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At least 1,603 records · Page 89

SUNDIALS time integrators for exascale applications with many independent systems of ordinary differential equations

Many complex systems can be accurately modeled as a set of coupled time-dependent partial differential equations (PDEs). However, solving such equations can be prohibitively expensive, easily taxing the world’s largest supercomputers. One pragmatic strategy for attacking such problems is to split the PDEs into components that can more easily be solved in isolation. This operator splitting approach is used ubiquitously across scientific domains, and in many cases leads to a set of ordinary differential equations (ODEs) that need to be solved as part of a larger “outer-loop” time-stepping approach. The SUNDIALS library provides a plethora of robust time integration algorithms for solving ODEs, and the U.S. Department of Energy Exascale Computing Project (ECP) has supported its extension to applications on exascale-capable computing hardware. In this paper, we highlight some SUNDIALS capabilities and its deployment in combustion and cosmology application codes (Pele and Nyx, respectively) where operator splitting gives rise to numerous, small ODE systems that must be solved concurrently.

97 MATHEMATICS AND COMPUTING↗

Efficient numerical algorithm for multi-level ionization of high-atomic-number gases

An efficient numerical algorithm for laser driven multi-level ionization of high-atomic-number gases is proposed and implemented in an electromagnetic particle-in-cell code SPACE. The algorithm is based on analytical solutions to the system of differential equations describing ionization evolution. Using analytical solutions resolves the multiscale issue of ionization due to different characteristic time scales of ionization processes and the main code time step. Algorithm efficiency and memory requirements are significantly improved by using a locally reduced system of differential equations. The algorithm also assigns proper orbital quantum numbers and their projections to ionization states. The algorithm is verified and validated using experimental data.

Cheng, A. (ORCID:000000021945282X)↗

Linearised Fokker–Planck collision model for gyrokinetic simulations

We introduce a gyrokinetic, linearised Fokker–Planck collision model that satisfies conservation laws and is accurate at arbitrary collisionalities. The differential test-particle component of the operator is exact; the integral field-particle component is approximated using a spherical harmonic and a modified Laguerre polynomial expansion developed by Hirshman and Sigmar (1976 Phys. Fluids 19 1532). The numerical methods of the implementation in the δf-gyrokinetic code stella (Barnes et al 2019 J. Comput. Phys. 391 365–80) are discussed, and conservation properties of the operator are demonstrated. The collision model is then benchmarked against the collision model of the gyrokinetic solver GS2 in the limiting cases of a reduced test-particle collision operator and energy- and momentum-conserving operator. The accuracy of the full collision model is investigated by solving the parallel Spitzer-Härm problem for the transport coefficients. It is shown that retaining collisional energy flux and higher-order terms in the field-particle operator reduces errors in the transport coefficients from 10%–25% for a simple momentum- and energy-conserving model to under 1%.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Competition between roughness and strength for scale-dependent surfaces

Rocks famously have scale-dependent strength, yet the actual dependence is notoriously hard to measure or incorporate into any theoretical framework. Natural rough surfaces present an opportunity to solve the problem. Surfaces sliding in shear evolve as protrusions collide. These asperities can deform or break, thus creating a new surface shape. In particular, natural surfaces have roughness at all scales as well as scale-dependent strength. Based on a scaling analysis, we have previously suggested that the scale-dependent aspect ratio of steady-state surfaces should be proportional to the scale-dependent shear strain at yield. If true, scale-dependent strength could easily be inferred from natural surfaces. Thus, moving beyond the scaling argument to a rigorous treatment of scale-dependent strength for multiscale rough surfaces in shear is important. However, analytic frameworks for analyzing multiscale problems are challenging, as conventional continuum mechanics typically involves a single value for a material property across scales. Here, in this work, we build on the formalism of Persson (2001) that presents a method to compute contact area for rough surfaces with a prescribed topographic spectrum using a stochastic differential equation. The Persson formalism allows for plastic yield under normal loading of otherwise elastic materials and leaves open the possibility of scale-dependent yield stress. In this study, we pursue this route to develop a theory and numerical results for the yielding of a rough, elastoplastic surface with scale-dependent yield stress. Here, we examine surfaces for which the power spectrum of the topography 𝐶 and yield stress 𝑌 follow power laws as a function of scale 𝜆, such that 𝐶∼𝜆 −𝑚 and 𝑌∼𝜆 −𝑛 , respectively. In this formal treatment of the problem, we focus on surfaces in contact and the resulting yield and do not impose shear. Numerical solutions show that the deviation from the elastic scaling solution is bounded as expected by the prior 1D heuristic scaling argument that anticipates the Hurst exponent as 1−𝑛. We also show that the plasticity is expected to erode the contacts if 𝑚 is lower than 𝑛−3, which corresponds to a Hurst exponent lower than 1−𝑛/2. This result is rigorously sound for 2D, i.e., realistic surfaces, and quantitatively different than the prior scaling argument. The theory now permits a correspondingly quantitative approach to interpreting natural surfaces.

