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At least 163 records · Page 9

Accessing Data Stored in Amazon S3 Using the Hyrax OPeNDAP Server

For three years we have been investigating data storage and retrieval in the Amazon Cloud, striving to optimize both storage structures and (cache-enhanced retrieval processes. These optimizations are hidden from data users, who simply employ the Data Access Protocol (DAP), a popular, Web-based Application Programmer Interface (API) developed by OPeNDAP. We present our collected findings and their realization in the Hyrax data server. Specific techniques include caching data on spinning disk; accessing sharded data in place; optimizing the organizational structures for data within the flat key-value space of Simple Storage Service (S3); and employing an API extension that permits simultaneous operations on many datasets in a single request.

Data access↗

Long-Term Impacts of Selective Logging on Amazon Forest Dynamics from Multi-Temporal Airborne LiDAR

Forest degradation is common in tropical landscapes, but estimates of the extent and duration of degradation impacts are highly uncertain. In particular, selective logging is a form of forest degradation that alters canopy structure and function, with persistent ecological impacts following forest harvest. In this study, we employed airborne laser scanning in 2012 and 2014 to estimate three-dimensional changes in the forest canopy and understory structure and aboveground biomass following reduced-impact selective logging in a site in Eastern Amazon. Also, we developed a binary classification model to distinguish intact versus logged forests. We found that canopy gap frequency was significantly higher in logged versus intact forests even after 8 years (the time span of our study). In contrast, the understory of logged areas could not be distinguished from the understory of intact forests after 6–7 years of logging activities. Measuring new gap formation between LiDAR acquisitions in 2012 and 2014, we showed rates 2 to 7 times higher in logged areas compared to intact forests. New gaps were spatially clumped with 76 to 89% of new gaps within 5 m of prior logging damage. The biomass dynamics in areas logged between the two LiDAR acquisitions was clearly detected with an average estimated loss of -4.14 +/- 0.76 MgC/hay. In areas recovering from logging prior to the first acquisition, we estimated biomass gains close to zero. Together, our findings unravel the magnitude and duration of delayed impacts of selective logging in forest structural attributes, confirm the high potential of airborne LiDAR multitemporal data to characterize forest degradation in the tropics, and present a novel approach to forest classification using LiDAR data.

Pinage, Ekena Rangel↗

Lessons Learned and Cost Analysis of Hosting a Full Stack Open Data Cube (ODC) Application on the Amazon Web Services (AWS)

The Open Data Cube (ODC) initiative, with support from the Committee on Earth Observation Satellites (CEOS) System Engineering Office (SEO) has developed a state-of-the-art suite of software tools and products to facilitate the analysis of Earth Observation data. This paper presents a short summary and cost analysis of our experience using Amazon Web Services (AWS) to host one such software product, the CEOS Data Cube (CDC) web-based User Interface (UI). In order to provide adaptability, flexibility, scalability, and robustness, we leverage widely-adopted and well-supported technologies such as the Django web framework and the AWS Cloud platform. The UI has empowered users by providing features that assist with streamlining data preparation, data processing, data visualization, and the sub-setting of Analysis Ready Data (ARD) products in order to achieve a wide variety of Earth imaging objectives.

Rizvi, Syed R.↗

The Ability of GeoCarb to Constrain the Interannual Variability of Carbon Gases over the Amazon

We perform a number of idealized assimilation experiments with the GEOS constituent data assimilation system to test the ability of GeoCarb retrievals of CO, CO2, and CH4 to constrain the interannual variability of these gases over the Amazon. Retrievals for instruments on other satellites which observe in similar channels (e.g. MOPITT, GOSAT, and OCO-2) are limited due to persistent cloud coverage. Given its ability to sample the same location multiple times in one day, the expectation is that GeoCarb retrievals will return more soundings than those from previous missions. The goal of the assimilation experiments is to understand which scanning strategies lead to the best sounding densities and thus have the best chance of constraining interannual variability in the carbon species. The experiments each begin by picking a given year at random from a nature run (i.e., a model simulation meant to represent the truth). The model fields are sampled according to a given strategy and then screened to account for cloud coverage. Next, we pick another year at random and assimilate the synthetic GeoCarb samples into the GEOS model for that year. The output of the assimilation, 6-hourly, 3D fields of each constituent, is then directly comparable to the nature run. This comparison allows us to evaluate the ability of GeoCarb measurements to constrain the interannual variability of each gas.

