Sacrificial Synthesis of Supported Ru Single Atoms and Clusters on N-doped Carbon Derived from Covalent Triazine Frameworks: A Charge Modulation Approach
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99 GENERAL AND MISCELLANEOUS↗
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A conservative level set method for N-phase flows with a free-energy-based surface tension model
Not Available
Howard, Amanda A. (ORCID:0000000264116198)↗
Comprehensive characterization of N- and O- glycosylation of SARS-CoV-2 human receptor angiotensin converting enzyme 2
The emergence of the coronavirus disease 2019 (COVID-19) pandemic caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has created the need for development of new therapeutic strategies. Understanding the mode of viral attachment, entry and replication has become a key aspect of such interventions. The coronavirus surface features a trimeric spike (S) protein that is essential for viral attachment, entry and membrane fusion. The S protein of SARS-CoV-2 binds to human angiotensin converting enzyme 2 (hACE2) for entry. Herein, we describe glycomic and glycoproteomic analysis of hACE2 expressed in HEK293 cells. We observed high glycan occupancy (73.2 to 100%) at all seven possible N-glycosylation sites and surprisingly detected one novel O-glycosylation site. To deduce the detailed structure of glycan epitopes on hACE2 that may be involved in viral binding, we have characterized the terminal sialic acid linkages, the presence of bisecting GlcNAc and the pattern of N-glycan fucosylation. We have conducted extensive manual interpretation of each glycopeptide and glycan spectrum, in addition to using bioinformatics tools to validate the hACE2 glycosylation. Our elucidation of the site-specific glycosylation and its terminal orientations on the hACE2 receptor, along with the modeling of hACE2 glycosylation sites can aid in understanding the intriguing virus-receptor interactions and assist in the development of novel therapeutics to prevent viral entry. Here, the relevance of studying the role of ACE2 is further increased due to some recent reports about the varying ACE2 dependent complications with regard to age, sex, race and pre-existing conditions of COVID-19 patients.
59 BASIC BIOLOGICAL SCIENCES↗
Event-by-event correlations between Λ ( Λ ¯ ) hyperon global polarization and handedness with charged hadron azimuthal separation in Au + Au collisions at s N N = 27 GeV from STAR
Global polarizations (P) of Λ (Λ¯) hyperons have been observed in non-central heavy-ion collisions. The strong magnetic field primarily created by the spectator protons in such collisions would split the Λ and Λ¯ global polarizations (ΔP=P Λ –P Λ ¯<0). Additionally, quantum chromodynamics (QCD) predicts topological charge fluctuations in vacuum, resulting in a chirality imbalance or parity violation in a local domain. This would give rise to an imbalance (Δn = N L –N R /< N L +N R > ≠0) between left- and right-handed Λ (Λ¯) as well as a charge separation along the magnetic field, referred to as the chiral magnetic effect (CME). This charge separation can be characterized by the parity-even azimuthal correlator (Δγ) and parity-odd azimuthal harmonic observable (Δa 1 ). Measurements of ΔP, Δγ, and Δa 1 have not led to definitive conclusions concerning the CME or the magnetic field, and Δn has not been measured previously. Correlations among these observables may reveal new insights. Furthermore, this paper reports measurements of correlation between Δn and Δa 1 , which is sensitive to chirality fluctuations, and correlation between ΔP and Δγ sensitive to magnetic field in Au+Au collisions at 27 GeV. For both measurements, no correlations have been observed beyond statistical fluctuations.
73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
N-terminal domain swapping: A new paradigm for spermidine/spermine N -acetyltransferase (SSAT) protein structures?
