being quite distinct from cutin in terms of both its chemical composition and cellular location. In the present paper, histochemical, structural and biochemical data, particularly, regarding the polyaromatic domain of suberized tissues, are critically reviewed. A revised description of the polyaromatic domain of suberized tissues, based on the consensus that is emerging from the current data, is presented and especially includes a spatially distinct (poly)hydroxycinnamoyl-containing macromolecule.

Non-NASA Center↗

A domain method for shape design sensitivity analysis of built-up structures

A numerical method of obtaining accurate shape design sensitivity information for built-up structures is developed and demonstrated through examples. The method utilizes the basic character of the finite element method that gives accurate information not on the boundary, but in the domain. The method is shown to drastically simplify the derivation of shape design sensitivity formulas for complex built-up structures.

Choi, Kyung K.↗

Theoretical models of single-element LTSA antenna elements

The spectral domain computations for slotline guide wavelength and characteristic impedance provide the basic parameters that are need to calculate the radiation pattern of an Linearly Tapered Slot Antenna (LTSA) by using the half-plane Green's function and a stepped approximation to the LTSA structure. However, the spectral domain computations are somewhat time consuming and not suitable for computer aided design application. Therefore, the results of several computation were fitted by formulas that are readily evaluated on a calculator or computer. Antenna measurements were continued, and an attempt was made to predict the truncation effect by three different methods.

Source record↗