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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 163 records · Page 9
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Diabatic Eddy Forcing Increases Persistence and Opposes Propagation of the Southern Annular Mode in MERRA-2

Abstract As a dominant mode of jet variability on subseasonal time scales, the Southern Annular Mode (SAM) provides a window into how the atmosphere can produce internal oscillations on longer-than-synoptic time scales. While SAM’s existence can be explained by dry, purely barotropic theories, the time scale for its persistence and propagation is set by a lagged interaction between barotropic and baroclinic mechanisms, making the exact physical mechanisms challenging to identify and to simulate, even in latest generation models. By partitioning the eddy momentum flux convergence in MERRA-2 using an eddy–mean flow interaction framework, we demonstrate that diabatic processes (condensation and radiative heating) are the main contributors to SAM’s persistence in its stationary regime, as well as the key for preventing propagation in this regime. In SAM’s propagating regime, baroclinic and diabatic feedbacks also dominate the eddy–jet feedback. However, propagation is initiated by barotropic shifts in upper-level wave breaking and then sustained by a baroclinic response, leading to a roughly 60-day oscillation period. This barotropic propagation mechanism has been identified in dry, idealized models, but here we show evidence of this mechanism for the first time in reanalysis. The diabatic feedbacks on SAM are consistent with modulation of the storm-track latitude by SAM, altering the emission temperature and cloud cover over individual waves. Therefore, future attempts to improve the SAM time scale in models should focus on the storm-track location, as well as the roles of the cloud and moisture parameterizations. Significance Statement As they circumnavigate the planet, the tropospheric jet streams slowly drift north and south over about 30 days, longer than the normal limit of weather prediction. Understanding the source of this “memory” could improve our knowledge of how the atmosphere organizes itself and our ability to make long-term forecasts. Current theories have identified several possible internal atmospheric interactions responsible for this memory. Yet most of the theories for understanding the jets’ behavior assume that this behavior is only weakly influenced by atmospheric water vapor. We show that this assumption is not enough to understand jet persistence. Instead, clouds and precipitation are more important contributors in reanalysis data than internal “dry” mechanisms to this memory of the Southern Hemisphere jet.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2017

Future loss of Arctic sea-ice cover could drive a substantial decrease in California’s rainfall [Seasonally ice-free Arctic favors dry California]

From 2012 to 2016, California experienced one of the worst droughts since the start of observational records. As in previous dry periods, precipitation-inducing winter storms were steered away from California by a persistent atmospheric ridging system in the North Pacific. Here in this paper we identify a new link between Arctic sea-ice loss and the North Pacific geopotential ridge development. In a two-step teleconnection, sea-ice changes lead to reorganization of tropical convection that in turn triggers an anticyclonic response over the North Pacific, resulting in significant drying over California. These findings suggest that the ability of climate models to accurately estimate future precipitation changes over California is also linked to the fidelity with which future sea-ice changes are simulated. We conclude that sea-ice loss of the magnitude expected in the next decades could substantially impact California’s precipitation, thus highlighting another mechanism by which human-caused climate change could exacerbate future California droughts.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

An epigenetic gene silencing pathway selectively acting on transgenic DNA in the green alga Chlamydomonas

Abstract Silencing of exogenous DNA can make transgene expression very inefficient. Genetic screens in the model alga Chlamydomonas have demonstrated that transgene silencing can be overcome by mutations in unknown gene(s), thus producing algal strains that stably express foreign genes to high levels. Here, we show that the silencing mechanism specifically acts on transgenic DNA. Once a permissive chromatin structure has assembled, transgene expression can persist even in the absence of mutations disrupting the silencing pathway. We have identified the gene conferring the silencing and show it to encode a sirtuin-type histone deacetylase. Loss of gene function does not appreciably affect endogenous gene expression. Our data suggest that transgenic DNA is recognized and then quickly inactivated by the assembly of a repressive chromatin structure composed of deacetylated histones. We propose that this mechanism may have evolved to provide protection from potentially harmful types of environmental DNA.

