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At least 163 records · Page 9

From sequence to protein structure and conformational dynamics with artificial intelligence/machine learning

The 2024 Nobel Prize in Chemistry was awarded in part for de novo protein structure prediction using AlphaFold2, an artificial intelligence/machine learning (AI/ML) model trained on vast amounts of sequence and three-dimensional structure data. AlphaFold2 and related models, including RoseTTAFold and ESMFold, employ specialized neural network architectures driven by attention mechanisms to infer relationships between sequence and structure. At a fundamental level, these AI/ML models operate on the long-standing hypothesis that the structure of a protein is determined by its amino acid sequence. More recently, AlphaFold2 has been adapted for the prediction of multiple protein conformations by subsampling multiple sequence alignments. Herein, we provide an overview of the deterministic relationship between sequence and structure, which was hypothesized over half a century ago with profound implications for the biological sciences ever since. We postulate that protein conformational dynamics are also determined, at least in part, by amino acid sequence and that this relationship may be leveraged for construction of AI/ML models dedicated to predicting protein conformational ensembles. Accordingly, we describe a conceptual model architecture, which may be trained on sequence data in combination with conformationally sensitive structural information, coming primarily from nuclear magnetic resonance (NMR) spectroscopy. Notwithstanding certain limitations in this context, NMR offers abundant structural heterogeneity conducive to conformational ensemble prediction. As NMR and other data continue to accumulate, sequence-informed prediction of protein structural dynamics with AI/ML has the potential to emerge as a transformative capability across the biological sciences.

Artificial intelligence↗

Potential Foldamers Based on an ortho- Terphenyl Amino Acid

We describe the synthesis and characterization of a new class of oligomers built from a terphenyl-based amino acid. Here, these oligomeric amides are of interest because the adoption of specific conformations could potentially be driven by the coordinated formation of inter-residue hydrogen bonds and aromatic interactions. Although high-resolution structural data have proven inaccessible, circular dichroism and nuclear magnetic resonance studies suggest that the new oligomers fold concomitantly with discrete self-association in chloroform. Molecular simulations find no sign of folding as a monomer, and in fact suggest that hydrogen bond patterning is anti-cooperative, inhibiting longer helices.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Survey of Modeling and Simulation Techniques for Advanced Manufacturing Technologies Volume II – Predicting Material Performance from Material Microstructure

This report describes the current state of modeling and simulation techniques for predicting the properties of materials fabricated with advanced manufacturing techniques, given the initial microstructure of the material. The report includes a literature survey and a gap analysis outlining and prioritizing key issues in applying these modeling and simulation techniques to nuclear reactor structural materials. The discussion covers both physics-based and data-driven modeling techniques and includes a broad range of manufacturing techniques and materials that may have future nuclear applications. This report is the second in a two-part series, with the first report covering modeling and simulation methods for predicting the initial, as-manufactured structure of advanced manufacturing materials, given a description of the process. Both reports focus on a set of manufacturing technologies likely to be applied to reactor structural components. Taken together, the two reports provide a complete summary of the current state of processing-structure-properties models for advanced manufacturing as well as a survey of applications to reactor structural materials

42 ENGINEERING↗

Examination of nucleon distribution with Bayesian imaging for isobar collisions

Relativistic collision of isobaric systems is found to be valuable in differentiating the nucleon distributions for nuclei with the same mass number. In recent contrast experiment of $^{96}_{44}$Ru + $^{96}_{44}$Ru versus $^{96}_{40}$Zr + $^{96}_{40}$Zr collisions at $\sqrt{s_{NN}}$ = 200 GeV, the ratios of multiplicity distribution, elliptic flow, triangular flow, and radial flow are precisely measured and found to be significantly different from unity, indicating the difference in the shapes of the isobar pair. Here, in this work, we investigate the feasibility of nuclear structure reconstruction from heavy-ion collision observables. We perform Bayesian Inference with employing the Monte-Carlo Glauber model as an estimator of the mapping from nuclear structure to the final state observables and to provide the mock data for reconstruction. By varying combination of observables included in the mock data, we find it plausible to infer Woods–Saxon parameters from the observables. We also observe that single-system multiplicity distribution for the isobar system, rather than their ratio, is crucial to simultaneously determine the nuclear structure for the isobar system.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Measurements at the Facility for Experiments of Nuclear Reactions in Stars (FENRIS) (Final Technical Report)

