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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 1,603 records · Page 89
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Ion-dependent protein–surface interactions from intrinsic solvent response

Significance Hard–soft interfaces between inorganic surfaces and biomolecules promote self-assembly processes with broad implications in biogeochemistry, energy sciences, nanomedicine, and origins of life. Yet, detailed molecular-scale understanding of inorganic–biomolecule interactions and their dependence on solution conditions is missing. We present a theory for the initial stages of inorganic–biomolecule assembly based on the far-field response of water, using experimentally characterized interactions between muscovite surfaces and mica-binding proteins as model systems. Our work connects molecular details of the solution to assembly outcomes and suggests the initial driving forces for assembly are dominated by long-range, ion-specific interactions. The connections made between interfacial structure and long-range surface–biomolecule interactions provide insights toward a predictive understanding of biomolecular self-assembly on mineral surfaces.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
NASA NTRS1998

Analysis of the Diurnal Cycle of Precipitation and its Relation to Cloud Radiative Forcing Using TRMM Products

In order to improve our understanding of the interactions between clouds, radiation, and the hydrological cycle simulated in the Colorado State University General Circulation Model (CSU GCM), we focused our research on the analysis of the diurnal cycle of precipitation, top-of-the-atmosphere and surface radiation budgets, and cloudiness using 10-year long Atmospheric Model Intercomparison Project (AMIP) simulations. Comparisons the simulated diurnal cycle were made against the diurnal cycle of Earth Radiation Budget Experiment (ERBE) radiation budget and International Satellite Cloud Climatology Project (ISCCP) cloud products. This report summarizes our major findings over the Amazon Basin.

Randall, David A.↗
DOE OSTI2014

Importance of phospholipid bilayer integrity in the analysis of protein–lipid interactions

Highlights: • We show long-term mechanical stabilization of solid supported bilayers. • Bilayer integrity is essential for the investigation of protein–lipid interactions. • Protein adsorption to a bilayer containing defects causes membrane destruction. - Abstract: The integrity of supported phospholipid bilayer membranes is of crucial importance for the investigation of lipid–protein interactions. Therefore we recorded the formation of supported membranes on SiO{sub 2} and mica by quartz crystal microbalance and controlled the integrity by atomic force microscopy. This study aims to analyze how membrane defects affect protein–lipid interactions. The experiments focused on a lipid mixture of POPC/DOPC/Chol/POPS/PI(4,5)P{sub 2} (37:20:20:20:3) and the binding of the peripheral membrane associated protein annexin A2. We found that formation of a continuous undisturbed bilayer is an indispensable precondition for a reliable determination and quantification of lipid–protein-interactions. If membrane defects were present, protein adsorption causes membrane disruption and lipid detachment on a support thus leading to false determination of binding constants. Our results obtained for PI(4,5)P{sub 2} and cholesterol containing supported membranes yield new knowledge to construct functional surfaces that may cover nanoporous substrates, form free standing membranes or may be used for lab-on-a-chip applications.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2019

Structural features of sodium silicate glasses from reactive force field-based molecular dynamics simulations

Atomistic computer simulations can offer insights into silicate glass-environment interactions with the recent development of reactive potentials. Yet, the accuracy of generated glass structures with these potential was usually not fully examined. In this paper, the capability of the reactive force field (ReaxFF) to describe the short and medium range structure features of sodium silicate glasses in molecular dynamics simulations is investigated by comparing a widely used partial charge pairwise potential and available experimental data. Glass structure information such as pair distribution function (PDF), coordination number, Qn species, neutron broadened structure factor, and X-ray broadened structure factor of the glass structures from ReaxFF simulations were calculated and compared to evaluate the generated glass structure. Advantages and limitations of the potentials and glass forming procedures, as well as areas of further improvement, were discussed. The results show that the recently refined ReaxFF parameters through the proposed procedure enable the simulations of sodium silicate glass structures with minimal defects, which paves the way to investigate water-glass interaction mechanisms with the reactive enabled potentials.

