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At least 163 records · Page 9
All sourcesNASA NTRSDOE OSTI
DOE OSTI2026

Hyporheic zone, river, and groundwater metagenome resolved genomes and rpS3 genes in East River Watershed, Colorado USA Summer 2020, 2021

Here we present metagenome assembled genomes (MAGs) for the bacterial and archaeal communities from water filter collected across 8 locations along the East River Watershed, CO, and 1 nearby groundwater well. The purpose was to look for connectivity and similarities across the network and to see the impact of the groundwater. As a part of Lawrence Berkeley National Laboratory (LBNL) Watershed Science Focus Area (SFA), we assessed community composition and strain similarities between the sites and we also compared it to previous metagenomic studies within the watershed looking at floodplain (Matheus Carnevali et al. 2021) and hillslope (Lavy et al. 2019) microbiomes. Here we present metagenome assembled genomes (MAGs) for the bacterial and archaeal communities from filters across 8 locations during August 2020 and July 2021. This resulted in 32 samples. The groundwater sample was sequenced at UC Berkley's QB3. The other 31 samples were sequenced at University of Maryland. Metagenomes were assembled using four autobinners and the best bins were selected using dasTool. The genomes were dereplicated at 95% with dRep and the subset of winning genomes were manually curated based on visual inspection of taxonomic profile, GC content, coverage, and a set of 51 bacterial single copy genes (BSCG), and 38 archaeal signal copy genes (ASCG). The dataset includes a zip file of 311 genomes (HZ_River_SW_MAGS_Dereplicated_95.zip). The dataset additionally includes a zipped file of ribosomal protein small subunit 3 (rpS3) proteins from the hyporheic zone and river data (rpS3_Proteins_HZ_River.zip), a metadata file used to register associated samples with IGSNs (International Generic Sample Numbers) (samples.csv), a location metadata file (locations.csv). This work was supported by the Watershed Function Science Focus Area at Lawrence Berkeley National Laboratory funded by the US Department of Energy, Office of Science, Biological and Environmental Research under Contract No. DE-AC02-05CH11231.

DNA↗
DOE OSTI2023

AmeriFlux FLUXNET-1F US-Lin Lindcove Orange Orchard

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-Lin Lindcove Orange Orchard. This is the FLUXNET version of the carbon flux data for the site US-Lin Lindcove Orange Orchard produced by applying the standard ONEFlux (1F) software. Site Description - The experimental site was a citrus orchard about three km west of the UC Lindcove Research and Experiment Station. The site is characterized by a Mediterranean climate typical of Central California, with warm dry summers and cool wet winters. The soil texture for the upper horizon (0-33 cm) was loam with a particle size distribution of 42% sand, 38% silt, and 20% clay (Kearney Ag Center). Soil pH was 7.4 (Valley Tech Soil Agricultural Laboratory Services). The orchard was drip-irrigated with water applied twice per week in the warm season to ensure water avail- ability close to field capacity. The site was kept clean from understory vegetation and mechanical pruning operations took place twice a year to limit the size ofthe orange trees for harvesting and site maintenance. The block of trees in which the tower and instruments were located was ‘Valencia’ orange on trifoliate rootstock, with a planting date in the 1960’s. The square 4 ha block had dimensions of 200 m NeS and EeW. At the end of the study, we harvested a ‘Valencia’ citrus tree from within the study block to measure citrus leaf area index (LAI) and biomass density. The tree height was 3.7 m as measured with a telescoping pole. We measured canopy radii in the four cardinal directions to calculate a planar area (as seen from above) of 12.2 m2. The mean specific leaf area (SLA) of citrus leaves was 85.4 cm2 g-1 obtained by measuring leaf area of five groups of leaf samples with a LiCor Leaf area meter (mod. LI-3100C) followed by drying and weighing. LAI for the orchard was 3.00, derived using the SLA value and the total dry mass of leaves from the harvested tree, multiplied by the plant population of 237 plants per ha as obtained from spacing measurements and Google Maps imagery.

Fares, Silvano↗
DOE OSTI2025

AmeriFlux US-SHC Sagehen Creek Field Station

This is the AmeriFlux version of the carbon flux data for the site US-SHC Sagehen Creek Field Station. Site Description - This tower is located at the Sagehen Creek Field Station of UC Berkeley. The 30m tower near the station has been used for meteorological measurements since at least 2006 and EC flux measurements were started in late June 2017. The area is dominated by coniferous forest with patches of grassland in between.