Enterococcus faecalis is a multi-drug-resistant human pathogen that is found in a variety of environments and is challenging to treat. Under stress conditions, some bacteria regulate intracellular polyamine concentrations via polyamine acetyltransferases to reduce their toxicity. The E. faecalis genome encodes two polyamine acetyltransferases: PmvE and BltD. Both of these proteins belong to the Gcn5-related N-acetyltransferase (GNAT) superfamily. It is unclear why there are two enzymes with similar substrate specificities in this organism. To better understand the structure/function relationship of the E. faecalis BltD enzyme, we determined its crystal structure and performed additional assays to explore its oligomeric state and enzymatic activity. The goal was to determine whether there were structural or catalytic differences between this enzyme and other polyamine acetyltransferases that could explain this redundancy and be exploited for future development of targeted inhibitors for this important human pathogen. We found the BltD enzyme was structurally unique due to its N-terminal domain swapped dimer. However, this enzyme adopts a catalytically active monomer rather than dimer in solution. This indicates the crystal structure we obtained may represent a state that forms at high protein and salt concentrations and at low pH used during crystallization. The BltD dimer found in the crystal may represent a unique view of how an inhibitory peptide or molecule could be designed to occupy its active site. Additionally, this structure shows the extensive flexibility of the N-terminal portion of the E. faecalis BltD enzyme.
59 BASIC BIOLOGICAL SCIENCES↗
Molecular Fe-N 4 Moieties Coupled with Atomic Co-N 4 Sites Toward Improved Oxygen Reduction Performance
Research on high-efficiency and cost-efficient catalysts for oxygen reduction reaction (ORR) is still a vital but challenging issue for commercializing metal–air batteries. Herein, a single-molecule/atom hybrid catalyst is developed to boost the ORR, in which iron phthalocyanine molecules containing molecular Fe-N 4 moieties couple with atomic Co-N 4 sites on the surface of polyhedral carbon. Density functional theory calculations reveal that face-to-face laminated construction of Fe-N 4 and Co-N 4 in the hybrid catalyst can effectively modulate the electronic structure of active iron atoms and reduce the energy barrier of the rate-determining step for ORR. As a result, this hybrid catalyst demonstrates excellent ORR performance, featuring a half-wave potential of 0.904 V, a peak power density of 238.3 mW cm -2 for zinc–air battery, and outstanding electrocatalytic stability. Here, this work offers a distinctive and robust molecular/atomic engineering approach to creating efficient electrocatalysts, advancing the fields of metal–air batteries.
36 MATERIALS SCIENCE↗
High‐Performance Low‐Emissivity Paints Enabled by N‐Doped Poly(benzodifurandione) (n‐PBDF) for Energy‐Efficient Buildings
Abstract Low‐emissivity (low‐e) paints reduce radiative heat exchange between buildings and the environment, stabilizing indoor climates and lowering air conditioning demand. However, low‐cost, durable, and colored low‐e paints have yet to be demonstrated. Here, an approach is proposed using n‐doped poly(benzodifurandione) (n‐PBDF), a transparent organic conducting polymer, coated over colored commercial paints. This achieves a low thermal emissivity of 0.19 in the mid‐infrared spectrum, attributed to the efficient charge transport of delocalized π‐electrons in n‐PBDF structure. The reduction in thermal emissivity aids in regulating building temperatures by minimizing heat transfer between buildings and their surroundings across diverse climate zones and seasons. The n‐PBDF coating preserves the underlying paint's color due to its high visible transparency, meeting aesthetic requirements. It also shows strong stability in accelerated indoor weathering tests, ensuring long‐term performance. Simulations estimate annual HVAC energy savings of over 10,800 kWh in San Francisco and 5,500 kWh in Chicago for the typical mid‐rise apartments. The paint's versatility, scalability, and durability make it suitable for buildings, vehicles, and greenhouses, aiding urban heat island mitigation.