Neupert, Juliane↗
DOE OSTI2023

How do North American weather regimes drive wind energy at the sub-seasonal to seasonal timescales?

Abstract There has been an increasing need for forecasting power generation at the subseasonal to seasonal (S2S) timescales to support the operation, management, and planning of the wind-energy system. At the S2S timescales, atmospheric variability is largely related to recurrent and persistent weather patterns, referred to as weather regimes (WRs). In this study, we identify four WRs that influence wind resources over North America using a universal two-stage procedure approach. These WRs are responsible for large-scale wind and power production anomalies over the CONUS at the S2S timescales. The WR-based reconstruction explains up to 40% of the monthly variance of power production over the western United States, and the explanatory power of WRs generally increases with the increase of timescales. The identified relationship between WRs and power production reveals the potential and limitations of the regional WR-based wind resource assessment over different regions of the CONUS across multiple timescales.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Regional Oscillation Source Localization: Implementation in the ESAMS Tool

In recent years, utilities have made great strides in the use of high-speed wide-area measurements collected from within their footprints. However, it is increasingly clear that analyses at wider scales are needed. On January 11, 2019 an oscillation with significant amplitude observable across the Eastern Interconnection persisted for approximately 18 minutes. The generator responsible for the oscillation was only identified after it tripped itself offline. This event, along with several other similar events, demonstrated the need for increased coordination among utilities to effectively mitigate system-wide oscillations and avoid unnecessary or detrimental operator actions. In response to this need, the Eastern Interconnection Situational Awareness Monitoring System (ESAMS) was upgraded to allow the region where an oscillation is originating to be identified. This report documents the algorithms developed for this task and describes how they were integrated into the ESAMS tool. Results from simulation- and measurement-based tests demonstrate the reliability of the approaches.

24 POWER TRANSMISSION AND DISTRIBUTION↗
DOE OSTI2023

More Frequent and Persistent Heatwaves Due To Increased Temperature Skewness Projected by a High‐Resolution Earth System Model

Abstract Heatwaves are strongly associated with temperature distributions, but the mechanisms by which distributions are influenced by climate change remains unclear. Comparing simulations from a high‐spatial resolution Community Earth System Model (CESM‐HR) with those from low‐resolution models, we identify substantial improvements by CESM‐HR in reproducing observed Northern Hemisphere summer temperature skewness, as well as the frequency, intensity, persistence, and total heatwave days. Temperature skewness is strongly linked to land‐atmosphere interactions and atmospheric circulation. Under global warming projections, some regions exhibit enhanced temperature skewness, along with more frequent and persistent heatwaves of greater intensity. We find that in energy‐limited regimes, such as India, negative skewness in latent heat flux facilitates large positive skewness in sensible heat flux, which modulates near‐surface air temperatures. Skewness differences of latent and sensible heat fluxes are amplified under global warming, increasing the temperature skewness. We find that this contrasting flux mechanism is active in several heatwave‐prone regions.

Gao, Yang↗
DOE OSTI2020

Development of Coarse-Grained Models for Poly(4-vinylphenol) and Poly(2-vinylpyridine): Polymer Chemistries with Hydrogen Bonding