Wolf, Sebastian [ETH Zurich]↗
DOE OSTI2025

AmeriFlux FLUXNET-1F US-SHC Sagehen Creek Field Station

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-SHC Sagehen Creek Field Station. This is the FLUXNET version of the carbon flux data for the site US-SHC Sagehen Creek Field Station produced by applying the standard ONEFlux (1F) software. Site Description - This tower is located at the Sagehen Creek Field Station of UC Berkeley. The 30m tower near the station has been used for meteorological measurements since at least 2006 and EC flux measurements were started in late June 2017. The area is dominated by coniferous forest with patches of grassland in between.

Wolf, Sebastian [ETH Zurich]↗
DOE OSTI2020

The energetics and dynamics of confinement in flexible frameworks and molecular confinement

This project is part of an ongoing and long-term collaboration among Alexandra Navrotsky (who moved recently from UC Davis to Arizona State University), Nancy Ross at Virginia Tech, and Brian Woodfield at Brigham Young University (BYU) on the thermodynamics and lattice dynamics of nanophase and porous materials. Navrotsky emphasizes energetics of formation and guest molecule sorption by ambient and high temperature calorimetry, Woodfield contributes cryogenic heat capacity measurements, and Ross uses inelastic neutron scattering, X-ray and neutron diffraction, and high pressure studies to probe lattice dynamics and phase transitions. Porous frameworks form the chemical and structural basis for critical technologies in separations, catalysis, nuclear waste containment and biomedical applications. Hundreds of zeolites and metal organic frameworks (MOFs) have been synthesized, and their ability to separate and store hydrogen, methane and carbon dioxide has been investigated both experimentally and theoretically. Nevertheless, a fundamental and systematic molecular-level understanding of the thermodynamic and structural factors governing the stability and guest-host interactions in these materials lags behind focused studies of specific systems. Because the guest molecules interact with each other and with the host framework, molecular confinement is a finely balanced and complex phenomenon. The ability of the guest molecules to bind and diffuse through the pores is determined by the nature of the host framework which, in turn, responds to the nature and concentration of guest molecules and to pressure and temperature. The work explores how framework flexibility, tailored by structure, composition, temperature and pressure, is a general phenomenon, similar in nature but variable in extent, in both zeolites and MOFs and is part of a free energy landscape in which framework-guest interactions, pressure, and temperature result in changes in framework geometry and, in some cases, phase transitions. These subtle and/or pronounced changes in lattice geometry, energetics, and dynamics can play a decisive role in confinement and in differentiating the binding of molecules of similar size.

36 MATERIALS SCIENCE↗
DOE OSTI2020

Beam-ion Studies in NSTX and NSTX-U (Final Technical Report)

The confinement of high energy "fast ions" is crucial for the success of magnetic fusion as a practical energy source. The research performed by UC Irvine on NSTX and NSTX-U provided new information about this important topic in the configuration known as a "spherical tokamak." Injected neutral beams provided the fast ions (also known as "beam ions"). There were five overarching goals of the research. One objective was to measure the confinement of beam ions in order to ascertain if they were accomplishing their desired purpose of transferring their energy to the bulk plasma. A second goal was to better understand instabilities that are driven unstable by the fast ions. A related goal was to use the similarities and differences between NSTX and the DIII-D conventional tokamak to better understand the fast-ion driven instabilities. A fourth goal was to develop new instruments to measure fast ions and techniques that facilitate analysis of the data. The fifth objective was to measure and understand acceleration of beam ions by RF waves. Much was accomplished in all of these five areas. In the first, it was shown that the large magnetic moment of the beam ions did not harm confinement but instabilities known as the "sawtooth" and "long-lived mode" do. In the second area, much attention was devoted to the fast-ion instabilities known as "Alfvén eigenmodes." In particular, Alfvén eigenmode "avalanches" can cause ~ 30% of the fast ions to be lost in a single explosive burst. The comparative studies with DIII-D showed that an instability discovered on NSTX is also important in conventional tokamaks. In the fourth category, several instruments were developed, a number of effects that complicate interpretation of the data were understood, and progress toward a new method to infer the fast-ion distribution function from the data was made. In the fifth category, the measured profile of accelerated fast ions was initially much broader than theoretical predictions but subsequent improvements in the theoretical modeling achieved good agreement with the data.