elasticity↗

Generic Discretization Library

The GenDiL library is a collection of C++ software abstractions designed to discretize and solve partial differential equations (PDEs) for high-performance computing (HPC) applications. Its primary focus is on modern C++ generic programming, which helps ensure portability across various hardware architectures. The central idea behind the library is to provide building blocks for numerical algorithms-such as discretization methods and iteration patterns-so that domain experts can focus on the math, rather than the low-level details of hardware or implementation. By defining abstractions for data types, iteration over computational grids, and scheduling of operations, the library isolates the high-level PDE algorithms from the platform-specific optimizations needed to achieve efficient performance.

Dudouit, Yohann [Lawrence Livermore National Labor↗

Analytical Study of the Tumbling Motions of Vehicles Entering Planetary Atmospheres

The tumbling motion of vehicles entering planetary atmospheres is analyzed. A differential equation governing the tumbling motion, its arrest, and the subsequent oscillatory motion is obtained and identified as the equation for the fifth Painleve transcendant. An approximate analytical solution for the transcendant is derived. Comparisons with results obtained from numerical integration of the exact equations of motion indicate that the solution for the angle-of-attack history is sufficiently accurate to be of practical use.

PLANETARY ENTRY↗

Use of numerically generated body-fitted coordinate systems for solution of the Navier-Stokes equations

A procedure for numerical solution of the time-dependent, two-dimensional incompressible Navier-Stokes equations that can treat the unsteady laminar flow about bodies of arbitrary shape, such as two-dimensional airfoils, multiple airfoils, and submerged hydrofoils, as naturally as it can deal with the flow about simple bodies. The solution is based on a method of automatic numerical generation of a general curvilinear coordinate system with coordinate lines coincident with all boundaries of a general multiconnected region containing any number of arbitrarily shaped bodies. The curvilinear coordinates are generated as the solution of two elliptical partial differential equations with Dirichlet boundary conditions, one coordinate being specified to be constant on each of the boundaries, and a distribution of the other being specified along the boundaries. The solution compares excellently with the Blasius boundary layer solution for the flow past a semiinfinite flat plate.

Thompson, J. F.↗

Numerical solution of flow problems using body-fitted coordinate systems

The technique of boundary-fitted coordinate systems is based on a method of automatic numerical generation of a general curvilinear coordinate system having a coordinate line coincident with each boundary of a general multi-connected region containing any number of arbitrarily shaped bodies. Once the curvilinear coordinate system is generated, any partial differential system of interest can be solved on this coordinate system by transforming the equations and solving the resulting system in finite difference approximation on the rectangular transformed plane. This method of automatic body-fitted curvilinear coordinate generation is used to construct finite-difference solutions of the full, time dependent Navier-Stokes equations for the unsteady viscous flow about arbitrary two-dimensional airfoils, or any other two-dimensional bodies. Finally, initial results for three-dimensional applications are also presented.

Thompson, J. F.↗

Numerical derivation of linear perturbation model from nonlinear real-time vehicle simulations - A means of validation and increased credibility

A numerical technique has been developed which generates linear perturbation models from nonlinear real-time aircraft vehicle simulations at Langley Research Center. The technique is very general and can be applied to simulations of any system described by nonlinear differential equations. Linear models about various trim conditions have been obtained from simulations of the Boeing 737, Northrop F5-E, Cessna 180, Sikorsky CH-54, and NASA/Army Rotor Systems Research Aircraft (RSRA). One use of the derived linear models is as a validation and verification tool for the nonlinear simulation.

Dieudonne, J. E.↗

Implicit finite difference methods on composite grids

Techniques for eliminating time lags in the implicit finite-difference solution of partial differential equations are investigated analytically, with a focus on transient fluid dynamics problems on overlapping multicomponent grids. The fundamental principles of the approach are explained, and the method is shown to be applicable to both rectangular and curvilinear grids. Numerical results for sample problems are compared with exact solutions in graphs, and good agreement is demonstrated.

Mastin, C. Wayne↗

Essentially nonoscillatory spectral Fourier methods for shock wave calculations

An essentially nonoscillatory spectral Fourier method for the solution of hyperbolic partial differential equations is presented. The method is based on adding a nonsmooth function to the trigonometric polynomials which are the usual basis functions for the Fourier method. The high accuracy away from the shock is enhanced by using filters. Numerical results confirm that essentially no oscillations develop in the solution.

