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At least 1,603 records · Page 89

Selection of a Pair of Experiments to Optimally Reduce Uncertainty in Targeted Nuclear Data

We propose a novel process to select a pair of differential and integral experiments that best reduce uncertainties in targeted 239 ⁢Pu nuclear data while compressing the current nuclear data pipeline from 20 to 3 years. 239⁢ Pu nuclear data are poorly understood for neutrons in the intermediate energy range due to sparsity and uncertainty in historical experiments. New experiments targeting this range will enable better understanding of these nuclear data, but choosing the ideal experiments to conduct is challenging. Beginning with a prior distribution represented by samples of nuclear data generated from theory, generalized least squares adjustments are made to incorporate data from historical experiments. To quantify potential uncertainty reduction obtainable from a pair of candidate experiments, we compute the D-optimality criterion of the posterior covariance of intermediate energy range nuclear data compared to the equivalent covariance after additional adjustment to the pair of candidate experiments. Repeating the process for each of many candidate pairs facilitates the final selection. Results support 63⁢ Cu total cross section measurements for differential experiments and alumina and alumina/graphite configurations for integral experiments. This analysis enables choosing differential and integral experiments to be executed concurrently while shortening decision times relative to the current nuclear data pipeline.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Iterative ML and Experiments for Emerging VOCs

SAND2026-17074O Iterative ML and Experiments for Emerging VOCs is a tool that analyzes and predicts the behaviors of SARS-CoV-2 variants. It processes experimental data on ACE2 (the receptor for the SARS-CoV-2 virus that allows it to infect the cell) and antibody binding using machine learning models, including neural networks, to forecast ACE2 interactions and variant expression. The tool employs transfer learning and global epistasis modeling, integrating public datasets with proprietary data to enhance prediction accuracy. Additionally, it fits concentration-response curves to determine dissociation constants and generates visualizations to support research findings, thereby aiding in the identification of new antibodies for emerging variants of concern. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Sheffield, Thomas [Sandia National Lab. (SNL-NM), ↗

Community Requirements Meta-Analysis: Characterizing Needs and Opportunities for HPDF

This High Performance Data Facility (HPDF) Project is creating a new scientific user facility to provide advanced infrastructure for data-intensive science, supporting the DOE’s Office of Science (SC) community. HPDF’s mission is to enable and accelerate scientific discovery by delivering state-of-the-art data management infrastructure, capabilities, and tools. This meta-analysis examines the needs of the breadth of the SC community, captured in publicly available community reports or mission documents. The meta-analysis identifies and provides initial characterization of fifteen core requirements for the HPDF Project team to consider during the conceptual design phase. The fifteen requirements illustrate how scientific work among SC communities requires modern, seamless user experiences across the ASCR Ecosystem to advance the use of large volumes of heterogeneous data. The scientific community requires support for the missing middle of compute between local and HPC to interactively and collaboratively use growing datasets. Data producers and end users will benefit from enhanced data catalogs and portals that improve data access through advanced search of well curated data. The fifteen requirements are examined here organized across five themes for discussion. Examples in each theme illustrate the array of scientific needs that convey the important role that the fully realized and operational High Performance Data Facility will be able to play as an integral part of the evolving ASCR Ecosystem. Our amalgamated data tables from ESnet reports demonstrate ranges to the volumes of data HPDF must be concerned with, but limitations are inherent to this meta-analysis (see Key Challenges & Limitations). Feedback and validation of these requirements along with additional details and emergent community requirements will be gathered through user research and design activities.

97 MATHEMATICS AND COMPUTING↗

Data Center Market Report

The data center market is poised to explode in the coming decade due to undeniable drivers such as continued adoption of generative AI, increased data storage needs, and enterprise integration of AI in numerous industries [1] [2] [3]. Scalable power and increased computational capacity are at the forefront of considerations for hyperscalers, the major cloud service providers in this space. Lawrence Livermore National Laboratory is uniquely poised to help with informed decision making for data center market leaders during this phase of explosive expansion. National grid modeling expertise and cutting edge innovations in computer cooling systems place LLNL in an enviable position for creating economic impact in the data center industry by leveraging its expertise in these areas which can help the data center market keep up with growing demand.