Nuclear reactions in stars have transformed the universe since the Big Bang, turning hydrogen and helium into all of the elements we see around us today. These reactions fuel a star throughout its lifetime. When the star burns out, its ashes are ejected into space to enrich the next generation of stars so to understand the origin of the elements in the cosmos, we must learn how stars burn their fuel. In this stellar burning, the rates of nuclear reactions are key. The rates can be determined by recreating the reactions in the laboratory, but often they occur too rarely to measure at the low energies characteristic of stellar burning. Novel, indirect measurements must be used. With support from the Department of Energy Office of Science, a research program has been developed to perform such measurements, primarily using the Enge split-pole spectrograph at the Triangle Universities Nuclear Laboratory (TUNL). High-energy nuclear reactions coupled with theoretical models were used to ascertain the rate of the low-energy nuclear reactions occurring in stars. Detailed analysis of the data reveals the structure of nuclei and how they affect stellar burning. In parallel to these experimental efforts, theoretical tools were developed to identify which nuclear reactions are most critical for understanding stars, thus discovering priorities for future measurements. This complementary suite of experiments and theoretical calculations can be used to help answer one of the key questions facing the physics community: How did visible matter come into being and how did it evolve?

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Shell-model calculations for two-neutron transfer near the $N=20$ island of inversion

We describe connections between shell-model calculation results and predictions for two-nucleon transfer reactions. Measurements of the 30 Mg(t,p) 32 Mg reaction were used to identify a low-lying shape-coexisting 0 + state in 32 Mg. Interpretations of those early, limited data were based on simple empirical models. The cross sections for two-nucleon transfer are, however, extremely sensitive to the details of the nuclear-structure. Motivated by the possibility of new high-resolution two-nucleon transfer measurements around the N = 20 Island of Inversion, we have performed shell-model calculations wave functions for states in the nuclei 30,32 Mg using the SDPF-M and SDPF-MU interactions, and from those calculations obtain the two-nucleon transfer amplitudes that we use to predict cross sections for the 28,30 Mg(t,p) 30,32 Mg reactions. The combined results show how the nuclear structure properties influence experimental observables for the (t,p) reaction. We compare our results with the existing data.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Updating Nuclear Energy Cost Estimates for Net Zero World Initiative

Energy modeling of decarbonized scenarios in integrated energy systems requires nuclear energy parameters that are critical for forecasting, modeling and cost structure analysis. Using updated real-world data has always been a challenge to estimate current nuclear reactors costs and deployment scenarios. Given this, an updated set of parameters for overnight capital costs and operation and maintenance costs are estimated for the Net Zero World initiative using recent reports that provided a vast set of open sources data inputs. This paper follows the methodology developed in the Net Zero World report and applies the new ranges estimated in the Gateway for Accelerated Innovation in Nuclear report that address many of the current challenges in obtaining accurate cost data for advanced nuclear concepts. The final goal is to provide new estimates of the overnight capital costs and operational costs for different countries. The present paper improves the earlier capital cost estimations, building on recent literature that aims to obtain accurate data for modeling and simulation to enhance energy system evaluations and support decision-making in areas like de-carbonization and capacity expansion. Finally, the paper compares the new cost estimates with the old cost results.

11 - NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Decay spectroscopy of the blocked fission product 130 $\mathrm{I}$

We report numerous applications rely on the identification and quantification of fission products with the activation technique, where γ-rays emitted in the decay are used to estimate the initial activity of the radionuclide of interest. 130 I is a so-called blocked fission product, which can be produced only directly through fission, a property that makes it particularly attractive for nuclear forensics. A source of 130 I was produced using a (p,n) reaction on enriched 130 Te at the Brookhaven Tandem Van de Graaff and its decay was studied with Gammasphere at Argonne National Laboratory. Two new levels were identified, and over 25 transitions were added, removed or re-placed in the level scheme, with intensity measurements made down to I γ = 0.00066 per 100 decays. The uncertainty on the intensities of the strongest transitions, those that are commonly used to quantify the activity of the radionuclide, was improved by a factor of 2 compared to the previous best assessment and discrepancies in the literature values were resolved. A detailed angular correlation analysis further permitted the determination of a number of spin assignments for excited levels and mixing ratios for γ-ray transitions

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Oak Ridge National Laboratory NCSP Analytical Methods Subtask 3, AMPX Development and Maintenance, and NCSP Nuclear Data Subtask 6, SAMMY Modernization

