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All sources NASA NTRS DOE OSTI

DOE OSTI2026

Aggregation Methods for Quantifying PTM and Structural Changes in Bottom-Up Proteomics

Bottom-up proteomic workflows rely on sequential preprocessing steps, commonly including peptide-to-protein aggregation (“roll-up”), to enhance data reliability and interpretability. While roll-up is effective for protein-centered analyses, it may be suboptimal for applications focused on post-translational modifications (PTMs) or protein structural changes, such as limited proteolysis–mass spectrometry (LiP-MS). Here, we investigate how different roll-up strategies influence site-level quantification in PTM differential analysis. Moreover, we introduce a novel site-centric roll-up approach tailored for LiP-MS, which quantifies proteolytic fragments rather than solely tryptic peptides. We benchmark these methods through simulation studies, comparing their sensitivity and specificity in detecting structural and PTM-driven changes. We found that the median and mean roll-up methods outperform the sum method in both PTM and LiP proteomics, and site-level quantification in LiP outperforms peptide-level quantification. Our findings offer the first systematic, data-driven guidance for selecting roll-up techniques in site-level proteomic analyses, with implications for both PTM-focused and structural proteomics studies.

aggregation↗

DOE OSTI2026

Effects of Recovery Conditions and Aggregation Mechanisms on the Chemical and Physical Properties of Hybrid Poplar and Corn Stover Lignins

Heterogeneity in the physical properties and processing behavior of lignins recovered from biorefining process streams can hinder their effective utilization and industrial valorization. This work investigates lignin recovery by acidification from alkaline pretreatment liquors of varying sources (corn stover and hybrid poplar), compositions, solid contents, and incubation temperatures prior to filtration. Recovered lignins were characterized for filtration performance, mass yield, chemical composition, particle size and morphology, and color. A transition temperature was identified corresponding to marked shifts in lignin physical properties and was a function of the solid content and liquor source. Filtration below this temperature yielded slow-filtering, dark, brittle lignins with smoother particle surfaces, whereas precipitation above this threshold yielded fast-filtering, lighter, powdery lignins with rougher particle surfaces. The impact of temperature and concentration on universal cluster aggregation mechanisms was proposed to explain the differences between lignin particle properties and filtration behavior.

Aggregation↗

DOE OSTI2025

Upstreamness and downstreamness in input–output analysis from local and aggregate information

Abstract Ranking sectors and countries within global value chains is of paramount importance to estimate risks and forecast growth in large economies. However, this task is often non-trivial due to the lack of complete and accurate information on the flows of money and goods between sectors and countries, which are encoded in input–output (I–O) tables. In this work, we show that an accurate estimation of the role played by sectors and countries in supply chain networks can be achieved without full knowledge of the I–O tables, but only relying on local and aggregate information, e.g., the total intermediate demand per sector. Our method, based on a rank-1 approximation to the I–O table, shows consistently good performance in reconstructing rankings (i.e., upstreamness and downstreamness measures for countries and sectors) when tested on empirical data from the world input–output database. Moreover, we connect the accuracy of our approximate framework with the spectral properties of the I–O tables, which ordinarily exhibit relatively large spectral gaps. Our approach provides a fast and analytically tractable framework to rank constituents of a complex economy without the need of matrix inversions and the knowledge of finer intersectorial details.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2024

Multi-Factor-Coupled, Ahead-of-Time Aggregation of Power Flexibility Under Forecast Uncertainty

The increasing penetration of distributed energy resources (DERs) is significantly reshaping the role of distribution systems under active energy management. To aggregate the active-reactive power flexibility of DERs dispersed at the feeder and provide capacity support to the transmission system, it is essential to efficiently identify feasible substation power injection trajectories. This paper introduces a novel ahead-of-time flexibility characterization method to address it. First, a polyhedral non-feeder-level power flexibility region (PFR) is constructed, accounting for various time-dependent, power-coupled, and forecast error uncertainties. Then, a polyhedral feeder-level PFR is analytically derived through a coordinate transformation, which can reveal the uncertainty propagation path, i.e., how uncertainty applies to the feeder-level PFR. To facilitate the high-level application, a tractable chance-constrained Chebyshev centering optimization model is further developed to find a ball-shaped inner approximation of the feeder-level PFR. Finally, the proposed method is validated on a modified IEEE 123-bus test system. Here, both theoretical and experimental results show that, with appropriate robustness parameter settings, the proposed method can make the approximated PFR less conservative with abundant robustness against forecast error uncertainty.

