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At least 163 records · Page 9

Chimbuko: A Workflow-Level Scalable Performance Trace Analysis Tool

Due to the sheer volume of data it is typically impractical to analyze the detailed performance of an HPC application running at-scale. While conventional small-scale benchmarking and scaling studies are often sufficient for simple applications, many modern workflow-based applications couple multiple elements with competing resource demands and complex inter-communication patterns for which performance cannot easily be studied in isolation and at small scale. This work discusses Chimbuko, a performance analysis framework that provides real-time, in situ anomaly detection. By focusing specifically on performance anomalies and their origin (aka provenance), data volumes are dramatically reduced without losing necessary details. To the best of our knowledge, Chimbuko is the first online, distributed, and scalable workflow-level performance trace analysis framework. We demonstrate the tool's usefulness on Oak Ridge National Laboratory's Summit system.

97 MATHEMATICS AND COMPUTING↗

Chimbuko: A Workflow-Level Scalable Performance Trace Analysis Tool

ABSTRACT Due to the sheer volume of data it is typically impractical to analyze the detailed performance of an HPC application running at-scale. While conventional small-scale benchmarking and scaling studies are often sufficient for simple applications, many modern workflow-based applications couple multiple elements with competing resource demands and complex inter-communication patterns for which performance cannot easily be studied in isolation and at small scale. This work discusses Chimbuko, a performance analysis framework that provides real-time, in situ anomaly detection. By focusing specifically on performance anomalies and their origin (aka provenance), data volumes are dramatically reduced without losing necessary details. To the best of our knowledge, Chimbuko is the first online, distributed, and scalable workflow-level performance trace analysis framework. We demonstrate the tool's usefulness on Oak Ridge National Laboratory's Summit system.

97 MATHEMATICS AND COMPUTING↗

Adaptive elasticity policies for staging-based in situ visualization

In situ processing aims to alleviate the growing gap between computation and I/O capabilities by performing data processing close to the data source. In situ processing is widely used to process data generated by multiple data sources, including observation data from edge devices or scientific observational facilities and the simulation data generated by scientific computation on a high-performance computing (HPC) platform. For a scientific workflow that is run on an HPC platform and composed of a simulation program and an in situ data analytics or visualization (abbreviated as ana/vis) task, there is an implicit assumption that the computing resources assigned to the workflow keep static during the workflow execution. However, with the converging trend between the HPC and cloud computing platform, running the in situ ana/vis task in an elastic way is promising to decrease its overhead and improve its resource utilization rate. Resource elasticity represents the ability to change resource configurations such as the number of computing nodes/processes during workflow execution. An elastic job may dynamically adjust resource configurations; it may use a few resources at the beginning and more resources toward the end of the job when interesting data appear. However, it is hard to predict a priori how many computing nodes/processes need to be added/removed during the workflow execution to adapt to changing workflow needs. How to efficiently guide elasticity operations, such as growing or shrinking the number of processes used for in situ analysis during workflow execution, is an open-ended research question. In this article, we present adaptive elasticity policies that adopt workflow runtime information collected during workflow execution to predict how to trigger the addition/removal of processes in order to minimize in situ processing overhead. Taking in situ visualization tasks as an example, we integrate the presented elasticity policies into a staging-based elastic workflow and evaluate its efficiency in multiple elasticity scenarios. Compared with the situation without elasticity or with a static elasticity policy that uses a fixed number of processes for each rescaling operation, the adaptive elasticity policy can save overhead in finding a proper resource configuration and improve resource utilization efficiency. Furthermore, one experiment illustrates that the adaptive elasticity policy saves 41% of core-hours compared with the situation without the resource elasticity.

97 MATHEMATICS AND COMPUTING↗

Assessing the numerical stability of physics models to equilibrium variation through database comparisons on DIII-D

High fidelity kinetic equilibria are crucial for tokamak modeling and analysis. Manual workflows for constructing kinetic equilibria are time consuming and subject to user error, motivating development of automated equilibrium reconstruction tools to provide accurate and consistent reconstructions for downstream physics analysis. These automated tools also provide access to kinetic equilibria at large database scales, which enables the quantification of general uncertainties arising from equilibrium reconstruction techniques. In this paper, we compare a large database of DIII-D kinetic equilibria generated manually by physics experts to equilibria from automated kinetic reconstruction tools, assessing the impact of reconstruction method on equilibrium parameters and resulting magnetohydrodynamic stability calculations. We find agreement among scalar parameters, whereas profile quantities, such as the bootstrap current, show larger disagreements. We analyze ideal kink and classical tearing stability with DCON and STRIDE respectively, finding that the kink stability calculation is generally more robust than the tearing index Δ' calculation. We find that in 90% of cases, both kink stability classifications are unchanged between the manual expert and automated kinetic equilibria.

