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At least 163 records · Page 9

Clusters of DNA induced by ionizing radiation: formation of short DNA fragments. I. Theoretical modeling

We have developed a general theoretical model for the interaction of ionizing radiation with chromatin. Chromatin is modeled as a 30-nm-diameter solenoidal fiber comprised of 20 turns of nucleosomes, 6 nucleosomes per turn. Charged-particle tracks are modeled by partitioning the energy deposition between primary track core, resulting from glancing collisions with 100 eV or less per event, and delta rays due to knock-on collisions involving energy transfers >100 eV. A Monte Carlo simulation incorporates damages due to the following molecular mechanisms: (1) ionization of water molecules leading to the formation of OH, H, eaq, etc.; (2) OH attack on sugar molecules leading to strand breaks: (3) OH attack on bases; (4) direct ionization of the sugar molecules leading to strand breaks; (5) direct ionization of the bases. Our calculations predict significant clustering of damage both locally, over regions up to 40 bp and over regions extending to several kilobase pairs. A characteristic feature of the regional damage predicted by our model is the production of short fragments of DNA associated with multiple nearby strand breaks. The shapes of the spectra of DNA fragment lengths depend on the symmetries or approximate symmetries of the chromatin structure. Such fragments have subsequently been detected experimentally and are reported in an accompanying paper (B. Rydberg, Radiat, Res. 145, 200-209, 1996) after exposure to both high- and low-LET radiation. The overall measured yields agree well quantitatively with the theoretical predictions. Our theoretical results predict the existence of a strong peak at about 85 bp, which represents the revolution period about the nucleosome. Other peaks at multiples of about 1,000 bp correspond to the periodicity of the particular solenoid model of chromatin used in these calculations. Theoretical results in combination with experimental data on fragmentation spectra may help determine the consensus or average structure of the chromatin fibers in mammalian DNA.

Non-NASA Center↗

The completed SDSS-IV extended Baryon Oscillation Spectroscopic Survey: BAO and RSD measurements from the anisotropic power spectrum of the quasar sample between redshift 0.8 and 2.2

ABSTRACT We measure the clustering of quasars of the final data release (DR16) of eBOSS. The sample contains $343\, 708$ quasars between redshifts 0.8 ≤ z ≤ 2.2 over $4699\, \mathrm{deg}^2$. We calculate the Legendre multipoles (0,2,4) of the anisotropic power spectrum and perform a BAO and a Full-Shape (FS) analysis at the effective redshift zeff = 1.480. The errors include systematic errors that amount to 1/3 of the statistical error. The systematic errors comprise a modelling part studied using a blind N-body mock challenge and observational effects studied with approximate mocks to account for various types of redshift smearing and fibre collisions. For the BAO analysis, we measure the transverse comoving distance DM(zeff)/rdrag = 30.60 ± 0.90 and the Hubble distance DH(zeff)/rdrag = 13.34 ± 0.60. This agrees with the configuration space analysis, and the consensus yields: DM(zeff)/rdrag = 30.69 ± 0.80 and DH(zeff)/rdrag = 13.26 ± 0.55. In the FS analysis, we fit the power spectrum using a model based on Regularised Perturbation Theory, which includes redshift space distortions and the Alcock–Paczynski effect. The results are DM(zeff)/rdrag = 30.68 ± 0.90 and DH(zeff)/rdrag = 13.52 ± 0.51 and we constrain the linear growth rate of structure f(zeff)σ8(zeff) = 0.476 ± 0.047. Our results agree with the configuration space analysis. The consensus analysis of the eBOSS quasar sample yields: DM(zeff)/rdrag = 30.21 ± 0.79, DH(zeff)/rdrag = 3.23 ± 0.47, and f(zeff)σ8(zeff) = 0.462 ± 0.045 and is consistent with a flat ΛCDM cosmological model using Planck results.