The modernization of SAMMY continued with consolidation of access to covariance information for adjusted parameters and data in SAMMY. This consolidation allowed for removal of many scratch files. In addition, work was initiated to make the 0K cross section calculation more modular and less dependent on SAMMY global parameters. An initial application programming interface (API) was added to expose cross sections (including resolution broadening) generated by SAMMY to external fitting routines. The processing for thermal moderators in AMPX was updated for selected moderators for which the generated grid was not fine enough. Updated libraries were generated for SCALE. In addition, work continued to fully support new Evaluated Nuclear Data File (ENDF) formats, including the Generalized Nuclear Database Structure (GNDS) in AMPX.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Sensitivity Coefficients Calculated for the Prompt Neutron Decay Constant At or Near Delayed Critical

The derivation of a non-invasive prompt neutron decay constant sensitivity coefficient is provided in this work. The computation of the sensitivity coefficient derived in this work does not require modification of Monte Carlo source code and is based on capabilities available in Monte Carlo N-Particle R© Code Version 6.2. The prompt neutron decay constant sensitivity coefficients are calculated for 44-group and 252-group energy structures for specific nuclide-reaction pairs in the Jezebel benchmark experiment. The nuclide-reaction pairs investigated in this work include Pu- 239(n,f), Pu-240(n,f), and Pu-241(n,f). Physical explanations of the sensitivity profiles exhibited by the 252-group energy structure are investigated for the prompt neutron multiplication factor, mean neutron lifetime, and prompt neutron decay constant. The prompt neutron decay constant sensitivity coefficients calculated for the 44-group and 252-group energy structure of Pu-239(n,f) are compared. Lastly, the 44-group energy structure sensitivity coefficients calculated are used for nuclear-data induced uncertainty quantification of the neutron multiplication factor. This work shows that a reduction in the nuclear data-induced uncertainty of the neutron multiplication factor is possible for all nuclide-reaction pairs investigated when prompt neutron decay constant sensitivity coefficients are utilized. This is important for new critical experiment design optimization studies of measurement configurations. This work provides a basis for more detailed sensitivity analysis and uncertainty quantification of nuclide, reaction, and energy-specific cross section data.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Local structure of Mott insulating iron oxychalcogenides La 2 O 2 Fe 2 OM2(M=S,Se)

Here, we describe the local structural properties of the iron oxychalcogenides, La 2 O 2 Fe 2 OM 2 (M=S,Se), by using pair distribution function analysis applied to total scattering data. Our results from neutron powder diffraction show that M = S and Se possess similar nuclear structures at low and room temperatures. The local crystal structures were studied by investigating deviations in atomic positions and the extent of the formation of orthorhombicity. Analysis of the total scattering data suggests that buckling of the Fe 2 O plane occurs below 100 K. The buckling may occur concomitantly with a change in octahedral height. Furthermore, within a typical range of 1-2 nm, we observed a short-range orthorhombiclike structure suggestive of nematic fluctuations in both of these materials.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Determining the 9 $\mathrm{Be}$($n, γ$) 10 $\mathrm{Be}$ integral cross section at fission neutron energies

The 9 B neutron capture cross section has significant implications for Be materials in the nuclear industry as well as the α process in stellar nucleosynthesis. While the cross section is well constrained at thermal neutron energies, there is a lack of experimental data at higher neutron energies, and the evaluated nuclear data libraries can differ by up to two orders of magnitude. We calculate the 9 Be(n, γ) 10 Be integral cross section at fission neutron energies in an effort to resolve disagreements amongst the nuclear data libraries. Foil irradiation experiments were performed using the Flattop critical assembly at the National Criticality Experiments Research Center with either the highly enriched U or Pu cores, with target foil stacks placed at multiple locations to exploit different neutron energy profiles. Accelerator mass spectrometry was used to measure the 10 Be/ 9 Be ratio in irradiated Be foils, while all other activation products were quantified through gamma spectrometry. The experiments were simulated using the Monte Carlo N-Particle radiation transport code and combined with experimental results to determine the total neutron fluence, while the staysl-pnnl suite and fispact-ii code were used to validate the model and assess the systematic uncertainty. The new 9 Be(n, γ) 10 Be integral cross sections calculated in this work are 26.5 ± 2.2µb at 0.59 ± 0.07 MeV, 24 ± 3 µb at 0.98 ± 0.14 MeV, 21.7 ± 1.3 µb at 1.26 ± 0.11 MeV, 21.8 ± 1.4 µb at 1.32 ± 0.11 MeV, and 18.6 ± 1.1 µb at 1.46 ± 0.13 MeV. These results do not agree with integral cross sections from any of the nuclear data library evaluations. Discrepancies between the new integral cross sections reported here and the nuclear data libraries suggest a more complex cross-section structure in the MeV range which allows for more resonance contributions, and more work is needed to further constrain the evaluated cross sections.