CAKE↗

An automated workflow to screen alkene reductases using high-throughput thin layer chromatography

Background: Synthetic biology efforts often require high-throughput screening tools for enzyme engineering campaigns. While innovations in chromatographic and mass spectrometry-based techniques provide relevant structural information associated with enzyme activity, these approaches can require cost-intensive instrumentation and technical expertise not broadly available. Moreover, complex workflows and analysis time can significantly impact throughput. To this end, we develop an automated, 96-well screening platform based on thin layer chromatography (TLC) and use it to monitor in vitro activity of a geranylgeranyl reductase isolated from Sulfolobus acidocaldarius (SaGGR). Results: Unreduced SaGGR products are oxidized to their corresponding epoxide and applied to thin layer silica plates by acoustic printing. These derivatives are chromatographically separated based on the extent of epoxidation and are covalently ligated to a chromophore, allowing detection of enzyme variants with unique product distributions or enhanced reductase activity. Herein, we employ this workflow to examine farnesol reduction using a codon-saturation mutagenesis library at the Leu377 site of SaGGR. We show this TLC-based screen can distinguish between fourfold differences in enzyme activity for select mutants and validated those results by GC–MS. Conclusions: With appropriate quantitation methods, this workflow can be used to screen polyprenyl reductase activity and can be readily adapted to analyze broader catalyst libraries whose products are amenable to TLC analysis.

09 BIOMASS FUELS↗

ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data

Background: Metagenomics and metatranscriptomics studies provide valuable insight into the composition and function of microbial populations from diverse environments, however the data processing pipelines that rely on mapping reads to gene catalogs or genome databases for cultured strains yield results that underrepresent the genes and functional potential of uncultured microbes. Recent improvements in sequence assembly methods have eased the reliance on genome databases, thereby allowing the recovery of genomes from uncultured microbes. However, configuring these tools, linking them with advanced binning and annotation tools, and maintaining provenance of the processing continues to be challenging for researchers. Results: Here we present ATLAS, a software package for customizable data processing from raw sequence reads to functional and taxonomic annotations using state-of-the-art tools to assemble, annotate, quantify, and bin metagenome and metatranscriptome data. Genome-centric resolution and abundance estimates are provided for each sample in a dataset. ATLAS is written in Python and the workflow implemented in Snakemake; it operates in a Linux environment, and is compatible with Python 3.5+ and Anaconda 3+ versions. The source code for ATLAS is freely available, distributed under a BSD-3 license. Conclusions: ATLAS provides a user-friendly, modular and customizable Snakemake workflow for metagenome and metatranscriptome data processing; it is easily installable with conda and maintained as open-source on GitHub at https://github.com/metagenome-atlas/atlas.

59 BASIC BIOLOGICAL SCIENCES↗

Assessing Low-Temperature Geothermal Play Types: Relevant Data and Play Fairway Analysis Methods

