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At least 163 records · Page 9

AutoAtlas: Neural Network for 3D Unsupervised Partitioning and Representation Learning

Here we present a novel neural network architecture called AutoAtlas for fully unsupervised partitioning and representation learning of 3D brain Magnetic Resonance Imaging (MRI) volumes. AutoAtlas consists of two neural network components: one neural network to perform multi-label partitioning based on local texture in the volume, and a second neural network to compress the information contained within each partition. We train both of these components simultaneously by optimizing a loss function that is designed to promote accurate reconstruction of each partition, while encouraging spatially smooth and contiguous partitioning, and discouraging relatively small partitions. We show that the partitions adapt to the subject specific structural variations of brain tissue while consistently appearing at similar spatial locations across subjects. AutoAtlas also produces very low dimensional features that represent local texture of each partition. We demonstrate prediction of metadata associated with each subject using the derived feature representations and compare the results to prediction using features derived from FreeSurfer anatomical parcellation. Since our features are intrinsically linked to distinct partitions, we can then map values of interest, such as partition-specific feature importance scores onto the brain for visualization.

42 ENGINEERING↗

Altering the substitution and cross‐linking of glucuronoarabinoxylans affects cell wall architecture in Brachypodium distachyon

Summary The Poaceae family of plants provides cereal crops that are critical for human and animal nutrition, and also, they are an important source of biomass. Interacting plant cell wall components give rise to recalcitrance to digestion; thus, understanding the wall molecular architecture is important to improve biomass properties. Xylan is the main hemicellulose in grass cell walls. Recently, we reported structural variation in grass xylans, suggesting functional specialisation and distinct interactions with cellulose and lignin. Here, we investigated the functions of these xylans by perturbing the biosynthesis of specific xylan types. We generated CRISPR/Cas9 knockout mutants in Brachypodium distachyon XAX1 and GUX2 genes involved in xylan substitution. Using carbohydrate gel electrophoresis, we identified biochemical changes in different xylan types. Saccharification, cryo‐SEM, subcritical water extraction and ssNMR were used to study wall architecture. Bd XAX1A and Bd GUX2 enzymes modify different types of grass xylan. Brachypodium mutant walls are likely more porous, suggesting the xylan substitutions directed by both Bd XAX1A and GUX2 enzymes influence xylan‐xylan and/or xylan–lignin interactions. Since xylan substitutions influence wall architecture and digestibility, our findings open new avenues to improve cereals for food and to use grass biomass for feed and the production of bioenergy and biomaterials.

59 BASIC BIOLOGICAL SCIENCES↗

Engineering Solid Electrolyte Interphase Composition by Assessing Decomposition Pathways of Fluorinated Organic Solvents in Lithium Metal Batteries

Studies have shown fluorinated electrolyte solvents can form desirable solid electrolyte interphase (SEI) in lithium metal batteries. In this study, we develop a detailed mechanistic understanding of two high performing electrolytes, Fluoroethylene Carbonate (FEC) and Difluoroethylene Carbonate (DFEC) to demonstrate minimal structural variations can lead to different decomposition products, and thereby the nature of the SEI. Using density functional theory (DFT) calculations, we find different initial bond-breaking mechanisms between FEC and DFEC. We develop free energy diagrams for the decomposition pathways including both electrochemical and chemical steps. Using the computational Li electrode, we identify the largest limiting potential of 1.77 V for FEC decomposition, associated with the formation of lithium fluoride, lithium oxide and FEC oligomers, and 1.53 V for DFEC, which correspond to the formation of polymerized vinylene carbonate and lithium fluoride. We suggest the formation of oligomers in the case of FEC instead of long polymers may lead to better SEI compactness. We also demonstrate the SEI components of FEC and DFEC are not stable on typical cathode voltage (3.87 V). This study presents a unified electrocatalytic perspective on SEI formation and decomposition.

25 ENERGY STORAGE↗

Reaction Diffusion Modelling of 3D Pillar Electrodes in Single-Catalyst CO 2 Reduction Cascades