38 RADIATION CHEMISTRY, RADIOCHEMISTRY, AND NUCLEA↗

Examining the EMC effect using the ${F}_{2}^{n}$ neutron structure function

The persistently mysterious deviations from unity of the ratio of nuclear target structure functions to those of deuterium as measured in deep inelastic scattering (often termed the “EMC effect”) have become the canonical observable for studies of nuclear medium modifications to free nucleon structure in the valence regime. The structure function of the free proton is well known from numerous experiments spanning decades. The free neutron structure function, however, has remained difficult to access. Recently it has been extracted in a systematic study of the global data within a parton distribution function extraction framework and is available from the CTEQ–Jefferson Lab (CJ) Collaboration. Here, we leverage the latter to introduce a new method to study the EMC effect in nuclei by reexamining existing data in light of the the magnitude of the medium modifications to the free neutron and proton structure functions independently. From the extraction of the free neutron from world data, it is possible to examine the nuclear effects in deuterium and their contribution to our interpretation of the EMC effect. In this study, we observe that the ratio of the deuteron to the sum of the free neutron and proton structure functions has some x B and Q 2 dependencies that impact the magnitude of the EMC effect as typically observed. Specifically, different EMC slopes are obtained when data from different x B and Q 2 values are utilized. Furthermore, while a linear correlation persists between the EMC and short range correlation effects, the slope is modified when deuteron nuclear effects are removed.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Nuclear Data Sheets for A=246

For this work, available information pertaining to the nuclear structure of ground and excited states for all known nuclei with mass number A = 246 have been compiled and evaluated. The adopted level and decay schemes, as well as the detailed nuclear properties and configuration assignments based on experimental data, are presented for these nuclides. When there are insufficient data, expected values from systematics of nuclear properties and/or theoretical calculations are utilized. Unexpected or discrepant experimental results are also noted. In cases where weighted averaging procedures have been used, the assigned uncertainty in the result is generally not lower than the lowest uncertainty in the data points used in the procedure.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Experimentally Validated Computational Modeling of Creep and Creep-Cracking for Nuclear Concrete Structures

In a Nuclear Power Plant, one of the most important components is the concrete nuclear reactor cavity, which serves both a structural and protective function as the biological radiation shield. Given that creep has been identified as a major knowledge gap in the assessment of nuclear structures (NUREG/CR-7153), this work helps to further the understanding of creep behavior of massive concrete containment structures for decades to enable safe and long-term operation of these facilities. This project has developed a robust, experimentally validated model to predict creep in nuclear concrete structures for up 60 years using short-term creep data thereby enabling a longer service life of critical facilities and early detection of structural failure. The work presented in this report is a pairing of computational and experimental methods. For the first time, the time temperature superposition (TTS) principle was successfully used to generate a uniaxial creep compliance master curve to predict mortar creep response for up to 22,500 days (nearly 60 years) at a reference temperature of 20°C. These data were used as input into finite element analysis (FEA) codes that use highly realistic random, 3D concrete microstructures from reconstructed coarse limestone aggregates. Finite element analysis performed provides the ability to quickly upscale mortar viscoelastic behavior to long-term concrete creep/relaxation data. A master creep compliance curve, constructed from the TTS principle, spanning 27 years, was used to validate two and a half decades of simulated concrete creep. Concurrently, three different simulated wall specimens were designed to mimic the behavior of post-tensioned concrete nuclear containment facility vessel walls over time as a result of concrete creep. The specimens were designed with different thicknesses, transverse and longitudinal reinforcement ratios, and level of post-tensioning stress. Each specimen contained various instrumentation to measure internal concrete temperature, concrete strain, and post-tensioning strain hourly for over 3 years. The concrete creep model developed in this project, based on the FEA concrete simulations, was applied to simulate the structural-scale experiments of prestressed concrete walls conducted in this project using the Grizzly code. These models can represent the effects of reinforcing and prestressing. Although there are some discrepancies with the experimental data, the model can predict the overall trends of the creep response in these experiments. One of these experimental models was also applied to an extended time to demonstrate how the findings from this study can be used to predict the behavior of actual structures of interest that have been in service for extended periods of time.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Connecting Nuclear Structure to Stellar Astrophysics: Neutron Skin in Tin Isotopes