In this paper, we identify the modifications needed in a recently developed generic coarse-grained (CG) model that captured directional interactions in polymers to specifically represent two exemplary hydrogen bonding polymer chemistries—poly(4-vinylphenol) and poly(2-vinylpyridine). We use atomistically observed monomer-level structures (e.g., bond, angle and torsion distribution) and chain structures (e.g., end-to-end distance distribution and persistence length) of poly(4-vinylphenol) and poly(2-vinylpyridine) in an explicitly represented good solvent (tetrahydrofuran) to identify the appropriate modifications in the generic CG model in implicit solvent. For both chemistries, the modified CG model is developed based on atomistic simulations of a single 24-mer chain. This modified CG model is then used to simulate longer (36-mer) and shorter (18-mer and 12-mer) chain lengths and compared against the corresponding atomistic simulation results. We find that with one to two simple modifications (e.g., incorporating intra-chain attraction, torsional constraint) to the generic CG model, we are able to reproduce atomistically observed bond, angle and torsion distributions, persistence length, and end-to-end distance distribution for chain lengths ranging from 12 to 36 monomers. We also show that this modified CG model, meant to reproduce atomistic structure, does not reproduce atomistically observed chain relaxation and hydrogen bond dynamics, as expected. Simulations with the modified CG model have significantly faster chain relaxation than atomistic simulations and slower decorrelation of formed hydrogen bonds than in atomistic simulations, with no apparent dependence on chain length.

36 MATERIALS SCIENCE↗
DOE OSTI2015

Aerobic Biotransformation of Fluorotelomer Thioether Amido Sulfonate (Lodyne) in AFFF-Amended Microcosms

The aerobic biotransformation pathways of 4:2, 6:2, and 8:2 fluorotelomer thioether amido sulfonate (FtTAoS) were characterized by determining the fate of the compounds in soil and medium microcosms amended with an aqueous film-forming foam (AFFF) solution. The biotransformation of FtTAoS occurred in live microcosms over approximately 40 days and produced 4:2, 6:2, and 8:2 fluorotelomer sulfonate (FtS), 6:2 fluorotelomer unsaturated carboxylic acid (FtUCA), 5:3 fluorotelomer carboxylic acid (FtCA), and C 4 to C 8 perfluorinated carboxylic acids (PFCAs). Two biotransformation products corresponding to singly and doubly oxygenated forms of 6:2 FtTAoS were also identified through high resolution mass spectrometry (MS) analysis and liquid chromatography tandem-MS. An oxidative assay was used to indirectly quantify the total concentration of polyfluorinated compounds and check the mass balance. The assay produced near complete mass recovery of FtTAoS after biotransformation, with 10% (mol/mol) of the amended FtTAoS accounted for in FtS, FtCA, and PFCA products. The transformation rates of identified products appear to be slow relative to FtTAoS, indicating that some intermediates may persist in the environment. This study confirms some of the sources of FtS and PFCAs in groundwater and soil at AFFF-impacted sites and suggests that fluorinated intermediates that are not routinely measured during the biotransformation of PFASs may accumulate.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2023

Transposon signatures of allopolyploid genome evolution

Hybridization brings together chromosome sets from two or more distinct progenitor species. Genome duplication associated with hybridization, or allopolyploidy, allows these chromosome sets to persist as distinct subgenomes during subsequent meioses. Here, we present a general method for identifying the subgenomes of a polyploid based on shared ancestry as revealed by the genomic distribution of repetitive elements that were active in the progenitors. This subgenome-enriched transposable element signal is intrinsic to the polyploid, allowing broader applicability than other approaches that depend on the availability of sequenced diploid relatives. We develop the statistical basis of the method, demonstrate its applicability in the well-studied cases of tobacco, cotton, and Brassica napus, and apply it to several cases: allotetraploid cyprinids, allohexaploid false flax, and allooctoploid strawberry. These analyses provide insight into the origins of these polyploids, revise the subgenome identities of strawberry, and provide perspective on subgenome dominance in higher polyploids.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2017

Two prospective Li-based half-Heusler alloys for spintronic applications based on structural stability and spin–orbit effect

To search for half-metallic materials for spintronic applications, instead of using an expensive trial-and-error experimental scheme, it is more efficient to use first-principles calculations to design materials first, and then grow them. In particular, using a priori information of the structural stability and the effect of the spin–orbit interaction (SOI) enables experimentalists to focus on favorable properties that make growing half-metals easier. We suggest that using acoustic phonon spectra is the best way to address the stability of promising half-metallic materials. Additionally, by carrying out accurate first-principles calculations, we propose two criteria for neglecting the SOI so the half-metallicity persists. As a result, based on the mechanical stability and the negligible SOI, we identified two half-metals, β-LiCrAs and β-LiMnSi, as promising half-Heusler alloys worth growing.