Weir, B.↗

Nutrient Addition Effects on Phytoplankton Communities in the Amazon River Plume

The types and abundance of phytoplankton is largely controlled by availability of sunlight and bioavailable nutrients. Phytoplankton require essential nutrients including nitrate, phosphate, and silicate to grow, so understanding the role of these macronutrients in limiting the growth phytoplankton communities—and the way this may differ depending on community composition—is key to understanding the controls on phytoplankton biomass and community structure. We aimed to explore how the availability of these nutrients affects the health and composition of phytoplankton communities by conducting a series of nutrient amendment experiments (NAEs) with samples from the Western Tropical North Atlantic, which is heavily influenced by the nutrient-rich, low salinity waters of the Amazon River Plume. These experiments, conducted at five locations in and around the plume, provide greater resolution and further our understanding about the ways nutrients affect communities in dynamic coastal regions.

Klotz, Vivian↗

A Brief Assessment of the Impact of Nearly 40 Years of Assimilated Observations Over the Amazon Basin

Adding a Forecast Sensitivity-based Observation Impact component to Version 2 of the Modern Era Retrospective-analysis for Research and Applications, the present study provides an assessment of the impact of nearly 40 years of observations on short-range (24-hr) forecasts over the Amazon basin. Under self-verification, forecast errors are found to slightly increase from the early data-sparse days to the more recent years, when data dramatically increase. Throughout the reanalysis, satellite radiances dominate in volume, but only before 1999 they dominate the impacts. Beyond 1999, over 50% of forecast error reduction is associated with conventional observations (radiosondes). Atmospheric Motion Vectors are also found to be large contributors to error reduction, but their contribution reduces in dry periods. In opposition to Atmospheric Motion Vectors, satellite radiances tend to contribute more in the dry season. Results provide motivation for additional conventional observations and the use of all-sky treatment of radiances.

F. L. R. Diniz↗

Peru Health & Air Quality: Land Use Change in the Rapidly Developing Peruvian Amazon and Implications on Zoonotic Disease Incidence

In the Madre de Dios region of the Peruvian Amazon, forests are being cleared for mining, timber harvesting, road construction, and hydroelectric dam development. These rapid land use changes are increasing human presence in previously sparsely populated areas, disrupting ecosystems and increasing the proximity of human settlement to zoonotic disease vectors. Dengue fever and leishmaniasis are two neglected tropical diseases which are prevalent in Madre de Dios and have been associated with urbanization and road construction. In partnership with the Peruvian Ministries of Health (MINSA) and the Environment (MINAM) and other in-country collaborators, our team examined Land Use Land Cover (LULC) correlations with reported dengue and leishmaniasis incidence in the Madre de Dios region to help partners understand the spatial relationship between land use change and zoonotic disease incidence. We created a LULC classification script using Google Earth Engine with Landsat 5 Thematic Mapper and Landsat 8 Operational Land Imager imagery to classify land cover in 2010, 2015, and 2020 and evaluate changes over this time period. We then used the quantified results of the LULC assessment in conjunction with reported disease cases to evaluate correlations between disease incidence and key land cover changes across Madre de Dios’s 11 districts. In the second term, the team will use these products to develop more detailed disease incidence risk maps and models. High risk areas will then be classified, using PeruSat-1 that allow for even higher resolution mapping at less than 3 meters. These products will allow the partners to understand hotspots of land cover change in Peru and the relationship with outbreaks to inform public health decision making and environmental policy.

Elizabeth Stapleton↗