Liu, Xiaojie [School of Mechanical Engineering and↗
Solution‐Phase Metathesis of Li 3 N and FeCl 3 to Synthesize Fe 2 N/Fe 3 N Nanoparticles
Soft magnetic materials play key roles in the flow of energy in electrically driven machines and power conversion electronics, and there is a great need for improvements in their magnetic properties to provide the right combination of high saturation magnetization, low coercivity, and high permeability. Most phases of iron nitride (Fe x N) are soft magnetic materials with these characteristics, but they exist as numerous phases which are not all stoichiometric compounds. While the production and magnetic properties of the different phases of bulk iron nitride are well known, accessing phase‐pure nanoscale iron nitride consistently remains a challenge. Most methods for the synthesis of iron nitride nanoparticles require complicated apparatus to achieve high‐temperature nitriding of nanoparticle precursors with gaseous nitrogen sources such as ammonia. The first solution‐phase metathesis reaction between FeCl 3 and Li 3 N in oleylamine is developed to directly synthesize Fe 2 N/Fe 3 N nanoparticles, requiring only a fume hood, glove box, standard chemistry laboratory glassware, and equipment. Finally, the ≈10–15 nm spheres display nearly soft magnetic behavior with a saturation magnetization ≈50–60 A m 2 kg −1 , coercivities between 40–50 kA m −1 , and susceptibility values from 0.0001–0.0006 m 3 kg −1 , well within the ranges reported with other published Fe x N nanoparticle synthesis methods.
iron nitride↗
High-precision Measurement of the 16 O($n, n'γ$) Cross Section using $γ$-ray Detection in Liquid Scintillators with H 2 O and BeO Targets
The 16 O($n, n'γ$) reaction was measured at the Los Alamos Neutron Science Center white neutron source using γ-ray detection in liquid scintillators present in the upper hemisphere of the Correlated Gamma-Neutron Array for sCattering (CoGNAC). Separate measurements of this reaction were performed using H 2 O and BeO targets in successive years. The unique high energies of γ rays emitted from the 16 O($n, n'γ$) reaction facilitated a clean selection of this reaction from threshold to 9.8 MeV incident neutron energy without the need for precise measurements of the γ-ray energy or the scattered neutrons. The precise time resolution of the liquid scintillator detectors was then exploited to obtain high-resolution incident neutron energy measurements, and good agreement was obtained between the H 2 O and BeO results reported here. The dominant literature data sets for this reaction have systematic differences between them, but the present results improve upon the neutron energy resolution of earlier measurements and show important discrepancies in recent data. Finally, tentative data are also shown up to 20 MeV incident neutron energy but are potentially subject to improved understanding of the relative γ-ray and α decay branches from 16 O excited states.
73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
Crystal structure of nicarbazin, (C 13 H 10 N 4 O 5 )(C 6 H 8 N 2 O)
The crystal structure of nicarbazin has been solved and refined using synchrotron X-ray powder diffraction data and optimized using density functional theory techniques. Nicarbazin is a co-crystal of 4,4′-dinitrocarbanilide (DNC) and 2-hydroxy-4,6-dimethylpyrimidine (HDP) molecules. Nicarbazin crystallizes in space groupP-1(#2) witha= 6.90659(8),b= 12.0794(4),c= 13.5040(7) Å,α= 115.5709(11),β= 102.3658(6),γ= 91.9270(4)°,V= 982.466(5) Å 3 , andZ= 2. The DNC and HDP molecules are linked by two strong N–H⋯O and N–H⋯N hydrogen bonds, and the HDP molecules are linked into centrosymmetric dimers by another N–H⋯O hydrogen bond. These strong hydrogen bonds link the molecules into layers parallel to theab-plane and parallel stacking of both DNC and HDP molecules is prominent in the structure. The powder pattern has been submitted to ICDD for inclusion in the Powder Diffraction File™ (PDF®).