24 POWER TRANSMISSION AND DISTRIBUTION↗

NASA NTRS2016

Advancing the Power and Utility of Server-Side Aggregation

During the upcoming Summer 2016 meeting of the ESIP Federation (July 19-22), OpenDAP will hold a Developers and Users Workshop. While a broad set of topics will be covered, a key focus is capitalizing on recent EOSDIS-sponsored advances in Hyrax, OPeNDAPs own software for server-side realization of the DAP2 and DAP4 protocols. These Hyrax advances are as important to data users as to data providers, and the workshop will include hands-on experiences of value to both. Specifically, a balanced set of presentations and hands-on tutorials will address advances in1.server installation,2.server configuration,3.Hyrax aggregation capabilities,4.support for data-access from clients that are HTTP-based, JSON-based or OGC-compliant (especially WCS and WMS),5.support for DAP4,6.use and extension of server-side computational capabilities, and7.several performance-affecting matters.Topics 2 through 7 will be relevant to data consumers, data providers andnotably, due to the open-source nature of all OPeNDAP softwareto developers wishing to extend Hyrax, to build compatible clients and servers, andor to employ Hyrax as middleware that enables interoperability across a variety of end-user and source-data contexts. A session for contributed talks will elaborate the topics listed above and embrace additional ones.

aggregation↗

NASA NTRS2019

OPeNDAP Clients, Aggregation and S3

In this talk, we will discuss our work for testing OPeNDAP client access of data stored in the Amazon S3 cloud storage using a set of common analysis tools including Panoply, Jupyter Notebooks with Python xarray, NCO command line tool package, ArcGIS, and GDAL. We will also discuss our ongoing work on improving performance in Hyrax aggregation functionality.

Amazon S3↗

NASA NTRSDate not supplied

Statistical Descriptors of Composite Fiber Aggregation

This study introduces a method of characterizing fiber aggregation and resin rich regions in composite microstructures. Microscale models of representative elements (RVE) need to be indicative of the extend of clustering (i.e. close fiber-to-fiber interaction) and resin rich “pools” which may impact the overall strength and performance of a composite structure. This algorithm was used to evaluate different unidirectional 2-D microstructure scans, which will be compared to their manufacturing method or any special treatment processes. These cluster and pool scan statistics can be used as criteria to judge statistical equivalency of artificially constructed microstructures.

Statistics↗

NASA NTRS2022

A Record of Low-Temperature Asteroidal Processes of Amoeboid Olivine Aggregates from the Kainsaz Co3.2 Chondrite

Amoeboid olivine aggregates (AOAs) from the Kainsaz CO3.2 chondrite were analyzed using transmission electron microscopy in order to gain a more complete understanding of thermal metamorphism on the parent body and the role of fluids during metamorphic heating. The Kainsaz AOAs are dominated by strongly zoned, fine-grained, olivine grains (Fa2-31) with heterogeneous Fe enrichments along the grain boundaries, which are interpreted as the result of 26Fe2+-Mg2+ interdiffusion with the matrix during thermal metamorphism. However, our diffusion calculations show that such AOA olivine zoning and compositions cannot be produced by a simple diffusional exchange during metamorphic heating, unlike chondrule olivine zoning and compositions. In addition, fine-grained ferroan olivine overgrowths occur heterogeneously in crystallographic continuity with olivines on the AOA exteriors. The overgrowths (Fa33-36) are compositionally distinct from the underlying AOA olivines and are not fully equilibrated with the matrix olivines (Fa~20-55).The ferroan olivine overgrowths likely formed by precipitation from fluids in an epitaxial relationship with forsteritic olivine on the edges of AOAs. Texturally and compositionally diverse chromite grains are also observed along olivine grain boundaries, in olivine grains, and in pore spaces between olivine grains. They share a similar crystallographic orientation relationships with adjacent olivine, suggestive of their formation by exsolution and/or epitaxial growth. Collectively, these observations provide evidence for the mobilization of Fe, Mg, Si, Cr, and Al in the presence of fluids along olivine grain boundaries and into olivine grains during thermal metamorphism. We conclude that in Kainsaz AOAs, the strong zonation development in individual olivine grains and the formation of ferroan olivine overgrowths and chromite grains were a fluid-driven process that occurred at relatively low temperatures (<500°C), during the cooling history of the CO3 chondrite parent body, following the peak of thermal metamorphism.