45 MILITARY TECHNOLOGY, WEAPONRY, AND NATIONAL DEF↗
DOE OSTI2013

IMPLOSION OF CORONAL LOOPS DURING THE IMPULSIVE PHASE OF A SOLAR FLARE

We study the relationship between implosive motions in a solar flare, and the energy redistribution in the form of oscillatory structures and particle acceleration. The flare SOL2012-03-09T03:53 (M6.4) shows clear evidence for an irreversible (stepwise) coronal implosion. Extreme-ultraviolet (EUV) images show at least four groups of coronal loops at different heights overlying the flaring core undergoing fast contraction during the impulsive phase of the flare. These contractions start around a minute after the flare onset, and the rate of contraction is closely associated with the intensity of the hard X-ray and microwave emissions. They also seem to have a close relationship with the dimming associated with the formation of the coronal mass ejection and a global EUV wave. Several studies now have detected contracting motions in the corona during solar flares that can be interpreted as the implosion necessary to release energy. Our results confirm this, and tighten the association with the flare impulsive phase. We add to the phenomenology by noting the presence of oscillatory variations revealed by Geostationary Operational Environmental Satellite soft X-rays (SXR) and spatially integrated EUV emission at 94 and 335 Å. We identify pulsations of ≈60 s in SXR and EUV data, which we interpret as persistent, semi-regular compressions of the flaring core region which modulate the plasma temperature and emission measure. The loop oscillations, observed over a large region, also allow us to provide rough estimates of the energy temporarily stored in the eigenmodes of the active-region structure as it approaches its new equilibrium.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2013

The accretion disk and ionized absorber of the 9.7 hr dipping black hole binary MAXI J1305–704

We report the results from X-ray studies of the newly discovered black hole candidate MAXI J1305–704 based on Suzaku and Swift observations in the low/hard and high/soft states, respectively. The long Suzaku observation shows two types of clear absorption dips, both of which recur on a dip interval of 9.74 ± 0.04 hr, which we identify with the orbital period. There is also partially ionized absorption in the nondip (persistent) emission in both the high/soft state and, very unusually, the low/hard state. However, this absorption (in both states) has substantially lower ionization than that seen in other high inclination systems, where the material forms a homogeneous disk wind. Here instead the absorption is most likely associated with clumpy, compact structures associated with the dipping material, which we see uniquely in this source likely because we view it at a very large inclination angle. A large inclination angle is also favored, together with a low black hole mass, to explain the high disk temperature seen in the fairly low luminosity high/soft state, as Doppler boosting enhances the disk temperature at high inclination. The disk radius inferred from these data is significantly smaller than that of the soft component seen in the low/hard state, supporting models where the disk is truncated at low luminosities. We find, however, that the lack of variability power on timescales of ∼50 s in the Suzaku low/hard state data is difficult to explain, even with a low-mass black hole.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2016

Sodium accumulation at potential-induced degradation shunted areas in polycrystalline silicon modules

Here, we investigated potential-induced degradation (PID) in silicon mini-modules that were subjected to accelerated stressing to induce PID conditions. Shunted areas on the cells were identified with photoluminescence and dark lock-in thermography (DLIT) imaging. The identical shunted areas were then analyzed via time-of-flight secondary-ion mass spectrometry (TOFSIMS) imaging, 3-D tomography, and high-resolution transmission electron microscopy. The TOF-SIMS imaging indicates a high concentration of sodium in the shunted areas, and 3-D tomography reveals that the sodium extends more than 2 um from the surface below shunted regions. Transmission electron microscopy investigation reveals that a stacking fault is present at an area identified as shunted by DLIT imaging. After the removal of surface sodium, tomography reveals persistent sodium present around the junction depth of 300 nm and a drastic difference in sodium content at the junction when comparing shunted and nonshunted regions.