Materials Science↗
Creating Functional Oxynitride–Silicon Interfaces and SrNbO 2 N Thin Films for Photoelectrochemical Applications
Photoelectrochemical performance dependence upon absorption length, carrier diffusion length, and surface area of an oxynitride photoabsorber is investigated. How best to fabricate optical-quality thin films of bandgap-tunable oxynitrides is also discussed. We targeted the stoichiometric compound SrNbO 2 N as an optimal wide-bandgap photoabsorber (1.9 eV) for use with silicon (1.1 eV) in a tandem structure photoelectrochemical cell. Preparation of perovskite oxynitrides at high-temperature as isolated powders is often straightforward, but it is difficult to integrate them as thin films in tandem junction devices with low-temperature materials. Here we develop the first method to prepare optical-quality SrNbO 2 N thin-films of tunable thickness and roughness on single-crystal silicon substrate. This achievement required an interfacial layer of ultra-thin TaN to be used as a barrier to reduce the inter-diffusion of silicon and oxygen during oxynitride syn-thesis. We produced a variety of SrNbO 2 N film thicknesses (20-440 nm) on n + -Si(100) surfaces. Roughness factor (0.14-21) scaled with thickness. The intrinsic photoelectrochemical activity of these devices was evaluated using a low-barrier sacrificial electron donor. Photocurrent density and photovoltage revealed a significant (and non-linear) dependence on film thickness and roughness. Furthermore, absorption length, carrier diffusion length, and surface area were each found to play key roles. Balancing these is required for optimally performing devices.
08 HYDROGEN↗
Accessing Organonitrogen Compounds via C–N Coupling in Electrocatalytic CO 2 Reduction
Given the limited product variety of electrocatalytic CO 2 reduction reactions solely from CO 2 and H 2 O as the reactants, it is desirable to expand the product scope by introducing additional reactants that provide elemental diversity. The integration of inorganic heteroatom-containing reactants into electrocatalytic CO 2 reduction could in principle enable the sustainable synthesis of valuable products, such as organonitrogen compounds, which have widespread applications but typically rely on NH 3 derived from the energy-intensive and fossil-fuel-dependent Haber-Bosch process for their industrial scale production. Here, in this Perspective, research progress towards building C-N bonds in N-integrated electrocatalytic CO 2 reduction is highlighted, and the electrosyntheses of urea, acetamides, and amines are examined from the standpoint of reactivity, catalyst structure, and most fundamentally, mechanism. Mechanistic discussions of C-N coupling in these advances are emphasized and critically evaluated, with the aim of directing future investigations on improving the product yield and broadening the product scope of N-integrated electrocatalytic CO 2 reduction.
electrochemical reduction↗
Electrochemical Reductive N-Methylation with CO 2 Enabled by a Molecular Catalyst
The development of benign methylation reactions utilizing CO 2 as a one-carbon building block would enable a more sustainable chemical industry. Electrochemical CO 2 reduction has been extensively studied, but its application for reductive methylation reactions remains out of the scope of current electrocatalysis. Here, in this work, we report the first electrochemical reductive N-methylation reaction with CO 2 and demonstrate its compatibility with amines, hydroxylamines, and hydrazine. Catalyzed by cobalt phthalocyanine molecules supported on carbon nanotubes, the N-methylation reaction proceeds in aqueous media via the chemical condensation of an electrophilic carbon intermediate, proposed to be adsorbed or near-electrode formaldehyde formed from the four-electron reduction of CO 2 , with nucleophilic nitrogenous reactants and subsequent reduction. By comparing various amines, we discover that the nucleophilicity of the amine reactant is a descriptor for the C-N coupling efficacy. We extend the scope of the reaction to be compatible with cheap and abundant nitro-compounds by developing a cascade reduction process in which CO 2 and nitro-compounds are reduced concurrently to yield N-methyl amines with high mono-methylation selectivity via the overall transfer of 12 electrons and 12 protons.