The U.S. Department of Energy (DOE) Geothermal Technologies Office (GTO) is supporting the Geothermal Heating and Cooling Geospatial Datasets and Analysis project conducted by the National Renewable Energy Laboratory (NREL) as part of a broader effort to demonstrate the multi-faceted value of integrating geothermal power and geothermal heating and cooling (GHC) technologies into national decarbonization plans and community energy plans. Currently, there is a need to establish baseline low-temperature geothermal resource datasets and evaluate methods for deploying these technologies to provide the basis for supporting private sector investment. This project is focused on collecting baseline datasets, updating conceptual models, and creating Play Fairway Analysis (PFA) workflows for low-temperature (<150 degrees Celsius) geothermal resources of different geothermal play types (i.e., sedimentary basin, orogenic belts, and radiogenic geothermal play types) that could be used for geothermal heating and cooling (GHC), combined heat and power (CHP), and other geothermal direct uses (GDU) applications. Low-temperature geothermal resources are defined as reservoirs - natural or engineered - with temperatures <150 degrees Celsius. While the focus in the NREL effort is on GHC, resources at the upper end of this temperature range can also be used for small-scale power generation. This project does not include Ground Source Heat Pumps (GSHPs) technologies because they can be effectively developed almost anywhere. Low-temperature geothermal resources have not been studied as extensively as higher- to medium-temperature geothermal resources, but there is recent interest in improving understanding of these types of resources with an uptick of interest in geothermal technologies for decarbonizing heating and cooling systems. In addition, Enhanced Geothermal Systems (EGS) and other emerging technologies for exploiting petrothermal resources have opened the possibility of utilizing deep sedimentary basin systems, where porous media provide permeability and high temperatures can be reached at great depths. This project takes the approach of classifying low- temperature geothermal resources by geothermal play type (GPT). We defined and characterized three major classes of low-temperature GPT: sedimentary basins, orogenic systems, and radiogenic systems. We develop methodologies for evaluating and analyzing the potential for these resources building off the PFA approach to de-risking geothermal exploration and characterization. The proposed PFA approach for low-temperature geothermal resources includes: 1) identifying relevant data (e.g., datasets such bottom-hole temperatures from oil and gas wells, heat flow data, Quaternary faults and stress field data, geophysical data, etc.); 2) grouping and weighting of relevant datasets into PFA criteria (e.g., geological, risk, and economic criteria); 3) uncertainty quantification; 4) developing favorability or common risk maps for low-temperature geothermal resources to identify potential locations for more focused data collection; and 5) estimating electric power generation and heating potential at those locations using the GeoRePORT Resource Size Assessment Tool (RSAT). This project should facilitate future deployment of GHC, CHP, and GDU by providing data, tools, and a workflow applicable to low-temperature geothermal resources. Increased deployment of GHC and GDU will help achieve national and local decarbonization goals.

15 GEOTHERMAL ENERGY↗

PROTECT: Production and Reuse of Thermally Efficient Ceramic Thermal Protection Systems

PROTECT (Production and Reuse Of Thermally Efficient Ceramic TPS) is a NASA Early Career Initiative focused on developing the next generation of reusable ceramic thermal protection systems (TPS). This project addresses key challenges in TPS design, including temperature capability, thermal stability, and refurbishment time, by integrating novel material development with predictive modeling. Leveraging enhanced capabilities in NASA’s Porous Microstructure Analysis (PuMA) software, PROTECT introduces new modeling tools to predict the thermal and mechanical behavior of fibrous ceramic materials. These tools enable accurate prediction of performance metrics such as thermal conductivity and structural integrity, reducing reliance on costly physical testing. Preliminary advances in these areas will be presented. To support model validation, PROTECT is building a comprehensive database of raw material properties using advanced characterization techniques, including micro computed tomography (CT) scanning in collaboration with the University of Illinois Urbana-Champaign (UIUC). The presentation will detail the sampling workflows and analysis methods used to generate this detailed microstructural data and how it is used to develop improved models in PuMA. This multi-center collaboration, spanning NASA (JSC, ARC, KSC, GRC), Oak Ridge National Laboratory, UIUC, and SpaceX, is developing tailored TPS solutions for LEO, lunar, and Martian missions. By bridging heritage systems with the demands of modern spaceflight, PROTECT contributes to the advancement of reusable TPS technologies for future exploration missions.

Propulsion, Refractory, and Coating Materials↗

PROTECT: Production and Reuse of Thermally Efficient Ceramic Thermal Protection Systems

PROTECT (Production and Reuse Of Thermally Efficient Ceramic TPS) is a NASA Early Career Initiative focused on developing the next generation of reusable ceramic thermal protection systems (TPS). This project addresses key challenges in TPS design, including temperature capability, thermal stability, and refurbishment time, by integrating novel material development with predictive modeling. Leveraging enhanced capabilities in NASA’s Porous Microstructure Analysis (PuMA) software, PROTECT introduces new modeling tools to predict the thermal and mechanical behavior of fibrous ceramic materials. These tools enable accurate prediction of performance metrics such as thermal conductivity and structural integrity, reducing reliance on costly physical testing. Preliminary advances in these areas will be presented. To support model validation, PROTECT is building a comprehensive database of raw material properties using advanced characterization techniques, including micro computed tomography (CT) scanning in collaboration with the University of Illinois Urbana-Champaign (UIUC). The presentation will detail the sampling workflows and analysis methods used to generate this detailed microstructural data and how it is used to develop improved models in PuMA. This multi-center collaboration, spanning NASA (JSC, ARC, KSC, GRC), Oak Ridge National Laboratory, UIUC, and SpaceX, is developing tailored TPS solutions for LEO, lunar, and Martian missions. By bridging heritage systems with the demands of modern spaceflight, PROTECT contributes to the advancement of reusable TPS technologies for future exploration missions.