14 SOLAR ENERGY↗
DOE OSTI2019

Crystal Structure of VapBC-1 from Nontypeable Haemophilus influenzae and the Effect of PIN Domain Mutations on Survival during Infection

Toxin-antitoxin (TA) gene pairs have been identified in nearly all bacterial genomes sequenced to date and are thought to facilitate persistence and antibiotic tolerance. TA loci are classified into various types based upon the characteristics of their antitoxins, with those in type II expressing proteic antitoxins. Many toxins from type II modules are ribonucleases that maintain a PilT N-terminal (PIN) domain containing conserved amino acids considered essential for activity. The vapBC ( v irulence- a ssociated p rotein) TA system is the largest subfamily in this class and has been linked to pathogenesis of nontypeable Haemophilus influenzae (NTHi). In this study reported here, the crystal structure of the VapBC-1 complex from NTHi was determined to 2.20 Å resolution. Based on this structure, aspartate-to-asparagine and glutamate-to-glutamine mutations of four conserved residues in the PIN domain of the VapC-1 toxin were constructed and the effects of the mutations on protein-protein interactions, growth of Escherichia coli , and pathogenesis ex vivo were tested. Finally, a novel model system was designed and utilized that consists of an NTHi Δ vapBC-1 strain complemented in cis with the TA module containing a mutated or wild-type toxin at an ectopic site on the chromosome. This enabled the analysis of the effect of PIN domain toxin mutants in tandem with their wild-type antitoxin under the control of the vapBC-1 native promoter and in single copy. This is the first report of a system facilitating the study of TA mutant operons in the background of NTHi during infections of primary human tissues ex vivo .

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

amsession/Kmer-based-Subgenome-Mapping

Hybridization brings together chromosome sets from two or more distinct progenitor species. Genome duplication associated with hybridization, or allopolyploidy, allows these chromosome sets to persist as distinct subgenomes during subsequent meioses. Here, we present a general method for identifying the subgenomes of a polyploid based on shared ancestry as revealed by the genomic distribution of repetitive elements that were active in the progenitors. This subgenome-enriched transposable element signal is intrinsic to the polyploid, allowing broader applicability than other approaches that depend on the availability of sequenced diploid relatives. We develop the statistical basis of the method, demonstrate its applicability in the well-studied cases of tobacco, cotton, and Brassica napus, and apply it to several cases: allotetraploid cyprinids, allohexaploid false flax, and allooctoploid strawberry. These analyses provide insight into the origins of these polyploids, revise the subgenome identities of strawberry, and provide perspective on subgenome dominance in higher polyploids.

Session, Adam↗
DOE OSTI2022

East Asian Rainbands and Associated Circulation over the Tibetan Plateau Region

Abstract Rainbands that migrate northward from spring to summer are persistent features of the East Asian summer monsoon. This study employs a machine learning algorithm to identify individual East Asian rainbands from May to August in the 6-hourly ERA-Interim reanalysis product and captures rainband events during these months for the period 1979–2018. The median duration of rainband events at any location in East Asia is 12 h, and the centroids of these rainbands move northward continuously from approximately 28°N in late May to approximately 33°N in July, instead of making jumps between quasi-stationary periods. Whereas the length and overall area of the rainbands grow monotonically from May to June, the intensity of the rainfall within the rainband dips slightly in early June before it peaks in late June. We find that extratropical northerly winds on all pressure levels over East China are the most important anomalous flow accompanying the rainband events. The anomalous northerlies augment climatological background northerlies in bringing low moist static energy air and thus generate the front associated with the rainband. Persistent lower-tropospheric southerly winds bring in moisture that feeds the rainband and are enhanced a few days prior to rainband events, but they are not directly tied to the actual rainband formation. The background northerlies could originate as part of the Rossby waves resulting from the jet stream interaction with the Tibetan Plateau. The ageostrophic circulation in the jet entrance region peaks in May and weakens in June and July and does not prove to be critical to the formation of the rainbands.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2015