Neveux, Richard↗

Decentralized Observer with a Consensus Filter for Distributed Discrete-Time Linear Systems

This paper presents a decentralized observer with a consensus filter for the state observation of a discrete-time linear distributed systems. In this setup, each agent in the distributed system has an observer with a model of the plant that utilizes the set of locally available measurements, which may not make the full plant state detectable. This lack of detectability is overcome by utilizing a consensus filter that blends the state estimate of each agent with its neighbors' estimates. We assume that the communication graph is connected for all times as well as the sensing graph. It is proven that the state estimates of the proposed observer asymptotically converge to the actual plant states under arbitrarily changing, but connected, communication and sensing topologies. As a byproduct of this research, we also obtained a result on the location of eigenvalues, the spectrum, of the Laplacian for a family of graphs with self-loops.

embedded consensus↗

Explaining the Mid-Latitude Ice Deposits with a General Circulation Model

Though plausible explanations for the high latitude subsurface hydrogen features on Mars have been put forth, there still lacks a consensus on the nature of the low-latitude hydrogen features found in Arabia Terra and Daedalia Planum. While equivalent water mass fractions in these regions are low enough to potentially be explained by the presence of hydrated minerals, it still remains possible that such features are the remnants of ice deposits left from a previous period of high obliquity and which is now thermally unstable and subliming. In order to explore the thermal stability of putative ice deposits at low latitudes, we use the Geophysical Fluid Dynamics Laboratory (GFDL) Mars GCM with a newly integrated subsurface scheme to trace the deposition and sublimation rates of water ice, adsorbate and vapor across the planet at varying obliquities. In addition, these results help resolve the question of the dominant means of ice emplacement in the near surface, whether such ice is the result of buried surface deposits, or in situ emplaced ice due to vapor diffusion.

Mischna, M. A.↗

The GLACE-2 Experiment

A major motivation for the study of the coupled land-atmosphere system is the idea that soil moisture anomalies may affect future meteorological variables through their effects on future surface energy and water budgets. If true, the accurate initialization of soil moisture in a subseasonal or seasonal forecast system may improve forecast skill, making the forecast products more valuable to society. The Global Land-Atmosphere Coupling Experiment (GLACE-2) project is examining, with a wide variety of models, the degree to which subseasonal (out to two months) precipitation and air temperature forecasts improve through the realistic initialization of soil moisture. For the first time ever, a global consensus should emerge regarding the value of land initialization for forecasts, perhaps motivating national forecast centers to make full use of land moisture initialization in their operations. Participants in GLACE-2 perform two series of forecasts, each consisting of 100 2-month forecast ensembles (10 members per ensemble) covering ten boreal spring and summer start-dates in each of the years 1986-1995. Series 1 utilizes realistic land surface state initialization, provided through a decadal offline simulation using realistic meteorological forcing, as provided by the Global Soil Wetness Project - Phase 2 (GSWP-2), a research activity of the Global Land-Atmosphere System Study (GLASS) of GEWEX. Series 2 is identical to Series 1 in every way except for the fact that it does not benefit from realistic land state initialization. Through the comparison of Series 1 and 2, we isolate the impact of land initialization on the forecasts. Optional extensions to these base runs include forecasts covering additional years, using alternative meteorological forcing for the land initialization. To date, GLACE-2 has garnered participation from eleven modeling groups, covering 13 atmospheric models. Analysis of available results is already well underway, both at the individual modeling institutions and at the NASA Goddard Space Flight Center, which is coordinating the project. Analysis focuses on two elements of the forecast problem: (i) the quantification of model-specific "predictability" (i.e., the degree to which simulated atmospheric chaos will foil a forecast, even under the assumption of"perfect" model physics, initialization data, and validation data) and its decay with time; and (ii) the quantification of forecast skill, determined through a comparison of predicted precipitation and air temperature against observations. Indeed, the specific contribution of land initialization to both these elements is isolated through a comparison of the Series 1 and 2 forecasts. We examine the two elements at four different forecast leads: 1-15, 16-30, 31-45, and 46-60 days. Statistics-based approaches for enhancing skill (essentially using observational statistics to reduce the impact of the models' climatic biases) are also tested. In the present talk, we provide an update of progress in GLACE-2, featuring quantifications of predictability and forecast skill for a number of the participating models and providing a "first look" at the desired consensus view of land impacts on subseasonal forecasts.