36 MATERIALS SCIENCE↗
DOE OSTI2025

Dark magnetohydrodynamics: Black hole accretion in superradiant dark photon clouds

Black holes threaded by massive vector fields can be subject to a superradiant instability, growing a cloud of massive vector particles around it. In this work, we consider what happens if such a dark matter candidate field mimicking a dark photon interacts with an accretion flow onto the black hole. By including a kinetic mixing term with the standard model photon, we extend the commonly used equations of general-relativistic magnetohydrodynamics to a dark photon constituent. The coupling to the dark photon then appears as an effective dynamo term together with a dark Lorentz force acting on the accreting matter. We numerically study the interactions between the superradiant dark photon cloud and the inner accretion flow by solving the coupled system in full numerical relativity. By parameterically varying the mixing parameter between the dark and standard model sector, we provide a first investigation of how the accretion flow could be modified. In conclusion, depending on the coupling strength, our solutions exhibit increased wind launching, as well as oscillation modes in the disk.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2019

Aerosol Direct Radiative and Cloud Adjustment Effects on Surface Climate over Eastern China: Analyses of WRF Model Simulations

The WRF-simulated changes in clouds and climate due to the increased anthropogenic aerosols for the summers of 2002–08 (vs the 1970s) over eastern China were used to offline calculate the radiative forcings associated with aerosol–radiation (AR) and aerosol–cloud–radiation (ACR) interactions, which subsequently facilitated the interpretation of surface temperature changes. During this period, the increases of aerosol optical depth (ΔAOD) averaged over eastern China range from 0.18 in 2004 to 0.26 in 2007 as compared to corresponding cases in the 1970s, and the multiyear means (standard deviations) of AR and ACR forcings at the surface are −6.7 (0.58) and −3.5 (0.63) W m −2 , respectively, indicating the importance of cloud changes in affecting both the aerosol climate forcing and its interannual variation. The simulated mean surface cooling is 0.35°C, dominated by AR and ACR with a positive (cooling) feedback associated with changes in meteorology (~10%), and two negative (warming) feedbacks associated with decreases in latent (~70%) and sensible (~20%) heat fluxes. More detailed spatial characteristics were analyzed using ensemble simulations for the year 2008. Three regions—Jing-Jin-Ji (ΔAOD ~ 0.63), Sichuan basin (ΔAOD ~ 0.31), and middle Yangtze River valley (ΔAOD ~ 0.26)—at different climate regimes were selected to investigate the relative roles of AR and ACR. While the AR forcing is closely related to ΔAOD values, the ACR forcing presents different regional characteristics owing to cloud changes. In addition, the surface heat flux feedbacks are also different between regions. The study thus illustrates that ACR forcing is useful as a diagnostic parameter to unravel the complexity of climate change to aerosol forcing over eastern China.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2014

Depolarized light scattering and dielectric response of a peptide dissolved in water

The density and orientational relaxation of bulk water can be separately studied by depolarized light scattering (DLS) and dielectric spectroscopy (DS), respectively. Here, we ask the question of what are the leading collective modes responsible for polarization anisotropy relaxation (DLS) and dipole moment relaxation (DS) of solutions involving mostly hydrophobic solute-water interfaces. We study, by atomistic molecular dynamics simulations, the dynamics and structure of hydration water interfacing N-Acetyl-leucine-methylamide dipeptide. The DLS response of the solution is consistent with three relaxation processes: bulk water, rotations of single solutes, and collective dipole-induced-dipole polarizability of the solutes, with the time-scale of 130–200 ps. No separate DLS response of the hydration shell has been identified by our simulations. Density fluctuations of the hydration layer, which largely contribute to the response, do not produce a dynamical process distinct from bulk water. We find that the structural perturbation of the orientational distribution of hydration waters by the dipeptide solute is quite significant and propagates ∼3−5 hydration layers into the bulk. This perturbation is still below that produced by hydrated globular proteins. Despite this structural perturbation, there is little change in the orientational dynamics of the hydration layers, compared to the bulk, as probed by both single-particle orientational dynamics and collective dynamics of the dipole moment of the shells. There is a clear distinction between the perturbation of the interfacial structure by the solute-solvent interaction potential and the perturbation of the interfacial dynamics by the corresponding forces.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2012

Mesoscale Simulation of Proton Transport in Proton Exchange Membranes

Previous efforts to model proton transport through fuel cell membranes have largely focused on disparate length scales: molecular dynamics at the atomistic level and fuel cell stack engineering approaches at the macroscale. A new multiscale approach to bridge these extremes is proposed in this work which combines concepts from coarse-grained (CG) modeling with smoothed particle hydrodynamics (SPH) to capture the qualitative morphology and transport behavior of a proton exchange membrane at the length scale of tens of nanometers. This method allows for connection to atomistic simulations via the inclusion of transport coefficients from molecular dynamics and coarse-grained forces derived for the polymer backbone, side chain, proton, and water interactions. Information pertaining to macroscopic conductivity is obtained by volume averaging based on the flux and chemical potential fields within the membrane. Proton transport is effectively coarse-grained via introduction of a composition variable associated with each interacting site which carries the field information. By combining this technique with local electrostatics and coordinate dependent diffusion constants, the effects of double layer formation within the water pores and the influence of proximity to sulfonate groups on transport is recovered. The combined CG-SPH method is validated and subsequently applied to an equilibrated hydrated Nafion structure with a box length of 40 nm. The resulting conductivities calculated for the material agree very well with trends from experiment and provide insight into the complex interplay of morphology, proton distribution, and diffusion coefficients at a length scale that can be expanded beyond feasible atomistic molecular dynamics simulations to capture the effects of mesoscopic morphology on proton conduction.