amines↗
The Modeled Seasonal Cycles of Surface N 2 O Fluxes and Atmospheric N 2 O
Nitrous oxide (N 2 O) is a greenhouse gas and stratospheric ozone-depleting substance with large and growing anthropogenic emissions. Previous studies identified the influx of N 2 O-depleted air from the stratosphere to partly cause the seasonality in tropospheric N 2 O (aN 2 O), but other contributions remain unclear. Here, we combine surface fluxes from eight land and four ocean models from phase 2 of the Nitrogen/N 2 O Model Intercomparison Project with tropospheric transport modeling to simulate aN 2 O at eight remote air sampling sites for modern and pre-industrial periods. Models show general agreement on the seasonal phasing of zonal-average N 2 O fluxes for most sites, but seasonal peak-to-peak amplitudes differ several-fold across models. The modeled seasonal amplitude of surface aN 2 O ranges from 0.25 to 0.80 ppb (interquartile ranges 21%–52% of median) for land, 0.14–0.25 ppb (17%–68%) for ocean, and 0.28–0.77 ppb (23%–52%) for combined flux contributions. The observed seasonal amplitude ranges from 0.34 to 1.08 ppb for these sites. The stratospheric contributions to aN 2 O, inferred by the difference between the surface-troposphere model and observations, show 16%–126% larger amplitudes and minima delayed by ~1 month compared to Northern Hemisphere site observations. Land fluxes and their seasonal amplitude have increased since the pre-industrial era and are projected to grow further under anthropogenic activities. Our results demonstrate the increasing importance of land fluxes for aN 2 O seasonality. Considering the large model spread, in situ aN 2 O observations and atmospheric transport-chemistry models will provide opportunities for constraining terrestrial and oceanic biosphere models, critical for projecting carbon-nitrogen cycles under ongoing global warming.
54 ENVIRONMENTAL SCIENCES↗
The effect of low temperature on poly(3-methyl- N -vinylcaprolactam)- b -poly( N -vinylpyrrolidone) diblock copolymer nanovesicles assembled from all-aqueous media
Nanosized polymeric vesicles (polymersomes) self-assembled from double hydrophilic copolymers of poly(3-methyl-N-vinylcaprolactam) n -b-poly(N-vinylpyrrolidone) m (PMVC n -b-PVPON m ) using all aqueous media are a promising platform for biomedical applications, because of their superior stability over liposomes in vivo and high loading capacity. Herein, we explored the temperature-sensitive behavior of PMVC 58 -b-PVPON 65 vesicles using transmission electron microscopy (TEM), dynamic light scattering (DLS), atomic force microscopy (AFM), and small-angle neutron scattering (SANS) in response to lowering the solution temperature from 37 to 25, 20, 14 and 4 °C. The copolymer vesicles with an average size of 350 nm at 37 °C were assembled from the diblock copolymer dissolved in aqueous solution at 4 °C. We show that while the polymersome's size gradually decreases upon the temperature decrease from 37 to 4 °C, the average shell thickness increases from 17 nm to 25 nm, respectively. SANS study revealed that the PMVC 58 -b-PVPON 65 vesicle undergoes a gradual structure evolution from a dense-shell vesicle at 37–25 °C to a highly-hydrated shell vesicle at 20–14 °C to molecular chain aggregates at 4 °C. From SANS contrast matching study, this vesicle behavior is found to be driven by the gradual rehydration of PMVC block at 37–14 °C. The shell hydration at 20–14 °C also correlated with the 4.4-fold decrease in the relative fluorescence intensity from vesicle-encapsulated fluorescent dye, indicating ~80% of the dye release within 12 hours after the vesicle exposure to 14 °C. No significant (<5%) dye release was observed for the vesicle solutions at 37–20 °C, indicating excellent cargo retention inside the vesicles. Our study provides new fundamental insights on temperature-sensitive polymer vesicles and demonstrates that the copolymer assembly into polymersomes can be achieved by decreasing a copolymer aqueous solution temperature below 14 °C followed by solution exposure to ≥20 °C. This type of all-aqueous assembly, instead of nanoprecipitation from organic solvents or solvent exchange, can be highly desirable for encapsulating a wide range of biological molecules, including proteins, peptides, and nucleic acids, into stable polymer vesicles without a need for organic solvents for dissolution of the copolymers that are amphiphilic at physiologically relevant temperatures of 20–37 °C.