Amoeboid olivine aggregates↗

NASA NTRS2022

Assessment of Aggregate Risk for JWST

This presentation communicates the aggregate assessment of risk performed for the James Webb Space Telescope prior to shipping the observatory to the launch site.

JWST↗

NASA NTRSDate not supplied

Characteristics of Extreme Precipitation Events (EPE) in the Tropics and Association with Convective Aggregation

Extreme precipitation (EP) has become increasingly frequent and is causing more devastating impacts on society in recent years. EP is traditionally measured by the maximum or threshold-exceeding gridded precipitation of a given duration. We have developed an extreme precipitation event (EPE) algorithm that tracks entire precipitation life cycle across space and time, which enables us to characterize properties of the entire EPE, such as duration (from sub-daily to multi-day), areal coverage, and total rain volume of the event. These EPE characteristics are critical in understanding precipitation development and their interaction with large-scale meteorology, in addition, providing more comprehensive matrix for disaster management. This study examines the EPE characteristics from the tropics derived from high-resolution Integrated Multi-satellitE Retrievals fro GPM (IMERG) product. The difference between EPE characteristics between tropical land and ocean will be discussed. Large-scale meteorological control as well as convective aggregation will be studied on the impact of EPE characteristics in tropics.

Convective aggregation↗

DOE OSTI2024

Efficacy of underground aggregate infiltration beds under a permeable pavement system

Urban areas often face significant flooding challenges due to impermeable surfaces that exacerbate stormwater runoff, making effective stormwater management essential. This study demonstrated that combining pervious concrete pavement systems with underground aggregate storage beds and rain gardens can significantly enhance water infiltration and drainage efficiency, providing valuable insights for designing low-impact development strategies in flood-prone regions.

Haselbach, Liv [Lamar Univ., Beaumont, TX (United ↗

DOE OSTI2025

Are better combinations of DERs more profitable?: Combinatorial optimization for aggregation of DERs in wholesale electricity markets

Recently, regulatory changes in various countries have enabled the participation of small-scale distributed energy resources (DERs) aggregated in virtual power plants (VPPs) in wholesale electricity markets. The inherent uncertainty and variability of resources comprising VPPs can lead to imbalances between forecasted and metered outputs, potentially resulting in the deficient settlement of generation under imbalance settlement rules. To address this challenge, it is essential to manage variability in the planning phase and uncertainty in the operation phase. Most current research focuses on managing forecasting errors in the operational phase, with insufficient attention given to the planning phase. Here, to bridge this gap, this paper proposes an optimal combination strategy for DERs to maximize the market participation revenue of VPPs by proactively managing variability in the planning phase. To estimate the expected revenue, we conducted analyses for homogeneous and heterogeneous DERs using Monte Carlo simulations and genetic algorithms. Remarkably, the proposed method demonstrated approximately 8 % higher revenue compared to the neighboring group case when considering diversity in DER set configuration with equal proportions of photovoltaics and wind.