Koster, Randal↗

Best practices in NMR metabolomics: Current state

A literature survey was conducted to identify current practices used by NMR metabolomics investigators when conducting and reporting their metabolomics studies. A total of 463 papers from 2020 and 80 papers from 2010 were selected from PubMed and were manually analyzed by a team of investigators to assess the extent and completeness of the experimental procedures and protocols reported. A significant number of the papers did not report on essential experimental details, incompletely stated which statistical methods were used, improperly applied supervised multivariate statistical analyses, or lacked validation of statistical models. A large diversity of protocols and software were identified, which suggests a lack of consensus and a relatively limited use of commonly agreed upon standards for conducting and reporting NMR metabolomics studies. In conclusion, the overall intent of the survey is to inform and encourage the NMR metabolomics community to develop and adopt best-practices for the field.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Excitation Intensity- and Size-Dependent Halide Photosegregation in CsPb(I 0.5 Br 0.5 ) 3 Perovskite Nanocrystals

Although broad consensus exists that photoirradiation of mixed-halide lead perovskites leads to anion segregation, no model today fully rationalizes all aspects of this near ubiquitous phenomenon. In this work, we quantitatively compare experimental, CsPb(I 0.5 Br 0.5 ) 3 nanocrystal (NC) terminal anion photosegregation stoichiometries and excitation intensity thresholds to a band gap-based, thermodynamic model of mixed-halide perovskite photosegregation. Mixed-halide NCs offer strict tests of theory given physical sizes, which dictate local photogenerated carrier densities. We observe that mixed-anion perovskite NCs exhibit significant robustness to photosegregation, with photosegregation propensity decreasing with decreasing NC size. Observed size- and excitation intensity-dependent photosegregation data agree with model predicted size- and excitation intensity-dependent terminal halide stoichiometries. Established correspondence between experiment and theory, in turn, suggests that mixed-halide perovskite photostabilities can be predicted a priori using local gradients of (empirical) Vegard’s law expressions of composition-dependent band gaps.

36 MATERIALS SCIENCE↗

Substorm theories: United they stand, divided they fall

Consensus on the timing and mapping of substorm features has permitted a synthesis of substorm models. Within the synthesis model the mechanism for onset of substorm expansion is still unknown. Possible mechanisms are: growth of an ion tearing mode, current disruption by a cross-field current instability, and magnetosphere-ionosphere coupling. While the synthesis model is consistent with overall substorm morphology, including near-Earth onset, none of the onset theories, taken individually, appear to account for substorm expansion onset. A grand synthesis with unification of the underlying onset theories appears necessary.

Erickson, Gary M.↗

Second NASA Technical Interchange Meeting (TIM): Advanced Technology Lifecycle Analysis System (ATLAS) Technology Tool Box (TTB)

The Advanced Technology Lifecycle Analysis System (ATLAS), a spreadsheet analysis tool suite, applies parametric equations for sizing and lifecycle cost estimation. Performance, operation, and programmatic data used by the equations come from a Technology Tool Box (TTB) database. In this second TTB Technical Interchange Meeting (TIM), technologists, system model developers, and architecture analysts discussed methods for modeling technology decisions in spreadsheet models, identified specific technology parameters, and defined detailed development requirements. This Conference Publication captures the consensus of the discussions and provides narrative explanations of the tool suite, the database, and applications of ATLAS within NASA s changing environment.

ONeil, D. A.↗

Thermodynamics in the Suppressed Phase of the Madden-Julian Oscillation Using a Multiplatform Strategy