36 MATERIALS SCIENCE↗
Breaking covalent bonds in the context of the many-body expansion (MBE). I. The purported “first row anomaly” in XH n (X = C, Si, Ge, Sn; n = 1–4)
We present a new, novel implementation of the Many-Body Expansion (MBE) to account for the breaking of covalent bonds, thus extending the range of applications from its previous popular usage in the breaking of hydrogen bonds in clusters to molecules. A central concept of the new implementation is the in situ atomic electronic state of an atom in a molecule that casts the one-body term as the energy required to promote it to that state from its ground state. The rest of the terms correspond to the individual diatomic, triatomic, etc., fragments. Its application to the atomization energies of the XH n series, X = C, Si, Ge, Sn and n = 1–4, suggests that the (negative, stabilizing) 2-B is by far the largest term in the MBE with the higher order terms oscillating between positive and negative values and decreasing dramatically in size with increasing rank of the expansion. The analysis offers an alternative explanation for the purported “first row anomaly” in the incremental H n–1 X–H bond energies seen when these energies are evaluated with respect to the lowest energy among the states of the XH n molecules. Due to the “flipping” of the ground/first excited state between CH 2 ( 3 B 1 ground state, 1 A 1 first excited state) and XH 2 , X = Si, Ge, Sn ( 1 A 1 ground state, 3 B 1 first excited state), the overall picture does not exhibit a “first row anomaly” when the incremental bond energies are evaluated with respect to the molecular states having the same in situ atomic states.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Impact of β n and spectrum of n = 1 applied fields on fast ion losses in DIII-D
Abstract The effect of n = 1 magnetic perturbations (MPs) on prompt fast ion losses in DIII-D has been investigated using the light ion beam probe technique. The effect of normalized beta, β n , and the plasma response to the MPs is studied for several MP spectra. Magnetics data show a strong dependence of plasma response to β n that depends on the phase difference in perturbation coils, Δ ϕ U L . For most phases, the response increases with β n , however, the response is suppressed for phases between 180 ∘ and 240 ∘ . Experimental data from scintillator based fast ion loss detectors shows that relative fluctuation of lost ions (20%–30% of the steady signal) does not diminish across the L- to H-mode transition for Δ ϕ U L = 240 ∘ , despite the 34% decrease in radial response field and 50% decrease in poloidal response field. Simulations of the DIII-D discharges using M3D-C1 and ASCOT5 find that prompt losses from neutral beam injection in each investigated case hit the first wall at several concentrated locations: the vessel floor, midplane diagnostic ports, vessel ceiling, and inner wall. Simulated losses from co-injection neutral beams are born outside the last closed flux surface, corresponding to radial orbit displacements of 3–6 cm due to the MPs.
70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
Low-energy cross-section measurement of the B 10 ( α , n ) N 13 reaction and its impact on neutron production in first-generation stars
Nucleosynthesis in the first generation of massive stars offers a unique setting to explore the creation of the first heavier nuclei in an environment free of impurities from earlier stellar generations. In later generations of massive stars, hydrogen burning occurs predominantly through the CNO cycles, but without the carbon, nitrogen, and oxygen to catalyze the reaction sequence, first stars would have to rely on the inefficient pp chains for their energy production. Observations of second and third generation stars show pronounced abundances of carbon and oxygen isotopes, which suggests a rapid conversion of the primordial abundances to heavier elements. While the triple-alpha-process primarily facilitates this conversion, there are alternative reaction sequences, such as 2 H(α,γ) 6 Li(α,γ) 10 B(α,n) 13 N, that may play a significant role. To study such alternate reaction pathways for production of carbon and heavier nuclei, a number of new measurements are needed. In this work, new measurements are reported for the 10 B(α,n) 13 N reaction, extending the cross section down to 575 keV incident α-particle energy. The measurements were made using a state-of-the-art deuterated liquid scintillator and a spectrum unfolding technique. An R-matrix analysis was performed in order to facilitate a comparison of the underlying nuclear structure with the reaction measurements. An unexpected upturn is observed in the low-energy S factor that indicates the presence of a new low-energy resonance. Finally, a revised reaction rate is determined that takes into account the present data as well as other previous measurements from the literature that were previously neglected.
73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