43 PARTICLE ACCELERATORS↗
DOE OSTI2020

Programmable Dynamic Self-Assembly of DNA Nanostructures (Final Technical Report)

This technical report summarizes our research toward the synthesis of active biomolecular materials that take advantage of the biological properties of DNA and RNA, but can operate in non-biological contexts. Our approach takes inspiration from the dynamic assembly and disassembly of cytoskeletal filaments inside cells, and focuses on the generation of artificial filaments with comparable adaptation and responsiveness. We report the construction of DNA nanotube systems that assemble and disassemble reversibly in response to a variety of molecular stimuli including other nucleic acids (DNA and RNA), enzymes, and pH, as well as our progress on developing a reaction network framework to regulate self-assembly. Our DNA polymers are active in that they rely on the programmable energetics of hybridization and on the kinetics of enzymatic reactions to perform assembly and disassembly. Results include experiments and computational models. The research described here was performed between June 15, 2016 and June 15, 2019 at the University of California at Riverside with the support of the collaborative award DE-SC0010595 to PI Elisa Franco at UC Riverside and PI Rebecca Schulman at Johns Hopkins. The report focuses on the research performed by the team of PI Franco. The report also details work performed during a no-cost extension (June 15, 2019 - December 15, 2019) awarded to PI Guillermo Aguilar and PI Franco.

36 MATERIALS SCIENCE↗
DOE OSTI2020

The Mu2e Experiment (Final Technical Report)

This is the final technical report for the initial two year funding period to start a new collaboration group at the University of California Davis for the Mu2e Experiment at Fermilab. The goal if the Mu2e Experiment is to search for the conversion to an electron of a muon that has been captured by an aluminum nucleus. While this process is effectively forbidden in the Standard Model, it is a virtually universal feature of models beyond the Standard Model. Mu2e will probe the reaction with a sensitivity that is roughly four orders of magnitude better than the best previous measurement. This range of sensitivity probes most of the parameters space of supersymmetry, and any signal will be unambigious proof of physics beyond the Standard Model. Professor Prebys was one of the founding members and first spokespersons of the Mu2e Experiment during his time af Fermilab. He came to UC Davis in 2017 with the goal of starting a Mu2e collaborating group here, and this grant has funded that effort. Specifically, in addition to summer salary, it has supported a graduate student and a postdoc, both of whom are now permanently stationed at Fermilab. During this time, their work has focused primarily on the understanding to the formation of the proton bunches in Fermilab Recycler, as this is critical to the experiment. This has included both measurements and simulations.

43 PARTICLE ACCELERATORS↗
DOE OSTI2020

Uncertainty Quantification for Capacity Expansion Planning

This report quantifies the uncertainty in output decisions from a Capacity Expansion Planning (CEP) model. The need to understand how uncertainties within CEP models and modeling assumptions affect Quantities of Interest (QoIs) such as expansion and operating costs, as well as expansion decisions remains an ongoing challenge in scientific research and industrial operations. This area of research is particularly important for models which seek to capture how large networks will evolve and operate under increased sources of variable generation, i.e., higher penetration of renewable technologies such as solar and wind generators. Uncertainty quantification (UQ) of CEP models which estimate expansion costs and decisions, and production cost models which estimate operating costs and dispatch decisions, is a key focus of research at NREL. The Regional Energy Deployment System (ReEDS) represents a state-of-the-art CEP model and considers a range of possible grid evolutions in an attempt to identify key drivers, ramifications, and decisions which contribute to better informed investment and policy decisions. However, research to quantify how uncertainties and model assumptions, such as unit commitment (UC), within ReEDS may be affecting its outputs remains challenging due to to size and complexity of the model

24 POWER TRANSMISSION AND DISTRIBUTION↗
DOE OSTI2020

Status Report on Development of a Cask to Enable Pulsed Neutron Characterization of Irradiated Fuel

We present the design of a shielding cask that allows pulsed neutron characterization of irradiated fuel rodlets prior to their destructive examination in hot cells. The goal is to provide complementary and informative measurements that will inform subsequent hot cell PIE examinations by identifying typical and atypical regions with respect to microstructure, tomographic data, or isotope densities. Time-of-flight neutron diffraction has the potential to offer efficient, non-destructive and non-contact microstructural characterization of irradiated fuel pins with spatial resolution of 1 mm3 to 1 cm3 while for energy-resolved neutron imaging (and by extension tomography) a resolution of 100 μm was demonstrated. The potential results include crystallinity vs. amorphous volumes and microstructural information such as phase compositions and textures from the diffraction data as well as distances (e.g. pellet to cladding), cracks, and isotopic distributions of minor actinides, fission products as well as fission gas partial pressures e.g. in the plenum from energy resolved neutron imaging. The capability will identify regions of atypical behavior and provide cost effective bulk characterization of entire samples prior to destructive evaluation in hot cells. This effort is a collaboration between LANL, INL, ORNL, and UC Berkeley. A key facet of the initiative is the ability to cost effectively ship irradiated fuels from INL to the pulsed spallation neutron source at LANSCE. The irradiated fuel would be loaded in the custom designed cask (designated RaMHaM) at INL hot cells which then could be shipped in a BRR Type B shipment container between INL and LANL. No hot cell is required after the loading of the sample at INL in the pathway laid out in this report, greatly simplifying handling at LANL.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2020