Effective electrochemical CO 2 reduction to liquid fuels requires that the local catalytic environment facilitates the desired reactivity, yet a microscopic understanding of this environment is difficult to achieve from experiment alone. In this work, a 3D reaction-diffusion model was developed to explore the effects of electrode surface area and local geometry on the performance of a heterogeneous catalyst that performs a two-step CO 2 reduction cascade reaction to CO and then CH 3 OH under aqueous conditions. Kinetic parameters for the model were inspired by experimental results using a cobalt phthalocyanine (CoPc) catalyst. Three-dimensional architectures composed of arrays of square pillars with varying dimensions and either smooth or periodically modulated surfaces were tested, revealing the extent to which geometry modulates the performance of the cascade reactions. Although structural variations modulate local concentration gradients, we find that electrochemically active surface area predominantly governs the overall cascade reaction. Moreover, the results suggest that supersaturation of CO, with concentrations up to ten-fold higher than the equilibrium solubility limit, might be critical for more efficient conversion to CH 3 OH. For any given geometry, the spatially averaged ratio of [CO] to [CO 2 ] is dictated by the electrochemically active surface area and determines the yield of CH 3 OH. For a fixed surface area, geometries that spatially confine the electrolyte yield moderate local [CO] to [CO 2 ] ratios within small volumes. In contrast, less confining geometries result in a broader distribution of local ratios spread over larger volumes, with both configurations yielding the same spatially averaged [CO] to [CO 2 ] ratio. These insights provide valuable design principles—highlighting the critical importance of surface area and possibly CO supersaturation—for engineering advanced electrode architectures that leverage intermediate trapping and CO supersaturation to enhance overall performance in tandem CO 2 reduction systems.

COMSOL↗

Autodocumentation

Automated documentation systems with expanded capabilities for reusing existing programs are considered by allowing a relatively inexpensive determination of program capabilities. A theoretical approach to such a system is proposed. Tree structure variations are examined, along with assignment statements, conditional branches, loops, and an automated analyzer.

Arnold, J.↗

Isomer effects on polyimide properties

The effect of structure variation on the solubility and glass-transition temperature of polyimide polymers is investigated. The addition of alkyl substituents to an aromatic ring in the polymer molecule, the reduction in the number of imide rings per average polymer chain-length, and a variation in the symmetry of the polymer molecule are studied. The synthesis of key intermediates for the preparation of the monomers required in this investigation is reported along with progress made in the synthesis of polyimide-precursor amines that contain functional groups to allow for post-cure cross-linking.

Stump, B. L.↗

A comparison of motor submodels in the optimal control model

Properties of several structural variations in the neuromotor interface portion of the optimal control model (OCM) are investigated. For example, it is known that commanding control-rate introduces an open-loop pole at S=O and will generate low frequency phase and magnitude characteristics similar to experimental data. However, this gives rise to unusually high sensitivities with respect to motor and sensor noise-ratios, thereby reducing the models' predictive capabilities. Relationships for different motor submodels are discussed to show sources of these sensitivities. The models investigated include both pseudo motor-noise and actual (system driving) motor-noise characterizations. The effects of explicit proprioceptive feedback in the OCM is also examined. To show graphically the effects of each submodel on system outputs, sensitivity studies are included, and compared to data obtained from other tests.

Lancraft, R. E.↗

Absorption models for low-frequency variability in compact radio sources

The consequences of the most plausible version of the absorption model for low-frequency variability in compact extragalactic radio sources are considered. The general restrictions placed on such a model are determined, and observational tests are suggested that can be used either to support the model or to discriminate among its various versions. It is shown that low-frequency variability in compact radio sources can be successfully explained by a class of models in which the flux is modulated by changes in free-free optical depth within an intervening ionized medium. Two versions of such a model are distinguished, one involving large changes in optical depth and the other, small changes. It is noted that while absorption effects are capable of causing rapid flux and structural variations at centimetric wavelengths, the models predict detailed behavior that is in direct conflict with observational data.

Marscher, A. P.↗

Achievable flatness in a large microwave power transmitting antenna

A dual reference SPS system with pseudoisotropic graphite composite as a representative dimensionally stable composite was studied. The loads, accelerations, thermal environments, temperatures and distortions were calculated for a variety of operational SPS conditions along with statistical considerations of material properties, manufacturing tolerances, measurement accuracy and the resulting loss of sight (LOS) and local slope distributions. A LOS error and a subarray rms slope error of two arc minutes can be achieved with a passive system. Results show that existing materials measurement, manufacturing, assembly and alignment techniques can be used to build the microwave power transmission system antenna structure. Manufacturing tolerance can be critical to rms slope error. The slope error budget can be met with a passive system. Structural joints without free play are essential in the assembly of the large truss structure. Variations in material properties, particularly for coefficient of thermal expansion from part to part, is more significant than actual value.

Ried, R. C.↗

Ordered mixed-layer structures in the Mighei carbonaceous chondrite matrix

High resolution transmission electron microscopy of the Mighei carbonaceous chondrite matrix has revealed the presence of a new mixed layer structure material. This mixed-layer material consists of an ordered arrangement of serpentine-type (S) and brucite-type (B) layers in the sequence SBBSBB. Electron diffraction and imaging techniques show that the basal periodicity is approximately 17 A. Discrete crystals of SBB-type material are typically curved, of small size (less than 1 micron) and show structural variations similar to the serpentine group minerals. Mixed-layer material also occurs in association with planar serpentine. Characteristics of SBB-type material are not consistent with known terrestrial mixed-layer clay minerals. Evidence for formation by a condensation event or by subsequent alteration of pre-existing material is not yet apparent.