Cai, Wei↗

The free compressible viscous vortex

The present study investigates the effects of compressibility on free (unsteady) viscous heat-conducting vortices. Analytical solutions are found in the limit of large but finite Reynolds number and small but finite Mach number. It is shown that the spreading of the vortex causes a radial flow. This flow is given by the solution of an ordinary differential equation, which gives the dependence of the radial velocity on the tangential velocity, density, and temperature profiles of the vortex. Estimates of the radial velocity found by solving this equation are found to be in good agreement with numerical solutions of the full equations. The equations for the viscous evolution are expanded in powers of Mach number to obtain detailed analytical solutions. It is shown that swirling axisymmetric compressible flows generate negative radial velocities far from the vortex core owing to viscous effects, regardless of the initial distributions of vorticity, density, and entropy.

Colonius, Tim↗

Estimating the path-average rainwater content and updraft speed along a microwave link

There is a scarcity of methods for accurately estimating the mass of rainwater rather than its flux. A recently proposed technique uses the difference between the observed rates of attenuation A with increasing distance at 38 and 25 GHz, A(38-25), to estimate the rainwater content W. Unfortunately, this approach is still somewhat sensitive to the form of the drop-size distribution. An alternative proposed here uses the ratio A38/A25 to estimate the mass-weighted average raindrop size Dm. Rainwater content is then estimated from measurements of polarization propagation differential phase shift (Phi-DP) divided by (1-R), where R is the mass-weighted mean axis ratio of the raindrops computed from Dm. This paper investigates these two water-content estimators using results from a numerical simulation of observations along a microwave link. From these calculations, it appears that the combination (R, Phi-DP) produces more accurate estimates of W than does A38-25. In addition, by combining microwave estimates of W and the rate of rainfall in still air with the mass-weighted mean terminal fall speed derived using A38/A25, it is possible to detect the potential influence of vertical air motion on the raingage-microwave rainfall comparisons.

Jameson, Arthur R.↗

Analysis and Testing of Plates with Piezoelectric Sensors and Actuators

Piezoelectric material inherently possesses coupling between electrostatics and structural dynamics. Utilizing linear piezoelectric theory results in an intrinsically coupled pair of piezoelectric constitutive equations. One equation describes the direct piezoelectric effect where strains produce an electric field and the other describes the converse effect where an applied electrical field produces strain. The purpose of this study is to compare finite element analysis and experiments of a thin plate with bonded piezoelectric material. Since an isotropic plate in combination with a thin piezoelectric layer constitutes a special case of a laminated composite, the classical laminated plate theory is used in the formulation to accommodated generic laminated composite panels with multiple bonded and embedded piezoelectric layers. Additionally, the von Karman large deflection plate theory is incorporated. The formulation results in laminate constitutive equations that are amiable to the inclusion of the piezoelectric constitutive equations yielding in a fully electro-mechanically coupled composite laminate. Using the finite element formulation, the governing differential equations of motion of a composite laminate with embedded piezoelectric layers are derived. The finite element model not only considers structural degrees of freedom (d.o.f.) but an additional electrical d.o.f. for each piezoelectric layer. Comparison between experiment and numerical prediction is performed by first treating the piezoelectric as a sensor and then again treating it as an actuator. To assess the piezoelectric layer as a sensor, various uniformly distributed pressure loads were simulated in the analysis and the corresponding generated voltages were calculated using both linear and nonlinear finite element analyses. Experiments were carried out by applying the same uniformly distributed loads and measuring the resulting generated voltages and corresponding maximum plate deflections. It is found that a highly nonlinear relationship exists between maximum deflection and voltage versus pressure loading. In order to assess comparisons of predicted and measured piezoelectric actuation, sinusoidal excitation voltages are simulated/applied and maximum deflections are calculated/measured. The maximum deflection as a function of time was determined using the linear finite elements analysis. Good correlation between prediction and measurement was achieved in all cases.

Bevan, Jeffrey S.↗

Subgrid Scale Modeling in Solar Convection Simulations using the ASH Code

The turbulent solar convection zone has remained one of the most challenging and important subjects in physics. Understanding the complex dynamics in the solar con- vection zone is crucial for gaining insight into the solar dynamo problem. Many solar observatories have generated revealing data with great details of large scale motions in the solar convection zone. For example, a strong di erential rotation is observed: the angular rotation is observed to be faster at the equator than near the poles not only near the solar surface, but also deep in the convection zone. On the other hand, due to the wide range of dynamical scales of turbulence in the solar convection zone, both theory and simulation have limited success. Thus, cutting edge solar models and numerical simulations of the solar convection zone have focused more narrowly on a few key features of the solar convection zone, such as the time-averaged di erential rotation. For example, Brun & Toomre (2002) report computational finding of differential rotation in an anelastic model for solar convection. A critical shortcoming in this model is that the viscous dissipation is based on application of mixing length theory to stellar dynamics with some ad hoc parameter tuning. The goal of our work is to implement the subgrid scale model developed at CTR into the solar simulation code and examine how the differential rotation will be a affected as a result. Specifically, we implement a Smagorinsky-Lilly subgrid scale model into the ASH (anelastic spherical harmonic) code developed over the years by various authors. This paper is organized as follows. In x2 we briefly formulate the anelastic system that describes the solar convection. In x3 we formulate the Smagorinsky-Lilly subgrid scale model for unstably stratifed convection. We then present some preliminary results in x4, where we also provide some conclusions and future directions.