The Madden-Julian Oscillation (MJO) represents a prominent mode of intraseasonal tropical variability. It is manifest by coherent large-scale changes in atmospheric circulation, convection, and thermodynamic processes. Preconditioning of the environment prior to the active phase of the MJO has been noted, but the balance of theorized mechanisms to accomplish this process remains unresolved. Further, there is a lack of consensus on the means by which primary initiation of an MJO event occurs. Observational and modeling efforts have recently been undertaken to advance our understanding of the physical underpinnings governing MJO development. However these intensive studies are often limited in space and/or time and are potentially subject to model deficiencies. Satellite observations, especially those providing vertical resolution of temperature and moisture, provide an opportunity to expand our knowledge of processes critical to MJO initiation and preconditioning. This work will provide an analysis of suppressed phase thermodynamics with an emphasis on the use of a complementary suite of satellite observations including AIRS/AMSU-A profiles, CERES radiative fluxes, and cloud properties observed by MODIS. Emphasis of this work will regard the distribution of cloud regimes, their radiative-convective effects, and their relationship to moist static energy during the recharge and suppressed stages of MJO initiation and eastward propagation. The analyses will make use of cloud regimes from MODIS observations to provide a compositing technique that enables the identification of systematic connections between different cloud regimes and the larger scale environment. Within these cloud regimes, the relationship between the associated cloud-radiative effects observed by CERES, vertically-resolved and vertically-integrated thermodynamics using AIRS/AMSU-A observations, and atmospheric boundary layer fluxes will be demonstrated.

Roberts, J. Brent↗

Ringing Artifact Reduction Method for Ultrasound Reconstruction Using Multi-Agent Consensus Equilibrium

Non-destructive characterization of multi-layered structures that can be accessed from only a single side is important for applications such as well-bore integrity inspection. Existing methods related to Synthetic Aperture Focusing Technique (SAFT) rapidly produce acceptable results but with significant artifacts. Recently, ultrasound model-based iterative reconstruction (UMBIR) approaches have shown significant improvements over SAFT. However, even these methods produce ringing artifacts due to the high fractional-bandwidth of the excitation signal.In this paper, we propose a ringing artifact reduction method for ultrasound image reconstruction that uses a multi-agent consensus equilibrium (RARE-MACE) framework. Our approach integrates a physics-based forward model that accounts for the propagation of a collimated ultrasonic beam in multi-layered media, a spatially varying image prior, and a denoiser designed to suppress the ringing artifacts that are characteristic of reconstructions from high-fractional bandwidth ultrasound sensor data. We test our method on simulated and experimental measurements and show substantial improvements in image quality compared to SAFT and UMBIR.

Alanazi, Abdulrahman M↗

Evaluation of Aerosol-cloud Interaction in the GISS Model E Using ARM Observations

Observations from the US Department of Energy's Atmospheric Radiation Measurement (ARM) program are used to evaluate the ability of the NASA GISS ModelE global climate model in reproducing observed interactions between aerosols and clouds. Included in the evaluation are comparisons of basic meteorology and aerosol properties, droplet activation, effective radius parameterizations, and surface-based evaluations of aerosol-cloud interactions (ACI). Differences between the simulated and observed ACI are generally large, but these differences may result partially from vertical distribution of aerosol in the model, rather than the representation of physical processes governing the interactions between aerosols and clouds. Compared to the current observations, the ModelE often features elevated droplet concentrations for a given aerosol concentration, indicating that the activation parameterizations used may be too aggressive. Additionally, parameterizations for effective radius commonly used in models were tested using ARM observations, and there was no clear superior parameterization for the cases reviewed here. This lack of consensus is demonstrated to result in potentially large, statistically significant differences to surface radiative budgets, should one parameterization be chosen over another.

Clouds↗

AI Model Benchmarking for Nonproliferation Applications: Steel Thread Benchmarking Task Force Technical Report (Rev. 2)