24 POWER TRANSMISSION AND DISTRIBUTION↗

DOE OSTI2025

ARCH: Large-scale knowledge graph via aggregated narrative codified health records analysis

Objective: Electronic health record (EHR) systems contain a wealth of clinical data stored as both codified data and free-text narrative notes (NLP). The complexity of EHR presents challenges in feature representation, information extraction, and uncertainty quantification. Here, to address these challenges, we proposed an efficient Aggregated naRrative Codified Health (ARCH) records analysis to generate a large-scale knowledge graph (KG) for a comprehensive set of EHR codified and narrative features. Methods: Using data from 12.5 million Veterans Affairs patients, ARCH first derives embedding vectors and generates similarities along with associated p-values to measure the strength of relatedness between clinical features with statistical certainty quantification. Next, ARCH performs a sparse embedding regression to remove indirect linkage between features to build a sparse KG. Finally, ARCH was validated on various clinical tasks, including detecting known relationships between entity pairs, predicting drug side effects, disease phenotyping, as well as sub-typing Alzheimer’s disease patients. Results: ARCH produces high-quality clinical embeddings and KG for over 60,000 codified and narrative EHR concepts. The KG and embeddings are visualized in the R-shiny powered web-API.3 ARCH achieved high accuracy in detecting EHR concept relationships, with AUCs of 0.926 (codified) and 0.861 (NLP) for similar EHR concepts, and 0.810 (codified) and 0.843 (NLP) for related pairs. It detected drug side effects with a 0.723 AUC, which improved to 0.826 after fine-tuning. Using both codified and NLP features, the detection power increased significantly. Compared to other methods, ARCH has superior accuracy and enhances weakly supervised phenotyping algorithms’ performance. Notably, it successfully categorized Alzheimer’s patients into two subgroups with varying mortality rates. Conclusion: The proposed ARCH algorithm generates large-scale high-quality semantic representations and knowledge graph for both codified and NLP EHR features, useful for a wide range of predictive modeling tasks.

Electronic health records↗

DOE OSTI2025

High-fidelity topochemical polymerization in single crystals, polycrystals, and solution aggregates

Topochemical polymerization (TCP) emerges as a leading approach for synthesizing single crystalline polymers, but is traditionally restricted to transformations in solid-medium. The complexity in achieving single-crystal-to-single-crystal (SCSC) transformations due to lattice disparities and the untapped potential of performing TCP in a liquid medium with solid-state structural fidelity present unsolved challenges. Herein, by using X-rays as the primary means to overcome crystal disintegration, we reveal the details of SCSC transformation during the TCP of chiral azaquinodimethane (AQM) monomers through in situ crystallographic analysis while spotlighting a rare metastable crystalline phase. Complementary in situ investigations of powders and thin films provide critical insights into the side-chain dependent polymerization kinetics of solid-state reactions. Furthermore, we enable TCP of AQM monomers in a liquid medium via an antisolvent-reinforced aggregated state, yielding polymer nanofibers with high crystallinity akin to that of solid-state. This study testifies high structural precision of TCP performed in different states and media, offering critical insights into the synthesis of processable nanostructured polymers with desired structural integrity.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2024

Increasing aggregate size reduces single-cell organic carbon incorporation by hydrogel-embedded wetland microbes

Abstract Microbial degradation of organic carbon in sediments is impacted by the availability of oxygen and substrates for growth. To better understand how particle size and redox zonation impact microbial organic carbon incorporation, techniques that maintain spatial information are necessary to quantify elemental cycling at the microscale. In this study, we produced hydrogel microspheres of various diameters (100, 250, and 500 μm) and inoculated them with an aerobic heterotrophic bacterium isolated from a freshwater wetland (Flavobacterium sp.), and in a second experiment with a microbial community from an urban lacustrine wetland. The hydrogel-embedded microbial populations were incubated with 13C-labeled substrates to quantify organic carbon incorporation into biomass via nanoSIMS. Additionally, luminescent nanosensors enabled spatially explicit measurements of oxygen concentrations inside the microspheres. The experimental data were then incorporated into a reactive-transport model to project long-term steady-state conditions. Smaller (100 μm) particles exhibited the highest microbial cell-specific growth per volume, but also showed higher absolute activity near the surface compared to the larger particles (250 and 500 μm). The experimental results and computational models demonstrate that organic carbon availability was not high enough to allow steep oxygen gradients and as a result, all particle sizes remained well-oxygenated. Our study provides a foundational framework for future studies investigating spatially dependent microbial activity in aggregates using isotopically labeled substrates to quantify growth.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2026