Young, Y.-N.↗

Structured adaptive grid generation using algebraic methods

The accuracy of the numerical algorithm depends not only on the formal order of approximation but also on the distribution of grid points in the computational domain. Grid adaptation is a procedure which allows optimal grid redistribution as the solution progresses. It offers the prospect of accurate flow field simulations without the use of an excessively timely, computationally expensive, grid. Grid adaptive schemes are divided into two basic categories: differential and algebraic. The differential method is based on a variational approach where a function which contains a measure of grid smoothness, orthogonality and volume variation is minimized by using a variational principle. This approach provided a solid mathematical basis for the adaptive method, but the Euler-Lagrange equations must be solved in addition to the original governing equations. On the other hand, the algebraic method requires much less computational effort, but the grid may not be smooth. The algebraic techniques are based on devising an algorithm where the grid movement is governed by estimates of the local error in the numerical solution. This is achieved by requiring the points in the large error regions to attract other points and points in the low error region to repel other points. The development of a fast, efficient, and robust algebraic adaptive algorithm for structured flow simulation applications is presented. This development is accomplished in a three step process. The first step is to define an adaptive weighting mesh (distribution mesh) on the basis of the equidistribution law applied to the flow field solution. The second, and probably the most crucial step, is to redistribute grid points in the computational domain according to the aforementioned weighting mesh. The third and the last step is to reevaluate the flow property by an appropriate search/interpolate scheme at the new grid locations. The adaptive weighting mesh provides the information on the desired concentration of points to the grid redistribution scheme. The evaluation of the weighting mesh is accomplished by utilizing the weight function representing the solution variation and the equidistribution law. The selection of the weight function plays a key role in grid adaptation. A new weight function utilizing a properly weighted boolean sum of various flowfield characteristics is defined. The redistribution scheme is developed utilizing Non-Uniform Rational B-Splines (NURBS) representation. The application of NURBS representation results in a well distributed smooth grid by maintaining the fidelity of the geometry associated with boundary curves. Several algebraic methods are applied to smooth and/or nearly orthogonalize the grid lines. An elliptic solver is utilized to smooth the grid lines if there are grid crossings. Various computational examples of practical interest are presented to demonstrate the success of these methods.

Yang, Jiann-Cherng↗

SINDA - Systems Improved Numerical Differencing Analyzer

Capability to model fluid flow added. SINDA is software system developed to solve physical problems governed by diffusion-type equations mathematically modeled by lumped-parameter representations. Used as general thermal analyzer with resistor-and-capacitor-network representations. Adapted to wide range of problems represented by Fourier, Possion, Laplace, or other differential equations. Written in FORTRAN and Assembler.

Damico, Steve J.↗

WeakIdent: Weak formulation for identifying differential equation using narrow-fit and trimming

Data-driven identification of differential equations is an interesting but challenging problem, especially when the given data are corrupted by noise. When the governing differential equation is a linear combination of various differential terms, the identification problem can be formulated as solving a linear system, with the feature matrix consisting of linear and nonlinear terms multiplied by a coefficient vector. This product is equal to the time derivative term, and thus generates dynamical behaviors. The goal is to identify the correct terms that form the equation to capture the dynamics of the given data. We propose a general and robust framework to recover differential equations using a weak formulation with two new mechanisms, narrow-fit and trimming, for both ordinary and partial differential equations (ODEs and PDEs). The weak formulation facilitates an efficient and robust way to handle noise, and two new mechanisms, narrow-fit and trimming, improve the coefficient support and value recoveries respectively. For each sparsity level, Subspace Pursuit is utilized to find an initial set of support from the large dictionary. Then, we focus on highly dynamic regions (rows of the feature matrix), and error normalize the feature matrix in the narrow-fit step. The support is further updated via trimming the terms that contribute the least. Finally, the support set of features with the smallest Cross-Validation error is chosen as the result. A comprehensive set of numerical experiments are presented for both systems of ODEs and PDEs with various noise levels. The proposed method gives a robust recovery of the coefficients, and a significant denoising effect which can handle up to 100% noise-to-signal ratio for some equations. We compare the proposed method with several state-of-the-art algorithms for the recovery of differential equations.

97 MATHEMATICS AND COMPUTING↗