Steel Thread is a NA-22 venture that seeks to build trustworthy, reliable AI models that can be used in a wide variety of nonproliferation tasks. A key aspect of building these models is developing appropriate benchmarks and evaluation methods, which will enable the venture to identify and adapt models to provide the most value in the nonproliferation domain. Benchmarks must be relevant to key tasks in this domain, such as question answering, information retrieval, document summarization and classification, consensus analysis, and image and data analysis. This report 1) provides an overview of benchmark design, evaluation, and challenges; 2) reviews a variety of open benchmarks, with a focus on language models and tasks; and 3) identifies benchmarks that are most relevant to Steel Thread. This report is intended to serve as a basis for further efforts to classify and evaluate benchmarks and their correlation with success on nonproliferation-specific tasks. The Steel Thread venture has defined benchmarks to be a particular combination of a dataset (or datasets) and a metric (or metrics) conceptualized as representing one or more specific tasks or sets of abilities for a specific modality. It is adopted by a research community as a shared framework for comparing methods.1 It includes 1) Data: Labeled (a designated subset not used for training, which could be all the data), 2) Metric: A way to quantify performance, 3) Task/Ability: What the benchmark is testing, 4) Protocol: A structured and repeatable evaluation process, 5) Baseline/Reference Model: For comparison; could be statistical, rule-based, SME-derived, or another model, and 6) Maintenance Plan: to update with new information over time; important for long-term utility. For further clarity, the definition includes what a benchmark, in this context, is not. It is not a corpus of training data, specific to a model (it is intended to apply to a range of models), a universal evaluation of performance, a guarantee that the ‘top’ model on the leaderboard will be the best fit for every specific use case, an all-encompassing proof of a model’s universal quality, nor is it a one-size-fits-all measure of success. It does not cover every real-world constraint (like operational, ethical, or cost considerations), a systems integration test, or a unit test. This definition was inspired by and resulted from discussions within the Steel Thread Benchmarking Task Force. This group was formed to define what we would mean as a benchmark within Steel Thread but persisted as the need to develop a thorough understanding of the large and expanding existing benchmarking space. This technical report is a result of the group’s divide and conquer approach to exploring this space. The release of benchmarks might not be progressing as quickly as model development, but it is moving very fast, as many benchmarks quickly become saturated, when state-of-the-art models score so close to the benchmark’s ceiling that their results are virtually indistinguishable. At that point, the test no longer differentiates between new systems, so researchers usually stop reporting scores as the benchmark no longer informs about improvements from the next generation of models. In the OpenAI announcement of GPT-5, they reported results on six flagship public benchmarks (AIME 2025, SWE-bench Verified, Aider Polyglot, MMMU, HealthBench Hard, GPQA) but the full system-card covers roughly thirty-five separate evaluations, comprising hundreds of test task items in total. There have been some efforts to summarize benchmarks in specific fields, like for text-to-image generation, but these surveys have had a narrow methodology scope. Therefore, a comprehensive survey of all benchmarks or even all benchmarks that could be relevant to Steel Thread is outside of the scope of this report. We chose some specific benchmarks to investigate in detail.

97 MATHEMATICS AND COMPUTING↗

An Overview of the NASA Lift+Cruise eVTOL Crash Test

Introduction – NASA RVLT Project Impact Dynamics / Crash Safety Task - Task Objective: “To improve the crashworthiness and impact safety of Urban Air Mobility (UAM) vehicle and provide data to simplify the certification process. Efforts will include development of validated computational models of these vehicles, as well as other impacting bodies such as birds and drones. Efforts will also focus on developing and evaluating energy absorbing and crush properties of emerging and non-traditional composite materials and processes. Finally, occupant protection will be addressed using computational models and physical assets as it pertains to all rotorcraft environments.” - Problem Statement: “There currently is a lack of data for requirements regarding the crashworthy performance of UAM vehicles and impact loads generated by a bird strike. To address this technology gap, NASA will develop test guidelines, adopt modeling methodologies demonstrating capability for ‘certification by analysis’, acquire vehicle and occupant data on full-scale representative vehicles, and provide data/guidance to consensus standards organizations and the UAM community.” - 4 Main focus points - The investigation of occupant injury using physical and computational assets - The development of energy absorbing technology - The generation of data from sub- and full-scale crash test data - The execution of advanced finite element modelling techniques

evtol↗

Uncertain of uncertainties? A comparison of uncertainty quantification metrics for chemical data sets

Abstract With the increasingly more important role of machine learning (ML) models in chemical research, the need for putting a level of confidence to the model predictions naturally arises. Several methods for obtaining uncertainty estimates have been proposed in recent years but consensus on the evaluation of these have yet to be established and different studies on uncertainties generally uses different metrics to evaluate them. We compare three of the most popular validation metrics (Spearman’s rank correlation coefficient, the negative log likelihood (NLL) and the miscalibration area) to the error-based calibration introduced by Levi et al. ( Sensors 2022 , 22 , 5540). Importantly, metrics such as the negative log likelihood (NLL) and Spearman’s rank correlation coefficient bear little information in themselves. We therefore introduce reference values obtained through errors simulated directly from the uncertainty distribution. The different metrics target different properties and we show how to interpret them, but we generally find the best overall validation to be done based on the error-based calibration plot introduced by Levi et al. Finally, we illustrate the sensitivity of ranking-based methods (e.g. Spearman’s rank correlation coefficient) towards test set design by using the same toy model ferent test sets and obtaining vastly different metrics (0.05 vs. 0.65).