Using regime analysis to identify the contribution of clouds to surface temperature errors in weather and climate models

Many global circulation models (GCMs) exhibit a persistent bias in the 2 m temperature over the midlatitude continents, present in short-range forecasts as well as long-term climate simulations. A number of hypotheses have been proposed, revolving around deficiencies in the soil–vegetation–atmosphere energy exchange, poorly resolved low-level boundary-layer clouds or misrepresentations of deep-convective storms. A common approach to evaluating model biases focuses on the model-mean state. However, this makes difficult an unambiguous interpretation of the origins of a bias, given that biases are the result of the superposition of impacts of clouds and land-surface deficiencies over multiple time steps. This article presents a new methodology to objectively detect the role of clouds in the creation of a surface warm bias. A unique feature of this study is its focus on temperature-error growth at the time-step level. It is shown that compositing the temperature-error growth by the coinciding bias in total downwelling radiation provides unambiguous evidence for the role that clouds play in the creation of the surface warm bias during certain portions of the day. Furthermore, the application of an objective cloud-regime classification allows for the detection of the specific cloud regimes that matter most for the creation of the bias. We applied this method to two state-of-the-art GCMs that exhibit a distinct warm bias over the Southern Great Plains of the USA. Our analysis highlights that, in one GCM, biases in deep-convective and low-level clouds contribute most to the temperature-error growth in the afternoon and evening respectively. In the second GCM, deep clouds persist too long in the evening, leading to a growth of the temperature bias. In conclusion, the reduction of the temperature bias in both models in the morning and the growth of the bias in the second GCM in the afternoon could not be assigned to a cloud issue, but are more likely caused by a land-surface deficiency.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2016

Identifying Urinary and Serum Exosome Biomarkers for Radiation Exposure Using a Data Dependent Acquisition and SWATH-MS Combined Workflow

Purpose: Early and accurate assessment of radiation injury by radiation-responsive biomarkers is critical for triage and early intervention. Biofluids such as urine and serum are convenient for such analysis. Recent research has also suggested that exosomes are a reliable source of biomarkers in disease progression. In the present study, we analyzed total urine proteome and exosomes isolated from urine or serum for potential biomarkers of acute and persistent radiation injury in mice exposed to lethal whole body irradiation (WBI). Methods and Materials: For feasibility studies, the mice were irradiated at 10.4 Gy WBI, and urine and serum samples were collected 24 and 72 hours after irradiation. Exosomes were isolated and analyzed using liquid chromatography mass spectrometry/mass spectrometry-based workflow for radiation exposure signatures. A data dependent acquisition and SWATH-MS combined workflow approach was used to identify significantly exosome biomarkers indicative of acute or persistent radiation-induced responses. For the validation studies, mice were exposed to 3, 6, 8, or 10 Gy WBI, and samples were analyzed for comparison. Results: A comparison between total urine proteomics and urine exosome proteomics demonstrated that exosome proteomic analysis was superior in identifying radiation signatures. Feasibility studies identified 23 biomarkers from urine and 24 biomarkers from serum exosomes after WBI. Urinary exosome signatures identified different physiological parameters than the ones obtained in serum exosomes. Exosome signatures from urine indicated injury to the liver, gastrointestinal, and genitourinary tracts. In contrast, serum showed vascular injuries and acute inflammation in response to radiation. Selected urinary exosomal biomarkers also showed changes at lower radiation doses in validation studies. Conclusions: Exosome proteomics revealed radiation- and time-dependent protein signatures after WBI. A total of 47 differentially secreted proteins were identified in urinary and serum exosomes. Together, these data showed the feasibility of defining biomarkers that could elucidate tissue-associated and systemic response caused by high-dose ionizing radiation. This is the first report using an exosome proteomics approach to identify radiation signatures.

62 RADIOLOGY AND NUCLEAR MEDICINE↗