97 MATHEMATICS AND COMPUTING↗

Human‐induced salinity changes impact marine organisms and ecosystems

Abstract Climate change is fundamentally altering marine and coastal ecosystems on a global scale. While the effects of ocean warming and acidification on ecology and ecosystem functions and services are being comprehensively researched, less attention is directed toward understanding the impacts of human‐driven ocean salinity changes. The global water cycle operates through water fluxes expressed as precipitation, evaporation, and freshwater runoff from land. Changes to these in turn modulate ocean salinity and shape the marine and coastal environment by affecting ocean currents, stratification, oxygen saturation, and sea level rise. Besides the direct impact on ocean physical processes, salinity changes impact ocean biological functions with the ecophysiological consequences are being poorly understood. This is surprising as salinity changes may impact diversity, ecosystem and habitat structure loss, and community shifts including trophic cascades. Climate model future projections (of end of the century salinity changes) indicate magnitudes that lead to modification of open ocean plankton community structure and habitat suitability of coral reef communities. Such salinity changes are also capable of affecting the diversity and metabolic capacity of coastal microorganisms and impairing the photosynthetic capacity of (coastal and open ocean) phytoplankton, macroalgae, and seagrass, with downstream ramifications on global biogeochemical cycling. The scarcity of comprehensive salinity data in dynamic coastal regions warrants additional attention. Such datasets are crucial to quantify salinity‐based ecosystem function relationships and project such changes that ultimately link into carbon sequestration and freshwater as well as food availability to human populations around the globe. It is critical to integrate vigorous high‐quality salinity data with interacting key environmental parameters (e.g., temperature, nutrients, oxygen) for a comprehensive understanding of anthropogenically induced marine changes and its impact on human health and the global economy.

54 ENVIRONMENTAL SCIENCES↗

Deep Learning for Automated Identification of Eels in Sonar Data

Freshwater eels, such as the American eel (Anguilla rostrata) present numerous challenges related to safe downstream fish passage at hydroelectric facilities. One of those challenges is effective monitoring of their abundance, movements, and behavior to facilitate design and operation of eel protection and passage facilities. A previous EPRI study documented the ability of human analysts to reliably identify American eels in data obtained with a 1100/1800 kHz, multibeam sonar. This report describes a project to develop deep learning (a subset of artificial intelligence) tools to automate the time-consuming, subjective process of eel identification in multibeam sonar data. The project exploited new data collected in the laboratory and the existing data from the prior EPRI field study to develop and test deep learning and other data analytic tools, including wavelet filtering, differencing for static object removal, and convolutional neural network analysis. The analysis of the laboratory data demonstrated feasibility of the approach, revealed object characteristics observed with the sonar that distinguish eels from similarly sized and shaped acoustic targets, and provided additional data for algorithm selection and training. Deep learning algorithms trained and tested on the laboratory data alone achieved accuracy rates of greater than 98% when classifying acoustic images of eels and similar-sized neutrally buoyant sticks. The algorithm trained and tested on the pre-existing field data alone, and yielded classification accuracy of 9.3% false positives and 13.3% false negatives when distinguishing between eels and sticks/PVC pipes based on video clips (i.e., multiple, consecutive images). This performance is comparable to the classification accuracy achieved by human analysts in the prior study. The deep learning algorithm trained on a combination of video clips obtained in the laboratory and the field and tested on video clips from the field, was able to distinguish eels from sticks and PVC pipes (a river debris analog) of similar size with 100% accuracy. Outreach to the hardware, software, and end-user communities early in the project helped to identify needs and specify the application space. Outreach to those communities at the end of the project communicated project results and opportunities for further development. The project achieved proof of concept for automated identification of eel in multibeam sonar data. Future work should focus on acquisition of additional data for more robust algorithm training and testing; modification of the software tools to accommodate multiple acoustic targets in the acoustic field at a given time; identification of additional object classes; incorporation of motion in the object identification and classification algorithms; operationalizing the software tools, including integration with other existing sonar data analysis tools; and partnering with hardware and software providers for distribution of the software tools with their commercial products.