Propulsion, Refractory, and Coating Materials↗

Frontier Job-Centric Telemetry Dataset

Comprehensive analysis of high-performance computing (HPC) systems requires linking workload execution to system behavior. This kind of analysis is vital for diagnosing performance issues, managing capacity, detecting anomalous workloads, and understanding how applications interact with system hardware. This job-centric telemetry dataset unifies scheduler job records with node-level measurements, enabling direct association between workloads and their corresponding power, thermal, and performance characteristics. It contains sanitized, scheduler related metadata for 152,400 individual jobs that ran on the Frontier supercomputer and ended on selected days throughout 2024 and 2025, a subpopulation of ~6.8% of the total number of allocated jobs with non-zero run time on the system over that same period. Each is linked with files that contain telemetry time series records of the power utilization and temperature behavior of its allocated nodes and their processors during the run time of the job. Where available, a portion of the job files also contain network performance time series. Jobs are sampled from select days that reflect normal levels of user activity and possess job size distributions with large numbers of leadership class jobs (>20% of Frontier nodes). Jobs in this dataset attempt to best represent successful user workflows.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Multiscale Characterization of Additive Manufacturing Components with Computed Tomography, 3D X-ray Microscopy, and Deep Learning

Additive manufacturing (AM) facilitates the creation of complex-geometry parts, driving advancements in lightweight aerospace components, high-efficiency engine cooling channels, and customized medical implants. However, ensuring the quality and reliability of AM parts remains challenging due to internal defects, surface irregularities, porosity, and residual trapped powder, which are often inaccessible to traditional inspection methods. Recent developments in X-ray computed tomography (XCT) and 3D X-ray microscopy (XRM), particularly systems equipped with resolution-at-a-distance (RaaD™) capabilities, enable high-resolution, non-destructive evaluation of AM components across multiple scales, from sub-micrometer to macroscopic levels. This paper explores modern XCT and XRM techniques for multiscale characterization of AM parts, focusing on their ability to detect and analyze defects such as porosity, cracks, inclusions, and surface roughness, while offering insights into defect formation mechanisms, material properties, and process-induced variations. The integration of deep learning (DL) frameworks, including Simurgh, DeepRecon, and DeepScout, enhances XCT/XRM workflows by reducing scan times, improving resolution recovery, and enabling accurate defect detection even with limited projection data. These DL-based methods overcome limitations of traditional reconstruction techniques, enabling faster, more reliable characterization of dense materials like Inconel 718 and novel alloys such as AlCe. Applications include process parameter optimization, high-throughput quality control, and multistage AM process evaluation, with DL-enhanced workflows accelerating analysis times from weeks to days. Correlative imaging approaches further validate XCT and XRM data against scanning electron microscopy (SEM) images of physically sectioned samples, confirming the accuracy of DL-based reconstructions and enabling comprehensive defect analysis. While challenges remain in generalizing DL models to diverse materials and imaging conditions, improvements in resolution, noise reduction, and defect detection highlight the transformative potential of these methods. This multiscale and correlative approach enables precise identification and correlation of microstructural features with the overall performance of AM components. By integrating advanced XCT, XRM, and DL techniques, this paper demonstrates a significant leap forward in AM characterization, offering valuable insights into the relationships between processing parameters, microstructure, and part performance, and driving innovations that enhance the quality and reliability of AM products for demanding industrial applications.

Additive manufacturing↗

Real-time visualization of particle evolution during reactive flux-assisted processing of aluminum melts

Here, a multi-modal, multi-scale correlative tomography investigation of Al-TiC metal matrix composites processed via flux-assisted reaction synthesis is reported. Synchrotron X-ray microradiography is utilized to visualize the reaction and particle evolution in real-time. Changes in particle diameter and areal number density suggest that the process is nucleation- rather than growth-dominated. At 950 °C, the bulk of the reaction takes place in a relatively short time span of less than 600 s. The microstructure is imaged at higher resolution in 2D (scanning electron microscopy) and 3D (synchrotron X-ray nanotomography), revealing the formation of carbide particles with a hexagonal platelet morphology. We propose that the morphology arises due to the incorporation of Si impurities during the experiment. It is expected that the correlative tomography workflow and analysis may guide future metal matrix composite (MMC) processing strategies.

