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At least 163 records · Page 9

Structural coordination between active sites of a CRISPR reverse transcriptase-integrase complex

CRISPR-Cas systems provide adaptive immunity in bacteria and archaea, beginning with integration of foreign sequences into the host CRISPR genomic locus and followed by transcription and maturation of CRISPR RNAs (crRNAs). In some CRISPR systems, a reverse transcriptase (RT) fusion to the Cas1 integrase and Cas6 maturase creates a single protein that enables concerted sequence integration and crRNA production. To elucidate how the RT-integrase organizes distinct enzymatic activities, we present the cryo-EM structure of a Cas6-RT-Cas1—Cas2 CRISPR integrase complex. The structure reveals a heterohexamer in which the RT directly contacts the integrase and maturase domains, suggesting functional coordination between all three active sites. Together with biochemical experiments, our data support a model of sequential enzymatic activities that enable CRISPR sequence acquisition from RNA and DNA substrates. These findings highlight an expanded capacity of some CRISPR systems to acquire diverse sequences that direct CRISPR-mediated interference.

59 BASIC BIOLOGICAL SCIENCES↗

Enhance BISON Metal Fuel Transient Models and Enable Assessment Based on Out-of-Pile Transient Experiments

In this report, the activities and achievements made by Argonne National Laboratory for the Nuclear Energy Advanced Modeling and Simulation (NEAMS) BISON code metallic fuel validation and verification (V&V) project in FY2023, with a focus on the capability development and assessment case development for the out-of-pile transient experiments, are summarized. The liquid cladding penetration model was improved based on a comprehensive set of fuel behavior test apparatus (FBTA) test results. The new model was implemented into BISON along with a simple model to account for fuel melting effects. The metallic fuel meshing capability was also upgraded to allow local refinement using unstructured triangular mesh. Based on the previous success in developing the BISON-FIPD integration powered BISON assessment case, this database enabled BISON evaluation and V&V capability was expanded to the out-of-pile transient experiments by introducing BISON-OPTD integration. A series of initial out-of-pile transient assessment cases were implemented into BISON to provide powerful platforms to evaluate current BISON’s capabilities in simulating metallic fuel performance during out-of-pile transients. The established capabilities will also benefit the calibration and V&V of future advanced mechanistic models.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

The Spatiotemporal Evolution of Granular Microslip Precursors to Laboratory Earthquakes

Laboratory earthquake experiments provide important observational constraints for our understanding of earthquake physics. Here we leverage continuous waveform data from a network of piezoceramic sensors to study the spatial and temporal evolution of microslip activity during a shear experiment with synthetic fault gouge. We combine machine learning techniques with ray theoretical seismology to detect, associate, and locate tens of thousands of microslip events within the gouge layer. Microslip activity is concentrated near the center of the system but is highly variable in space and time. While microslip activity rate increases as failure approaches, the spatiotemporal evolution can differ substantially between stick-slip cycles. These results illustrate that even within a single, well-constrained laboratory experiment, the dynamics of earthquake nucleation can be highly complex.

58 GEOSCIENCES↗

Reactor physics benchmark experiments at the JSI TRIGA MARK II reactor - Current status and future outlook

Full text of publication follows. With the development of new high-fidelity computational methods, improvement of nuclear data, and multiphysics modelling, there is an increased need for benchmark experiments to experimentally validate the models, methods and input data. Many of the nuclear facilities designed to perform reactor physics benchmark experiments have been shut down. Therefore, research reactors offer a great opportunity for benchmark experiments, if they are well designed and performed with great care and accuracy. In this presentation we provide an overview of the past and ongoing activities related to benchmark experiments at the Jozef Stefan Institute TRIGA Mark II research reactor. The following experiments have been performed: criticality with fresh fuel, {sup 197}Au(n,γ) and {sup 27}Al(n,α) reaction rates in irradiation channels, absolute and relative {sup 197}Au(n,γ), {sup 235}U(n,f) and {sup 238}U(n,f) reaction rates in the core, burnup, kinetic parameters, control rod worth, isothermal reactivity coefficient, self-shielding, slow and fast (pulse) transients, nuclear heating, delayed and prompt gamma ray production, temperature profiles for multi-physics. Since the existing fleet of research reactors is ageing very rapidly and new experiments are needed, new research reactors should be designed and built to meet the needs of future advanced reactors, education and training, and other technologies in the coming years. We will review planned activities at the JSI TRIGA reactors and plans for the new research reactor in Slovenia. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Measurement of distribution coefficients on TODGA resin and development of a group separation for mixed activation and fission product samples

Batch equilibrium experiments were performed to determine the distribution coefficients for Sc, Ir, and Ta on N,N,N’,N’tetraoctyl-1,5-diglycolamide (TODGA) resin in various acid matrices. Distribution coefficients were determined in hydrochloric acid (Sc, Ir), nitric acid (Sc, Ta), and a mixture of nitric acid and 0.2M hydrofluoric acid (Sc, Ir, Ta). The distribution coefficients determined through these experiments were then utilized to create a group separation method for activation products, fission products, and environmental constituents.