Development of a Reference Model for Molten-Salt-Cooled Pebble-Bed Reactor Using SAM

To support the development and utilization of the SAM code for fluoride-salt-cooled high-temperature pebble-bed reactor (PB-FHR) safety analysis and licensing, an effort was devoted to developing reference models for PB-FHR primary loop and the reactor cavity cooling system (RCCS). A reference standard problem of a prototypical reactor design is foundational to NRC and industry to verify the adequacy of computer codes and evaluation models for a specific reactor type. The SAM code was enhanced for the reference PB-FHR model development, including a 1D-3D flow coupling scheme and conjugate heat transfer between porous media and solid structures. The reference FHR primary loop model was developed based on the UC Berkeley Mk1 FHR design with additional design features from the Kairos Power’s KP-FHR core. The PB-FHR core is modeled by a two-dimensional porous medium while the rest of the primary loop is represented by a SAM one-dimensional model. A SAM one-dimensional primary loop model was also developed for comparison using a single channel approach for the reactor core. Furthermore, the water-based NSTF cavity was modeled using SAM multi-dimensional flow module, to assist in evaluating SAM capabilities of modeling the emergency heat removal systems relying on RCCS concepts.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗
DOE OSTI2021

National Security & International Studies (Q1 FY2021 Newsletter)

Happy New Year to everyone. Activity in the office continues to be at a high pace with the addition of the Strategic Analyses and Assessments (SAA) Office from ALDX, and the Mission Integration (MI) Office (formerly known as Nuclear and Military [NMA] Office) from DDW. We are working closely to optimize the impact of our combined offices. In this issue of our newsletter, we will highlight programs from the SAA Office portfolio, delve into our interactions with the Project on Nuclear Issues (PONI) program from CSIS, introduce you to new staff in NSIS and review a new joint postdoc program with the UC Institute on Global Conflict and Cooperation and the Center for Global Security Research at LLNL. I also encourage you to take a look at the new NSIS website for more information on the office. Finally, the NSIS office will soon be kicking off a webinar series on starting with topics of interest to the Director’s Strategic Resilience Initiative and will grow beyond that. Stay tuned for more information. --John Scott, Acting Office Director, NSIS

99 GENERAL AND MISCELLANEOUS↗
DOE OSTI2021

Conference Grant Report

The University of California San Diego (UCSD), hosted the High Energy-Density Science Summer School from July 28 – August 11, 2019 on the UC San Diego campus. The goal of the Summer School series was to introduce new talent to the breadth of the U.S. High Energy Density Science (HEDS) community through lectures, engaging workshops, and discussion sessions with leaders in academia and the national laboratories. The objectives are to inspire young scientists to pursue graduate and professional careers in the fields of high energy density science, teach them fundamental HED science and critical skills, and grant them the opportunity to network with leading academic and national laboratory researchers. Our focus was to attract promising early-career students from across the country.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2021

Hamilton: Flexible, Open Source $10 Wireless Sensor System for Energy Efficient Building Operation

Sensors for improving building performance are rapidly populating the market, driven in part by the drive to reduce greenhouse gas emissions resulting from energy production as well as improve the interior environment for healthy and more productive spaces. UC Berkeley has led wireless sensor development over the past 25 years (e.g., Telos mote), with the Hamilton (named after Alexander Hamilton on the US $10 bill) as the most recent. The Hamilton sensor was designed as a low-cost high-performance sensor that is modular and interoperable. The objective of the Hamilton project was to create, evaluate and establish the technological foundations for secure and easy to deploy building energy efficiency applications utilizing pervasive, low-cost wireless sensors integrated with traditional Building Management Systems (BMS), consumer-sector building components, and powerful data analytics. The project included iterative hardware design, incorporating a high-performance database (BTrDb, http://btrdb.io/), creating and iterating the development of secure data middleware (BOSSwave, WAVE/WAVEMQ), working with and pushing the development of an open-source tiny operating system RiotOS, and implementing and improving protocols such as Thread/OpenThread and TCP/IP. The hardware benefited from careful design to drive down the cost; the design included a System-on-a-Chip (SoC), chip antenna, single crystal and five passive components. Careful design of the operating system created a low-power design to enable a long life with small batteries. The hardware included several sensors: temperature, radiant temperature, relative humidity, magnetometer, accelerometer, and light, with an optional occupancy (Passive InfraRed) sensor. The project was the basis of several applications, both internal to the research team and other researchers and professionals at other institutions. Several applications used the sensor hardware as the basis for other complex devices. Other applications used the sensors to improve building performance through interoperating with the building Heating Ventilation and Air-Conditioning (HVAC) system, such as using occupancy and/or distributed temperature sensing to reduce HVAC zone energy while still providing thermal comfort and to reduce peak loads in small commercial buildings. We demonstrated cloud-based energy analytics, implemented a schedule and a Model Predictive Controller in a small commercial building to optimize HVAC energy, occupancy and electricity price. Initial integration of these technological innovations was performed through the creation of execution containers containing the WAVE agent and various driver, proxy, or building system function logic. The research added to the understanding of efficient sensor hardware, secure middleware, time-series data management (high performance database), efficient communication protocols, and interoperating with applications and building systems. The project showed the technical effectiveness and economic feasibility of creating a low-cost, modular, and easy-to-deploy sensor. Through conversations with multiple end users, the research team discovered that many customers wanted data management and services in addition to the sensors. HamiltonIOT developed packages of sensors, border router, and data services to provide a seamless “plug-and-play” sensor deployment. Some customers were willing to pay for higher quality sensors (such as light); some customers wanted a robust enclosure (waterproof).