13 HYDRO ENERGY↗

A systems genetics approach to deciphering the effect of dosage variation on leaf morphology in Populus

Abstract Gene copy number variation is frequent in plant genomes of various species, but the impact of such gene dosage variation on morphological traits is poorly understood. We used a large population of Populus carrying genomically characterized insertions and deletions across the genome to systematically assay the effect of gene dosage variation on a suite of leaf morphology traits. A systems genetics approach was used to integrate insertion and deletion locations, leaf morphology phenotypes, gene expression, and transcriptional network data, to provide an overview of how gene dosage influences morphology. Dosage-sensitive genomic regions were identified that influenced individual or pleiotropic morphological traits. We also identified cis-expression quantitative trait loci (QTL) within these dosage QTL regions, a subset of which modulated trans-expression QTL as well. Integration of data types within a gene co-expression framework identified co-expressed gene modules that are dosage sensitive, enriched for dosage expression QTL, and associated with morphological traits. Functional description of these modules linked dosage-sensitive morphological variation to specific cellular processes, as well as candidate regulatory genes. Together, these results show that gene dosage variation can influence morphological variation through complex changes in gene expression, and suggest that frequently occurring gene dosage variation has the potential to likewise influence quantitative traits in nature.

Biochemistry & Molecular Biology↗

The Data Foundry: Secure Collaboration for the Geothermal Industry: Preprint

The Data Foundry provides secure, cloud-based storage and universal access to digital information, enabling the greater geothermal industry to collaborate seamlessly with the Department of Energy (DOE), national labs, universities, and private organizations. Originally developed to support the EGS Collab project, the Data Foundry has been expanded to support FORGE, EDGE, and other DOE-funded projects, some collaborative, some private, by providing each project with a secure space and the ability to fine-tune individual access controls. In response to user feedback, it now also features improved integration with DOE’s Geothermal Data Repository (GDR), to provide a clear and convenient pathway from collaboration to publication, and to register collaborative data projects with well-known data registries like Data.gov and the National Geothermal Data System (NGDS). This paper will explore how recent concerns raised by data-centric, proprietary projects have informed development on the Data Foundry and highlight improvements designed to streamline workflows, improve access control, and promote the timely dissemination of information to the geothermal industry.

Data Foundry↗

Sample IEEE123 Bus system for OEDI SI

Time series load and PV data from an IEEE123 bus system. An example electrical system, named the OEDI SI feeder, is used to test the workflow in a co-simulation. The system used is the IEEE123 test system, which is a well studied test system (see link below to IEEE PES Test Feeder), but some modifications were made to it to add some solar power modules and measurements on the system. The aim of this project is to create an easy-to-use platform where various types of analytics can be performed on a wide range of electrical grid datasets. The aim is to establish an open-source library of algorithms that universities, national labs and other developers can contribute to which can be used on both open-source and proprietary grid data to improve the analysis of electrical distribution systems for the grid modeling community. OEDI Systems Integration (SI) is a grid algorithms and data analytics API created to standardize how data is sent between different modules that are run as part of a co-simulation. The readme file included in the S3 bucket provides information about the directory structure and how to use the algorithms. The sensors.json file is used to define the measurement locations.

123 bus↗

dCache - Keeping up With the Evolution of Science

The dCache project provides open-source software deployed internationally to satisfy ever more demanding storage requirements of various scientific communities. Its multifaceted approach provides an integrated way of supporting different use-cases with the same storage, from high throughput data ingest, through wide access and easy integration with existing systems, including event driven workflow management. With this presentation, we will show some of the recent developments that optimize data management and access to maximise the gain from stored data.

Mkrtchyan, Tigran↗

A Modularized Urban Scale Building Energy Modeling Framework Designed with An Open Mind

In recent years, physics-based building energy modeling (BEM) has started being used to evaluate the performance of buildings in the context of connected communities and on an urban scale to study their aggregated energy use, interactions, and impacts on the energy supply infrastructure and environment. The development of urban-scale BEM solutions needs extensive effort. Existing attempts tend to focus on different aspects of BEM on an urban scale, such as collecting as-built building data from different information sources, integrating geometry modeling with geographic information systems (GISs), representing operational and occupancy profiles, automating workflow, processing and visualizing the results, and conducting large-scale simulations. Urban-scale BEM development would benefit from multi-disciplinary research areas and from an open platform to adopt advancements on data sources and tools. For these purposes, this research proposes a modularized bottom-up model creation and simulation framework that is built on the state-of-the-art BEM tools and can accommodate different building stock data. This framework uses a standardized schema to describe building design and operational characteristics, and it can be instantiated from different building survey datasets with heterogeneous structures. The paper demonstrates how thousands of surveyed buildings from the 2012 U.S. Energy Information Administration’s Commercial Buildings Energy Consumption Survey (CBECS) were one-to-one converted to EnergyPlus models through the schema and the model generation process, then simulated with distributed computing, and their results are summarized.