Jorn, Ryan↗
DOE OSTI2020

INTEGRATION OF FLEX EQUIPMENT AND OPERATOR ACTIONS IN PLANT FORCE-ON-FORCE MODELS WITH DYNAMIC RISK ASSESSMENT

The overall operation and maintenance cost to protect nuclear power plants accounts for approximately 7% of the total cost of power generation, with labor accounting for half of this cost. In the current research, from interaction with utilities and other stakeholders, it was determined that physical security forces account for nearly 20% of the entire workforce at several nuclear power plants. Labor costs continue to rise in the U.S., so any measures to reduce the cost of operating a nuclear power plant will need to include a reduction in labor. The physical security pathway within the DOE’s Light Water Reactor Sustainability program aims to lower the cost of physical security through directed research into modeling and simulation, application of advanced sensors or deployment of advanced weapons. This report presents a modeling and simulation framework for integrating Diverse and Flexible Mitigation Capability (FLEX) portable equipment performance with Force on Force models of a plant’s physical security posture. The generic framework is described in detail, followed by a case study of modeling an adversarial attack aimed at causing a radiological release by sabotaging the plant’s power supply and its ultimate heat sink capabilities at a hypothetical nuclear power plant. Two different FLEX deployment strategies, series and parallel, are modeled with distinct timelines. The results of the adversarial attack modeled in a commercial Force on Force tool are integrated with the FLEX deployment model in INL’s dynamic modeling tool EMRALD. Monte Carlo simulation is used to model the distribution of the timeline in FLEX deployment strategies. The results demonstrate that, even in the extreme case of a successful adversarial attack, deployment of FLEX equipment can result in a significantly high likelihood of preventing radiological release. The modeling and simulation framework integrating FLEX equipment with Force on Force models enables the nuclear power plants to credit FLEX portable equipment in the plant security posture, resulting in an efficient and optimized physical security.

97 MATHEMATICS AND COMPUTING↗
NASA NTRS1980

Numerical simulation of stratospheric sudden warmings with a primitive equation spectral model

A 26-level primitive equation spherical harmonic spectral model allowing for wave-wave and wave-zonal flow interactions is presented for the study of stratospheric sudden warmings. The warmings are simulated by the forcing of a single planetary wave at the tropopause. Four numerical experiments were performed. Nonlinear wave-wave interactions appear to play an important role in the evolution of the flow and temperature fields in the middle to upper stratosphere. In the case involving both wave-wave and wave-zonal flow interactions, this was manifested by the split in the initial polar vortex into a quasi-wave number 2 pattern. In the cases at 60 deg N, easterlies develop first in the upper mesosphere and descend gradually. About the same time or a little later, easterlies also develop in the mid-stratosphere. The linear cases exhibit warmings which are more shallow and more intense at 30 km than the nonlinear cases.

Lordi, N. J.↗
DOE OSTI2022

Acoustic force spectroscopy reveals subtle differences in cellulose unbinding behavior of carbohydrate-binding modules

Protein adsorption to solid carbohydrate interfaces is critical to many biological processes, particularly in biomass deconstruction. To engineer more-efficient enzymes for biomass deconstruction into sugars, it is necessary to characterize the complex protein–carbohydrate interfacial interactions. A carbohydrate-binding module (CBM) is often associated with microbial surface-tethered cellulosomes or secreted cellulase enzymes to enhance substrate accessibility. However, it is not well known how CBMs recognize, bind, and dissociate from polysaccharides to facilitate efficient cellulolytic activity, due to the lack of mechanistic understanding and a suitable toolkit to study CBM–substrate interactions. Our work outlines a general approach to study the unbinding behavior of CBMs from polysaccharide surfaces using a highly multiplexed single-molecule force spectroscopy assay. Here, we apply acoustic force spectroscopy (AFS) to probe a Clostridium thermocellum cellulosomal scaffoldin protein (CBM3a) and measure its dissociation from nanocellulose surfaces at physiologically relevant, low force loading rates. An automated microfluidic setup and method for uniform deposition of insoluble polysaccharides on the AFS chip surfaces are demonstrated. The rupture forces of wild-type CBM3a, and its Y67A mutant, unbinding from nanocellulose surfaces suggests distinct multimodal CBM binding conformations, with structural mechanisms further explored using molecular dynamics simulations. Applying classical dynamic force spectroscopy theory, the single-molecule unbinding rate at zero force is extrapolated and found to agree with bulk equilibrium unbinding rates estimated independently using quartz crystal microbalance with dissipation monitoring. However, our results also highlight critical limitations of applying classical theory to explain the highly multivalent binding interactions for cellulose–CBM bond rupture forces exceeding 15 pN.