Louie, Christina A.↗

Activation of H 2 O by ThO 2 – Experimental and Computational Studies

Here, a synergetic study that utilized anion photoelectron spectroscopy and high-level abinitio calculations has explored the activation of H 2 O molecules by ThO 2 – molecular anions. Both experiment and theory found conclusive evidence for said activation. In the experiments, this appeared as a tell-tale directional shift in the spectral profile of the anionic complex that ruled out physisorption,i.e., ThO 2 – (H 2 O), and implied chemisorption. In the computations, good agreement was found between the calculated and measured vertical detachment energies, and the atomic connectivity (the structure) of the resulting anionic complex was found to be [OTh(OH) 2 ] – .

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Large emissions of CO 2 and CH 4 due to active-layer warming in Arctic tundra

Climate warming may accelerate decomposition of Arctic soil carbon, but few controlled experiments have manipulated the entire active layer. To determine surface-atmosphere fluxes of carbon dioxide and methane under anticipated end-of-century warming, here we used heating rods to warm (by 3.8 °C) to the depth of permafrost in polygonal tundra in $Utqia\dot{g}vik$ (formerly Barrow), Alaska and measured fluxes over two growing seasons. We show that ecosystem respiration is ~30% higher in warmed plots than in control plots (0.99 μmol m -2 s -1 versus 0.67 μmol m -2 s -1 , p < 0.0001, n = 79). Additionally, the observed temperature sensitivity (Q 10 of 2.8) is higher than that imposed for soil in Earth system models or reported by arctic experiments warming only the surface. A shoulder-season warming experiment revealed that rapid snow melt, which is becoming a more common event, can result in large methane emissions that may have otherwise been oxidized to carbon dioxide. Thus, warming promotes greenhouse gas emissions from the whole, deepening active layer and may contribute to climate change amplification.

54 ENVIRONMENTAL SCIENCES↗

First-principles design of a single-atom–alloy propane dehydrogenation catalyst

The complexity of heterogeneous catalysts means that a priori design of new catalytic materials is difficult, but the well-defined nature of single-atom–alloy catalysts has made it feasible to perform unambiguous theoretical modeling and precise surface science experiments. Herein we report the theory-led discovery of a rhodium-copper (RhCu) single-atom–alloy catalyst for propane dehydrogenation to propene. Although Rh is not generally considered for alkane dehydrogenation, first-principles calculations revealed that Rh atoms disperse in Cu and exhibit low carbon-hydrogen bond activation barriers. Surface science experiments confirmed these predictions, and together these results informed the design of a highly active, selective, and coke-resistant RhCu nanoparticle catalyst that enables low-temperature nonoxidative propane dehydrogenation.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Understanding and quantifying electron beam effects during in situ TEM nanomechanical tensile testing on metal thin films

Transmission electron microscopy (TEM) imaging relies on high energy electrons for atomic scale resolution, however, the electrons themselves interact with and may alter the material being imaged. Using an in situ TEM MEMS-based nanomechanical testing technique, the effect of the electron beam (e-beam) on the deformation behavior of nanocrystalline Al and ultrafine-grained Au is investigated and quantified. We show that the e-beam enhances plastic deformation, leading to an increase in plastic strain rate and a decrease in true activation volume V* in Al (28 to 21b 3 , with b being the Burgers vector length). The e-beam has a much weaker effect on Au. The e-beam effect is not caused by knock-on damage, but rather an effective temperature increase due to additional atomic fluctuations provided by the e-beam. The effective temperature increase is larger for Al than Au. This e-beam effect does not change the deformation mechanisms, but instead accelerates the stress-driven, thermally activated plastic deformation. These experiments provide insight into the effects of the e-beam on plastic deformation in different metals and underscore the importance of understanding and quantifying these effects for proper interpretation of measured mechanical properties during in situ TEM experiments.