The first observation of a neutron star merger by the LIGO-Virgo collaboration in 2017 highlights the need to improve our fundamental understanding of the equation of state of dense, neutron rich matter. The origin of heavy elements in the r-process and the structure of neutron stars are governed by the properties of neutron rich matter, for which experimental data is limited. Further analysis of this historic event and all future neutron star mergers relies on constraining the nuclear equation of state with experimental observables. We propose a novel method for systematically studying the evolution of the neutron skin in stable tin isotopes, by measuring the low-energy nuclear dipole strength over the broadest possible range of neutron-to-proton ratios in a single element. Nuclear resonance fluorescence with 100% linearly polarized photons from the High Intensity Gamma-ray Source (HIGS) facility was used to selectively measure the E1 photoabsorption strength of 112 Sn and 124 Sn at excitation energies from 3.5 MeV up to neutron separation, where the Pygmy Dipole Resonance dominates. The dipole polarizabilities of 112 Sn and 124 Sn were measured to be 9.03 ± 0.23 fm 3 and 9.11 ± 0.24 fm 3 , respectively. These uniquely systematically consistent measurements provide highly accurate experimental data for improving microscopic nuclear models as well as calculations of astrophysical nucleosynthesis and neutron star structure.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Informing Plant Asset Reliability and Availability Through AI-Driven Analysis of Operator Logs

The availability and reliability of nuclear power plant (NPP) structures, systems, and components (SSCs) are critical parameters for NPP safety. Tracking these parameters is necessary but costly and labor-intensive, requiring the collection and evaluation of SSC event data such as shutdowns, startups, and failures. To show how these events are needed for the parameters an example is given: one measure of reliability is based on the number of equipment failure events and the number of run hours (i.e., the time from a startup event to a shutdown event). Here, this work investigates using artificial intelligence (AI) to mine NPP operator log entry texts for SSC event data. Four AI approaches were explored for identifying these events, including natural language processing (NLP) methods, generative AI, generative AI combined with NLP, and topic modeling. A key challenge addressed with all four approaches is the brevity of operator log entries. Among these four a neural network–based NLP method was shown to be the most promising for this application, achieving F1 scores of 86.0% for shutdowns, 92.2% for startups, and 80.4% for failures on a subject-matter-expert-curated dataset from NPP operator logs, compared to a baseline of 66.6% for a random classifier. This shows that NLP methods can perform better than generative AI. Additionally, the NLP methods combined with generative AI were shown to perform better than generative AI alone. Generative AI was most successful at providing the background information for the NLP methods to use. This work demonstrates the potential to use AI to automate parameter collection from NPP operator log entries and other records.

97 - MATHEMATICS AND COMPUTING↗

C 12 ( n , n 1 ′ γ ) partial γ -ray cross section measured using the GENESIS array

Improved neutron inelastic scattering cross sections have repeatedly been identified as a top priority nuclear data need, important for basic science and a range of applications in nuclear energy, stockpile stewardship, and proliferation detection. For the C 12 ( n , n ′ γ ) reaction in particular, recent measurements have unveiled some structural discrepancies, demonstrating incongruities among themselves and in relation to the ENDF/B-VIII.0 nuclear data evaluation. To help resolve these disagreements, a measurement was performed at the 88-Inch Cyclotron at Lawrence Berkeley National Laboratory using a broad-spectrum neutron beam and a 99.8% pure natural carbon target. The Gamma Energy Neutron Energy Spectrometer for Inelastic Scattering (GENESIS) was employed to measure energy-differential γ -ray emission spectra as a function of incident neutron energy in the energy range of 5.5 to 16.7 MeV. The C 12 partial γ -ray cross sections were extracted at 63 ∘ , 122 . 5 ∘ , and 150 ∘ with respect to the incoming neutron beam and integrated using angular distribution data available in the literature. The data show agreement with a recent literature measurement and evaluation from 11 to 15 MeV, but indicate a larger cross section for incident neutron energies between 5.5 and 8.5 MeV. The measured relative angular distributions are also reported and were found to agree with evaluation. Published by the American Physical Society 2025

Gordon, J. M. (ORCID:0009000789886897)↗