Lei, Xuechen↗

PRODeepSyn: predicting anticancer synergistic drug combinations by embedding cell lines with protein–protein interaction network

Abstract Although drug combinations in cancer treatment appear to be a promising therapeutic strategy with respect to monotherapy, it is arduous to discover new synergistic drug combinations due to the combinatorial explosion. Deep learning technology holds immense promise for better prediction of in vitro synergistic drug combinations for certain cell lines. In methods applying such technology, omics data are widely adopted to construct cell line features. However, biological network data are rarely considered yet, which is worthy of in-depth study. In this study, we propose a novel deep learning method, termed PRODeepSyn, for predicting anticancer synergistic drug combinations. By leveraging the Graph Convolutional Network, PRODeepSyn integrates the protein–protein interaction (PPI) network with omics data to construct low-dimensional dense embeddings for cell lines. PRODeepSyn then builds a deep neural network with the Batch Normalization mechanism to predict synergy scores using the cell line embeddings and drug features. PRODeepSyn achieves the lowest root mean square error of 15.08 and the highest Pearson correlation coefficient of 0.75, outperforming two deep learning methods and four machine learning methods. On the classification task, PRODeepSyn achieves an area under the receiver operator characteristics curve of 0.90, an area under the precision–recall curve of 0.63 and a Cohen’s Kappa of 0.53. In the ablation study, we find that using the multi-omics data and the integrated PPI network’s information both can improve the prediction results. Additionally, the case study demonstrates the consistency between PRODeepSyn and previous studies.

Wang, Xiaowen↗

Perceived Costs and Benefits of ICON Science and Foundational Documents associated with “Integrated, Coordinated, Open, and Networked (ICON) Science to Advance the Geosciences: Introduction and Synthesis of a Special Collection of Commentary Articles"

This data package is associated with the publication "Integrated, Coordinated, Open, and Networked (ICON) Science to Advance the Geosciences: Introduction and Synthesis of a Special Collection of Commentary Articles" in Earth and Space Science (Goldman et al. 2022; https://doi.org/10.1029/2021EA002099). The manuscript is an introductory article for a special collection of commentary articles across 19 geoscience disciplines that explore the challenges and opportunities associated with the use of ICON science principles. These principles focus on research intentionally designed to be Integrated, Coordinated, Open, and Networked (ICON) with the goal of maximizing mutual benefit (among stakeholders) and cross-system transferability of science outcomes. This data package contains data, figures, and R scripts associated with the cost/benefit analysis presented in the manuscript. The writing teams involved in the special collection placed each letter of ICON on a plot with perceived cost on one axis and perceived benefit on the other to summarize their perceptions of pursuing each principle of ICON science. These data were subsequently quantified and analyzed. Files are saved as .csv, .R, and .pdf. This data package also contains (1) the public foundational and instructional documents that enabled the crowdsourced creation of the special collection; (2) file-level metadata (flmd) that lists each file in the data package with a description; (3) data dictionary (dd) that defines column headers that appear in csv files. Files are saved as .pdf and .csv.

54 ENVIRONMENTAL SCIENCES↗

Ten questions concerning low-cost indoor air quality sensors: Perspectives from research and practice

Low-cost indoor air quality (IAQ) sensors are increasingly being used in homes and commercial and public buildings, driven by growing concerns about the impact of air on health, cognitive performance, and occupant wellbeing. These sensors offer a potentially transformative opportunity to increase spatial and temporal coverage of IAQ monitoring at a fraction of the cost of conventional reference instruments. However, their widespread use raises questions around accuracy, calibration, placement, data handling and interpretation, and integration into existing standards and workflows. This paper presents ten critical questions concerning the use of low-cost IAQ sensors in buildings, drawing on the latest empirical research, field deployments, and emerging practice. It discusses potential frameworks for deployment and evaluation, examines current sensor capabilities for measuring common pollutants, identifies methodological gaps in validation and uncertainty quantification, and outlines the extent to which existing IAQ standards can accommodate sensor-based evidence. The paper also explores how monitoring needs and deployment models vary by building type, the potential of real-time IAQ data to support building operations, and the ethical and legal implications of widespread sensor use. While significant challenges remain in ensuring data quality and building stakeholder trust, new applications are emerging through open data initiatives and advances in analytics and visualization. As the technology, science, and standards co-evolve, low-cost IAQ sensors are poised to become integral to routine building operation, building science, and environmental health research.