36 MATERIALS SCIENCE↗

Signatures of muonic activation in the Majorana Demonstrator

Experiments searching for very rare processes such as neutrinoless double-beta decay require a detailed understanding of all sources of background. Signals from radioactive impurities present in construction and detector materials can be suppressed using a number of well-understood techniques. Background from in situ cosmogenic interactions can be reduced by siting an experiment deep underground. However, the next generation of such experiments have unprecedented sensitivity goals of 10 28 years half-life with background rates of 10 -5 cts/(keV kg yr) in the region of interest. To achieve these goals, the remaining cosmogenic background must be well understood. In the work presented here, Majorana Demonstrator data are used to search for decay signatures of metastable germanium isotopes. Contributions to the region of interest in energy and time are estimated using simulations and compared to Demonstrator data. Correlated time-delayed signals are used to identify decay signatures of isotopes produced in the germanium detectors. A good agreement between expected and measured rate is found and different simulation frameworks are used to estimate the uncertainties of the predictions. The simulation campaign is then extended to characterize the background for the LEGEND experiment, a proposed tonne-scale effort searching for neutrinoless double-beta decay in 76 Ge .

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Robust Solution Verification Experiments on Nonuniform Meshes

The activities of verification, validation, and uncertainty quantification (VVUQ) provide a comprehensive means to assess the credibility of computational models. Within VVUQ, solution verification assesses numerical errors and evaluates whether the simulation is sufficiently accurate for its intended applications. As computational modeling gains traction in the development of complex, high-consequence systems, the need for robust solution verification intensifies, particularly because experimental data for these systems are often limited. This work examines improvements in the robustness of Richardson extrapolation (RE), a method commonly used in solution verification to study the discretization error of computational models using a power law. Nonuniform mesh refinement is discussed alongside other pollutants that affect the robustness of the power law model. Maximum likelihood estimation (MLE) is proposed as a robust strategy to address the uncertainty generated by nonuniform mesh refinement. An exploratory computational fluid dynamics (CFD) study of a 2D planar Poiseuille flow is conducted to determine if nonuniform mesh noise can be modeled with this MLE approach for more robust RE.

Weinmeister, Justin [ORNL] (ORCID:0000000160090237↗

Tuning Ligand–Coordinated Single Metal Atoms on TiO 2 and their Dynamic Response during Hydrogenation Catalysis

Ligand-coordinated supported catalysts (LCSCs) are of growing interest for heterogeneous single-atom catalysis. Here, the effect of the choice of organic ligand on the activity and stability of TiO 2 -supported single-atom Pt-ligand catalysts was investigated for ethylene hydrogenation. The activity of these catalysts showed a significant dependence on the choice of ligand and also correlated with coordination number for Pt-ligand and Pt-Cl - . Of the three ligands examined in this study, the one with the lowest Pt coordination number, 1,10-phenanthroline-5,6-dione (PDO), showed the lowest reaction temperature and highest reaction rate, likely due to those metal sites being more accessible to reactant adsorption. In-situ X-ray absorption spectroscopy (XAS) experiments showed that the activity also correlated with good heterolytic dissociation of hydrogen, which was supported by OH/OD exchange experiments and was the rate-determining step of the hydrogenation reaction. In these in-situ XAS experiments up to 190 degrees C, the supported Pt-ligand catalyst showed excellent stability against structural and chemical change. Instead of Pt, the PDO ligand could be coordinated with Ir on TiO 2 to form Ir LCSCs that showed slow activation by loss of Ir-Cl bonds, then excellent stability in the hydrogenation of ethylene. Furthermore, these results provide the chance to engineer ligand-coordinated supported catalysts at the single-atom catalyst level by the choice of ligand and enable new applications at relatively high temperature.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Thermal runaway mechanism of lithium-ion battery with LiNi 0.8 Mn 0.1 Co 0.1 O 2 cathode materials

Battery safety is critical to the application of lithium-ion batteries, especially for high energy density battery applied in electric vehicles. In this paper, the thermal runaway mechanism of LiNi 0.8 Co 0.1 Mn 0.1 O 2 based lithium-ion battery is illustrated. And the reaction between cathode and flammable electrolyte is proved as the trigger of the thermal runaway accident. In detail, with differential scanning calorimeter tests for battery components, the material combination contributing to thermal runaway was decoupled. Characterization with synchrotron X-ray diffraction and transmission electron microscopy with in-situ heating proved that the vigorous exothermic reaction is initiated by the liberated oxygen species. The pulse of highly active oxygen species reacted quickly with the electrolyte, accompanied with tremendous heat release, which accelerated the phase transformation of charged cathode. Also, the mechanism is verified by a confirmatory experiment when the highly active oxygen species were trapped by anion receptor, the phase transformation of the charged cathode was inhibited. Clarifying the thermal runaway mechanism of LiNi 0.8 Co 0.1 Mn 0.1 based lithium-ion battery may light the way to battery chemistries of both high energy density and high safety.