Rasmussen, Maria H.↗

Plutonium Age Dating Interlaboratory Comparison Overview - Project Design, Sample Preparation, and Results [Slides]

Project Design – How do you validate measured Pu model age? There are no certified reference materials (CRMs) that are certified for Pu model age or purification dates. There are no Am isotopic CRMs - IRMM 0243 243 Am spike has 241 Am impurity that can be used; Community working toward "consensus ages." This project executed and evaluated results from a Pu age dating interlaboratory comparison with six IAEA NWAL participant laboratories. It also ran the first quality control evaluation of single-picogram to sub-picogram scale interlaboratory 241 Am assay measurements from cotton swipe matrices. Results are promising, with a majority of 241 Am/ 241 Pu model age results agree to within 1 to 4 years. The calculated 241 Am assay results show interlaboratory variability, expanded percent uncertainties on calculated consensus 241 Am concentrations were: PuAge-S1 = 3.1 %, PuAge-S2 = 23 %, and PuAge-S3 = 26 %. Data can be used to investigate laboratory methods and improve precision and accuracy of 241 Pu and 241 Am assay for future campaigns.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Survey of the supporting research and technology for the thermal protection of the Galileo Probe

The Galileo Probe, which is scheduled to be launched in 1985 and to enter the hydrogen-helium atmosphere of Jupiter up to 1,475 days later, presents thermal protection problems that are far more difficult than those experienced in previous planetary entry missions. The high entry speed of the Probe will cause forebody heating rates orders of magnitude greater than those encountered in the Apollo and Pioneer Venus missions, severe afterbody heating from base-flow radiation, and thermochemical ablation rates for carbon phenolic that rival the free-stream mass flux. This paper presents a comprehensive survey of the experimental work and computational research that provide technological support for the Probe's heat-shield design effort. The survey includes atmospheric modeling; both approximate and first-principle computations of flow fields and heat-shield material response; base heating; turbulence modelling; new computational techniques; experimental heating and materials studies; code validation efforts; and a set of 'consensus' first-principle flow-field solutions through the entry maneuver, with predictions of the corresponding thermal protection requirements.

Howe, J. T.↗

Can a variable alpha induce limit cycle behavior and exponential luminosity decay in transient soft x ray sources?

There has been, recently, a revival of the stability problem of accretion disks. Much of this renewed interest is due to recent observational data on transient soft X-ray novae, which are low-mass X-ray binaries. It is widely believed that nonsteady mass transfer from the secondary onto the compact primary, through an accretion disk, is the reason for the observed spectacular events in the form of often repetitive outbursts, with recurrence times ranging from 1 to 60 yr and duration time on the scale of months. Though not having reached yet a consensus about the nature of the mechanism that regulates the mass transfer, the disk thermal instability model seems to be favored by the fact that the rise in the hard X-ray luminosity is prior to the rise in the soft X-ray luminosity, while the mass transfer instability model seems to be hindered by the fact that the luminosity during quiescence is unable to trigger the thermal instability. However, it should be stressed that, remarkably, the X-ray light curves of these X-ray novae all show overall exponential decays, a feature quite difficult to reproduce in the framework of the viscous disk model, which yields powerlike luminosity decay. Taking into account this observational constraint, we have studied the temporal evolution of perturbations in the accretion rate, under the assumption that alpha is radial and parameter dependent. The chosen dependence is such that the model can reproduce limit cycle behavior (the system is locally unstable but globally stable). However, the kind of dependence we are looking for in alpha does not allow us to use the usual Shakura and Sunyaev procedure in the sense that we no longer can obtain a linearized continuity equation without explicit dependence on the accretion rate. This is so because now we cannot eliminate the accretion rate by using the angular momentum conservation equation.

Meirellesfilho, C.↗