Parkinson, Thomas↗

Evaluation of Converter Performance Considering Static and Dynamic Device Part-to-Part Variability

This paper presents a methodology to incorporate and analyze the impact of semiconductor device part-to-part variation on power converter performance. By integrating extensive static and dynamic device characterization data with an automated compact model generation process that reflects manufacturing variability, device models with inherent variability features are utilized in converter simulations for a comprehensive assessment of performance impacts. The traditional converter performance evaluation process typically yields fixed efficiency values, often dismissing the inherent part-to-part variability caused by the manufacturing process of semiconductor devices. To address this limitation, a large population of devices was characterized to capture variations in static parameters-such as transfer, output, and capacitance characteristics-as well as dynamic behaviors, including switching losses. This data-driven approach enables the development of individual compact models, which were then integrated into converter simulations to evaluate efficiency ranges rather than single point estimated values. The converter simulation results show that part-to-part component variation can lead to significant efficiency deviations, exceeding several percentage points in high-power conversion applications. By offering a more accurate representation of converter behavior under real-world manufacturing conditions, this methodology enables designers to anticipate performance variability, improving the robustness of power converter designs.

device characterization↗

Panorama 360 (Final Report)

This is the final technical report for the DOE-funded Panorama 360 project. Panorama 360 provided a resource for the collection, analysis, and sharing of performance data about end-to-end scientific workflows executing on DOE facilities. The work focused on workflows that include experimental data generation at DOE facilities. The main activities of Panorama 360 include the development of: 1. A distributed repository that stores different types of workflow execution data (e.g., point and time series performance traces at fine- and coarse-grained levels); 2. A set of open-source data capture, curation, and publishing tools fully integrated with a state-of-the-art workflow management system that automates data ingestion to the repository and enables users to discover, query, and process data from the repository; 3. A set of analysis algorithms and machine learning based tools to perform analysis and characterization of the gathered data, which can be used to detect anomalous performance or system faults; and 4. Best practices and recommendations for workflow evaluation, analysis, execution, and architectures.

97 MATHEMATICS AND COMPUTING↗

Panorama 360 (Final Report)

This final technical report from the lead institution, USC grant #DE-SC0012636, serves as the final technical report for collaborative institution UNC-CH grant #DE-SC0012390. The goal was to develop a repository and associated capabilities for data collection, ingestion, and analysis for a broad class of DOE applications that span experimental and simulation science workflows. In particular, this work focuses on workflows that include experimental data generation at DOE facilities. The main activities of Panorama 360 include the development of: (1) A distributed repository that stores different types of workflow execution data (e.g., point and time series performance traces at fine- and coarse-grained levels); (2) A set of open-source data capture, curation, and publishing tools fully integrated with a state-of-the-art workflow management system that automates data ingestion to the repository and enables users to discover, query, and process data from the repository; (3) A set of analysis algorithms and machine learning based tools to perform analysis and characterization of the gathered data, which can be used to detect anomalous performance or system faults; and (4) Best practices and recommendations for workflow evaluation, analysis, execution, and architectures.

97 MATHEMATICS AND COMPUTING↗

Deep Design Data Portal (D3P) v0.01

The Deep Design Data Portal (D3P) tool was developed to demonstrate how readily accessible data sources, such as building energy model reports for design and baseline energy performance data for projects, can provide the data required for reporting to an industry initiative (AIA 2030 commitment), as well as more detailed data that makes the industry dataset more valuable to all stakeholders, enabling project level analysis and analysis of BEM industry trends. D3P provides an easier and less time-consuming way for firms to auto-extract data from this data source, compared to the current reporting workflows of the firms. The BEM reports are the first of several data sources that D3P could integrate. D3P also provides the ability for firms to review, compare, and evaluate the performance of their projects to not only their portfolio, but also to the larger anonymized industry dataset created each time a project is added to D3P. The intent of D3P is to become part of a data-sharing ecosystem to assist creating large anonymized industry datasets that are accessible to industry.

Regnier, Cynthia [Lawrence Berkeley National Labor↗