36 MATERIALS SCIENCE↗

Preparation of the Multi-Site Data Processing at the Vera C. Rubin Observatory

The Vera C. Rubin Observatory’s Legacy Survey of Space and Time (LSST) Camera is scheduled to start taking data in the summer of 2025. The Data Release Production will run the LSST Science Pipe software at data facilities in the US, France and the UK. The LSST Science Pipeline consists of complex directed acyclic graphs (DAGs) of tasks. Rubin will use the Production and Distributed Analysis (PanDA) workflow and workload management system to orchestrate this complex workflow and the distribution of workloads to the data facilities. When run end-to-end by a team of data production staff, this processing (the Science Pipelines, distributed by the workflow and workload management system) is referred to as a 'campaign'. This paper describes the central services and data facility specific services that support this multi-site data process model, including the service deployment infrastructure, the workload and workflow system, the Campaign Management tools, and connection to Rubin Data Management. This paper will also mention the experience of processing the Rubin Commissioning Camera data. All these are part of the effort to scale up the processing capabilities for the expected very large data volume from the LSST Camera.

Yang, Wei [SLAC]↗

Linear simulation of magnetohydrodynamic plasma response to three-dimensional magnetic perturbations in high-β P plasmas

In this work, we report the numerical analyses of linear magnetohydrodynamics (MHD) plasma response to applied three-dimensional magnetic perturbations (MPs) in a joint DIII-D/EAST collaboration on high-β P (poloidal beta) plasmas, utilizing the extended-MHD code M3D-C1, with the purpose of realizing a better understanding of the existing experiment in which the n=3 MPs were applied to such high-β P plasmas attempting to control large amplitude type-I ELMs. Such high-β P plasmas obtained at the DIII-D tokamak feature an upper-biased double null configuration, a high edge safety factor q 95 ~6.4, and a stable internal transport barrier (ITB) leading to relatively high core pressures. Single-fluid simulations show that the plasma response to n=3 MPs, including both non-resonant/kinking and resonant components, is significantly weaker than that to n=1 or 2 MPs. To survey the impact of q 95 on plasma response to applied MPs, the SEGWAY (Self-consistent Equilibrium Generating Workflow for AnalYsis) module, developed in the OMFIT integrated modelling framework, is employed to generate a series of equilibria with a wide range of q 95 while other key parameters including the normalized beta, electron density at pedestal top, and plasma shape are kept fixed. Compared to the vacuum response, single-fluid M3D-C1 simulations predict a much more significant decrease of resonant plasma response to the applied n=3 MPs at the maximum penetration radii as q 95 increases. In contrast to single-fluid simulation results showing resonant penetration occurs only near the pedestal top where the E×B toroidal rotation frequency is zero, two-fluid simulations show two comparable resonant penetrations locating near the pedestal top and the ITB foot, where the perpendicular electron rotation frequency is zero. Such resonant field penetration near the ITB foot may be responsible for the observed formation of a staircase structure in both electron density and temperature profiles and thereby a considerable deterioration of global plasma performance when MPs are applied in high-β P plasmas. Motivated by this numerical work, we provide some ideas for the future research, with the purpose of realizing effective ELM control in such high-β P plasmas on the DIII-D and EAST devices.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Distributed Aerodynamic Control using Active Trailing-Edge Flaps for Large Wind Turbines

This work presents a numerical framework to investigate distributed aerodynamic control devices for application in large wind turbines. Tool capabilities were extended to facilitate multiple aerodynamic polar tables. The airfoil aerodynamics characteristics were automatically determined, and blade-pitch, generator-torque, and trailing-edge-flap controllers were tuned in-the-loop according to a specific blade design. This automated workflow allows analysis and optimization of trailing-edge flaps, enabling codesign studies. Results targeted reductions of root-flap-bending moment derivatives. The applied trailing-edge-flap control reduced the standard deviation of root-flap-bending moments by more than 6% and benefit related parameters, e.g., reduce blade-tip deflections, by up to 8%. Because of varying thrust distributions along the blade span, different flap designs have nonlinear characteristics in terms of the control objective and show best performance when located at the radial position with maximum thrust. In general, larger flaps provide a greater influence to reduce the target control objective.

17 WIND ENERGY↗

AnnualReportingWind [SWR-26-026]

AnnualReportingWind is a version-controlled repository used to generate the cost and performance results published in major wind energy reports such as the Cost of Wind Energy Review (COWER) and the Annual Technology Baseline (ATB). The repository consolidates the model configurations, assumptions, and scripts used in each reporting year so that published results can be transparently reproduced and traced back to the exact analytical setup used in the analysis. The workflows rely on several techno-economic modeling tools developed at the National Laboratory of the Rockies (NLR), including WAVES, ORBIT, LandBOSSE, WOMBAT, and FLORIS.

Mulas Hernando, Daniel [National Laboratory of the↗