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
DOE OSTI2021

Selection and Characterization of Surrogate Material for Developing Zr Barrier Coatings for Uranium Nitride Particles

In support of UC 1-x N x fuel kernels (~ 800 micrometer diameter) development work ongoing at Oak Ridge national laboratory (ORNL), where the fuel kernels will be embedded inside a possible zirconium based matrix, Argonne National Laboratory (ANL) is contributing to help develop a robust metal diffusion barrier coating. Zirconium nitride (ZrN) and Zirconium oxide (ZrO2) were selected as possible diffusion barrier candidates, and the atomic layer deposition (ALD) has been chosen as a candidate technology to deposit the film. Development of such a barrier coating with the ALD process entails significant number of trials to study relevant parameters. Therefore, to prevent needless wastage, instead of coating directly over fuel kernels, a surrogate candidate with similar dimensions and physical properties were been selected and coated to develop the diffusion barrier coating.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2021

Laser Network US Experiments at the University of Texas at Austin

Under Subcontract B638654, The University of Texas at Austin (UT Austin) Center for High Energy Density Science supported three Laser Network US experiments and conducted upgrade planning for the Texas Petawatt Laser Facility. For the experiment “Investigation of the physics of MeV X-ray and particle generation using Compound Parabolic Concentrators” led by Dr. Andrew Mackinnon of Lawrence Livermore National Laboratory, UT Austin provided postdoctoral associate support in the person of Dr. Ganesh Tiwari. For the experiments “Megatesla magnetic fields and enhanced gamma-ray beam generation” led by Hans Rinderknecht of LLE, University of Rochester (experiment) and Alexey Arefiev of UC San Diego (theory) and “High resolution imaging of resonately accelerated electrons under tight focusing” led by Deepak Kumar of ELI-Beamlines, Czech Republic, UT Austin provided the Texas Petawatt Laser staff and a prorated share of the materials and supplies approximately equal to the average of those required for one 5-week experimental campaign. Summaries of these three experiments are provided in this report. Two staff members were hired—Dr. Sandra Bruce at 40% and Dr. Erhard Gaul at 50% time—to support Texas Petawatt Laser maintenance and operations and to plan for the Texas Relativistic Intensity Ultrafast Multi-beam Plasma Facility (TRIUMPF).

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2021

Integrated End-to-end Performance Prediction and Diagnosis for Extreme Scientific Workflows (IPPD) (Final Report)

This report details the accomplishments from the ASCR funded project “Integrated End-to-end Performance Prediction and Diagnosis for Extreme Scientific Workflows” under the award numbers FWP-66406 and DE-SC0012630, with a focus on the UC San Diego (Award No. DE-SC0012630) part of the accomplishments. We refer to the project as IPPD. The main activities of IPPD were centered on the development and integration of provenance information to capture empirically workflow information and identify the sources of bottlenecks as well as variability, and modeling and simulation to provide insights and predictively explore multiple scenarios for development of advanced techniques for optimization of resources and workflow execution. After a Phase I of the project, a Phase II effort focused on three major aspects: a) observe how data is generated, distributed, and used; b) analyze how data is (repeatedly) consumed with a focus both on repeated patterns and anomalies; and c) explore how to optimize data motion. The project leveraged and extended our existing tools with new research and demonstrated our work on the Belle II workflow suite as well as on workflows from NSLS-II.

97 MATHEMATICS AND COMPUTING↗