25 ENERGY STORAGE↗

Thunderstorm Activity Under Intermediate and Extreme Climate Change Scenarios

Assessing how increasing greenhouse gas concentrations may modify regional climates is an ongoing challenge. Relatively little work has examined how climate change may influence processes related to regional thunderstorm activity. This is important to consider in areas where thunderstorms are important for maintaining regional hydroclimates. Here, this study focuses on three convection-allowing climate simulations—namely, a retrospective simulation (1990–2005) and two possible climate change scenarios (2085–2100)—with domains encompassing the conterminous United States. Regional and seasonal variability is noted in the response of thunderstorm activity as measured by thresholds in simulated radar reflectivity factor in the two climate change scenarios. A decrease in thunderstorm activity is projected for the Southern Plains, whereas the Southeast and Midwest experience an increase in thunderstorm activity. An examination of environmental parameters related to thunderstorm activity reveals an overall increase in convective instability but spatially varying changes in convective inhibition.

54 ENVIRONMENTAL SCIENCES↗

Idaho National Laboratory Advanced Reactor Technologies Quality Assurance Program Plan

This QAPP covers INL ART R&D, licensing, and program support activities. QA implementing procedures will be identified for all activities to ensure work is documented and the results are capable of successfully completing a technical review by DOE. For work performed by other organizations under contract or other agreements with INL, applicable requirements will be flowed down through the contract or other agreements, but the organizations will be responsible to implement the flowed down requirements through their own specific implementing procedures. This QAPP also covers implementation of software QA (SQA) requirements for software used exclusively by INL ART. Software that is used to support multiple INL programs/projects is not covered by this QAPP; the responsibility for implementing SQA requirements for that software resides with the owners and respective managers of the software. This QAPP does not cover activities for installing and operating experiments in the Advanced Test Reactor (ATR) at INL, nor does it cover ATR facility modifications designed to meet INL ART testing needs (such as temperature, pressure, gas flow, and control systems). Those activities are controlled by the INL QAP and specific ATR implementing procedures. ATR facility management and INL ART management jointly approve experiment designs and functional system requirements. This QAPP does apply to INL ART R&D experiments that will be inserted into ATR and any support activities associated with those R&D activities. This QAPP does not cover activities for installing and operating general post irradiation examination (PIE) test equipment in Materials and Fuels Complex (MFC) facilities. Those activities are controlled by the INL QAP and MFC implementing procedures. However, this QAPP does apply to MFC facility modifications designed to meet specific INL ART testing needs. It also applies to INL ART experiments that will have PIE performed on them and any support activities associated with the PIE activities.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Genesis of Active Pt/CeO 2 Catalyst for Dry Reforming of Methane by Reduction and Aggregation of Isolated Platinum Atoms into Clusters

Atomically dispersed metal catalysts offer the advantages of efficient metal utilization and high selectivities for reactions of technological importance. Such catalysts have been suggested to be strong candidates for dry reforming of methane (DRM), offering prospects of high selectivity for synthesis gas without coke formation, which requires ensembles of metal sites and is a challenge to overcome in DRM catalysis. However, investigations of the structures of isolated metal sites on metal oxide supports under DRM conditions are lacking, and the catalytically active sites remain undetermined. Data characterizing the DRM reaction-driven structural evolution of a cerium oxide- supported catalyst, initially incorporating atomically dispersed platinum, and the corresponding changes in catalyst performance are reported. X-ray absorption and infrared spectra show that the reduction and agglomeration of isolated cationic platinum atoms to form small platinum clusters/nanoparticles are necessary for DRM activity. Density functional theory calculations of the energy barriers for methane dissociation on atomically dispersed platinum and on platinum clusters support these observations. Here the results emphasize the need for in-operando experiments to assess the active sites in such catalysts. The inferences about the catalytically active species are suggested to pertain to a broad class of catalytic conversions involving the rate-limiting dissociation of light alkanes.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Reassessing the claimed cytokinin-substituting activity of dehydrodiconiferyl alcohol glucoside

Dehydrodiconiferyl alcohol glucoside (DCG) is a phenylpropanoid-derived plant metabolite with reported cytokinin-substituting and cell-division-promoting activity. Despite its claimed activity, DCG did not trigger morphological changes in Arabidopsis seedlings nor did it alter transcriptional shifts in cell division and cytokinin-responsive genes. In reinvestigating the bioactivity of DCG in its original setting, the previously described stimulation of tobacco callus formation could not be confirmed. No evidence was found that DCG is actually taken up by plant cells, which could explain the absence of any observable activity in the performed experiments. The DCG content in plant tissue increased when feeding explants with the DCG aglycone dehydrodiconiferyl alcohol, which is readily taken up and converted to DCG by plant cells. Despite the increased DCG content, no activity for this metabolite could be demonstrated. Furthermore, our results therefore demand a reevaluation of the often-quoted cytokinin-substituting and cell-division-promoting activity that has previously been attributed to this metabolite.

59 BASIC BIOLOGICAL SCIENCES↗