Mackinnon, I. D. R.↗

Structure-property effects of tantalum additions to nickel-base superalloys

The characterization of the effect of Ta on the structure of Ni base superalloys, the determination of the effects of Ta (structure) variations on the mechanical, thermal, and oxidation behavior, and the identification of alloying elements which have potential as substitutes for Ta are investigated. Mar M247 type alloys are emphasized; nominal and analyzed compositions of ten alloys under study are given. X-ray and composition analysis are being used to determine the partitioning of alloying elements between gamma, gamma primes, and MC (cubic) as a function of Ta content. The diffusional interactions of the Mar M247-type alloys with as cast beta + gamma alloys are studied to determine the effects of Ta on alloy/coating degradation.

Heckel, R. W.↗

The upper mantle beneath the Cascade Range: A comparison with the Gulf of California

Seismograms from 22 earthquakes along the northeast Pacific rim recorded in southern California form the data set for investigation of the upper mantle beneath the Cascade Range-Juan de Fuca region, a transitional area encompassing both very young ocean floor and a continental margin. These data consist of 853 seismograms (6 deg delta 42 deg) which produce 1068 travel times and 40 ray parameter estimates. These data are compared directly to another large suite of records representative of structure beneath the Gulf of California, an active spreading center. The spreading center model, GCA, was used as a starting point in WKBJ synthetic seismogram modeling and perturb GCA until the northeast Pacific data are matched. Application of wave field continuation to these two groups of data provides checks on model's consistency with the data as well as an estimate of the resolvability of differences between the two areas. Differences between the models derived from these two data sets are interpretable in terms of lateral structural variation beneath the two regimes.

Walck, M. C.↗

S-P wave travel time residuals and lateral inhomogeneity in the mantle beneath Tibet and the Himalaya

S-P wave travel time residuals were measured in earthquakes in Tibet and the Himalaya in order to study lateral inhomogeneities in the earth's mantle. Average S-P residuals, measured with respect to Jeffrey-Bullen (J-B) tables for 11 earthquakes in the Himalaya are less than +1 second. Average J-B S-P from 10 of 11 earthquakes in Tibet, however, are greater than +1 second even when corrected for local crustal thickness. The largest values, ranging between 2.5 and 4.9 seconds are for five events in central and northern Tibet, and they imply that the average velocities in the crust and upper mantle in this part of Tibet are 4 to 10 percent lower than those beneath the Himalaya. On the basis of the data, it is concluded that it is unlikely that a shield structure lies beneath north central Tibet unless the S-P residuals are due to structural variations occurring deeper than 250 km.

Molnar, P.↗

Direct simulation of three-dimensional flow about the AFE vehicle at high altitudes

Three-dimensional hypersonic rarefied flow about the Aeroassist Flight Experiment (AFE) vehicle was studied using the direct simulation Monte Carlo (DSMC) technique. Results are presented for the transitional flow regime encountered between 120 and 200 km altitudes with a reentry velocity of 9.92 km/s. In the simulations, a five-species reacting real-gas model that accounts for internal energies (rotational and vibrational) is used. The results indicate that the transitional effects are significant even at an altitude of 200 km and influence the overall vehicle aerodynamics. For the cases considered, the aerodynamic coefficients, surface pressures, convective heating, and flow field structure variations with rarefaction effects are presented.

Celenligil, M. Cevdet↗

Confirmation of dust clusters in the coma of Comet Halley

Measurements from the Ducma dust counter and mass analyzer on the Vega spacecraft are compared with those from the SP-1 sensor on the same spacecraft. It is shown that the sequence of pulses recorded by the SP-1 instruments show deviations from a random distribution. Some of the nonrandom sequences observed by SP-1 are in the same time intervals as the clusters observed by the Ducma instrument. The results support the analysis of Ducma data which showed highly structured variations of dust intensity through the coma and large fluxes of low mass particles extending to great distances beyond the coma (Simpson et al., 1986).

Simpson, J. A.↗

Direct simulation of three-dimensional flow about the AFE vehicle at high altitudes

Three-dimensional hypersonic rarefied flow about the Aeroassist Flight Experiment (AFE) vehicle was studied using the direct simulation Monte Carlo (DSMC) technique. Results are presented for the transitional flow regime encountered between 120 and 200 km altitudes with a reentry velocity of 9.92 km/s. In the simulations, a five-species reacting real-gas model that accounts for internal energies (rotational and vibrational) is used. The results indicate that the transitional effects are significant even at an altitude of 200 km and influence the overall vehicle aerodynamics. For the cases considered, the aerodynamic coefficients, surface pressures, convective heating, and flow field structure variations with rarefaction effects are presented.

Celenligil, M. Cevdet↗