Dehydration-Driven Ion Aggregation and the Onset of Gelation in ZnCl2 Solution

A minimal model of ionic aggregation in concentrated ZnCl2 is developed, guided by molecular dynamics simulations with a machine-learned potential. It explicitly incorporates solvent-site depletion, correlated chloride binding, and allows for loops within Zn–Cl clusters. Dehydration drives two coordination-controlled structural changes: a crossover at Z=2 from predominantly isolated Zn-containing species to Cl-bridged clusters and the onset of gelation near Z≈3. The model reproduces the concentration-dependent trends observed in the molecular dynamics simulations with two fitted parameters, while the cluster-size distribution at the highest concentration is consistent with three-dimensional percolation scaling over the accessible range of cluster sizes.

25 ENERGY STORAGE↗

DOE OSTI2025

HexWeather: Hexagonal Spatial Data Aggregation for Weather-Driven Grid Resilience Analysis

Extreme weather accounts for over 8 0 % of major U.S. power outages since 2000, highlighting the need for spatial tools that align weather data with the irregular boundaries of electric infrastructure. This paper introduces HexWeather, a modular, resolution-aware framework for aggregating historical and forecasted weather data using Uber's H3 hexagonal spatial indexing system. Unlike traditional methods that rely on state or county-level grids, HexWeather enables weather analysis across custom geographies such as utility service areas where public datasets are often unavailable or misaligned. Using Open-Meteo data, we evaluate how H3 resolution affects anomaly detection, spatial variability, and forecast uncertainty across three scales: state, county, and utility. Results show that while coarse resolutions suffice for broad trend tracking, finer resolutions are essential for identifying localized variability and operational risks. By applying metrics like Z-score standard deviation and interquartile range, HexWeather quantifies the spatial spread of both historical anomalies and forecasted conditions, allowing users to assess resolution adequacy for each analysis. This framework supports rapid weather data reuse, reproducible anomaly detection, and predictive modeling for infrastructure resilience. By bridging spatial misalignment in traditional datasets and enabling retrospective and forward-looking analysis within the same pipeline, HexWeather lays the groundwork for better post event analysis, outage prediction, and resilience planning.

Morris, Jacob [ORNL]↗

DOE OSTI2025

Harnessing Virtual Power Plants Reliably: Enabling tools for increased observability, controllability, operation, and aggregation of distributed energy resources

Harnessing virtual power plants enhances the integration of distributed energy resources into utility grids for a sustainable energy future. Virtual power plants (VPPs) aggregate DERs to enhance resource adequacy and reduce emissions. U.S. utilities are exploring various technologies to manage DERs effectively. FERC Order 2222 allows DERs to participate in both wholesale and retail markets. Enhancing observability and controllability of behind-the-meter (BTM) DERs is essential for reliable grid operations. A hierarchical control architecture can improve coordination among residential energy resources. Field tests showed nearly 20% energy savings and 30% peak power reduction during grid events. Effective management of DERs requires enhanced situational awareness to prevent grid congestion. Integrating DER management systems (DERMS) with existing planning tools can improve operational security. Near-real-time grid models can validate optimal resource set points against resource uncertainty. Traditional uninterruptible power supplies (UPS) can be upgraded to support grid services and become part of VPPs. Upgrading UPS systems can reduce costs by 75% and unlock significant battery capacity. New battery management systems and grid-aware controllers are essential for optimizing UPS performance. Continued research and development are necessary to address challenges in integrating DERs into utility grids. Encouraging customer participation in pilot programs is vital for the evolution of VPPs. Here, the shift towards price-responsive DERs and VPPs is expected to enhance energy distribution efficiency.

24 POWER TRANSMISSION AND DISTRIBUTION↗