09 BIOMASS FUELS↗
DOE OSTI2018

Quantum Calculations on Plant Cell Wall Component Interactions

In this paper, density functional theory calculations were performed to assess the relative interaction energies of plant cell wall components: cellulose, xylan, lignin and pectin. Monomeric and tetramer linear molecules were allowed to interact in four different configurations for each pair of compounds. The M0 5 -2X exchange-correlation functional which implicitly accounts for short- and mid-range dispersion was compared against MP2 and RI-MP2 to assess the reliability of the former for modeling van der Waals forces between these PCW components. Solvation effects were examined by modeling the interactions in the gas phase, in explicit H 2 O, and in polarized continuum models (PCM) of solvation. PCMs were used to represent water, methanol, and chloroform. The results predict the relative ranges of each type of interaction and when specific configurations will be strongly preferred. Finally, structures and energies are useful as a basis for testing classical force fields and as guidance for coarse-grained models of PCWs.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1993

Life cycles of transient planetary waves

In recent years there has been an increasing effort devoted to understanding the physical and dynamical processes that govern the global-scale circulation of the atmosphere. This effort has been motivated, in part, from: (1) a wealth of new satellite data; (2) an urgent need to assess the potential impact of chlorofluorocarbons on our climate; (3) an inadequate understanding of the interactions between the troposphere and stratosphere and the role that such interactions play in short and long-term climate variability; and (4) the realization that addressing changes in our global climate requires understanding the interactions among various components of the earth system. The research currently being carried out represents an effort to address some of these issues by carrying out studies that combine radiation, ozone, seasonal thermal forcing and dynamics. Satellite and ground-based data that is already available is being used to construct basic states for our analytical and numerical models. Significant accomplishments from 1991-1992 are presented and include the following: ozone-dynamics interaction; (2) periodic local forcing and low frequency variability; and (3) steady forcing and low frequency variability.

Nathan, Terrence↗
DOE OSTI2012

Fundamental difference of subpicosecond laser interaction compared to longer pulses for ultrahigh acceleration

Interaction of picosecond laser pulses above terawatt power with high density plasmas shows a nearly 100% conversion of the laser energy into directed acceleration of the electron cloud by nonlinear (ponderomotive) forces giving the ion cloud accelerations several orders of magnitude higher than comparable nanosecond interaction based on thermal pressure processes.

43 PARTICLE ACCELERATORS↗
DOE OSTI2011

Neutrino physics with dark matter experiments and the signature of new baryonic neutral currents

New neutrino states {nu}{sub b}, sterile under the standard model interactions, can be coupled to baryons via the isoscalar vector currents that are much stronger than the standard model weak interactions. If some fraction of solar neutrinos oscillate into {nu}{sub b} on their way to Earth, the coherently enhanced elastic {nu}{sub b}-nucleus scattering can generate a strong signal in the dark matter detectors. For the interaction strength a few hundred times stronger than the weak force, the elastic {nu}{sub b}-nucleus scattering via new baryonic currents may account for the existing anomalies in the direct detection dark matter experiments at low recoil. We point out that for solar-neutrino energies, the baryon-current-induced inelastic scattering is suppressed, so that the possible enhancement of a new force is not in conflict with signals at dedicated neutrino detectors. We check this explicitly by calculating the {nu}{sub b}-induced deuteron breakup, and the excitation of a 4.4 MeV {gamma} line in {sup 12}C. A stronger-than-weak force coupled to the baryonic current implies the existence of a new Abelian gauge group U(1){sub B} with a relatively light gauge boson.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
NASA NTRS1995

Determination of Quantum Chemistry Based Force Fields for Molecular Dynamics Simulations of Aromatic Polymers

Ab initio quantum chemistry calculations for model molecules can be used to parameterize force fields for molecular dynamics simulations of polymers. Emphasis in our research group is on using quantum chemistry-based force fields for molecular dynamics simulations of organic polymers in the melt and glassy states, but the methodology is applicable to simulations of small molecules, multicomponent systems and solutions. Special attention is paid to deriving reliable descriptions of the non-bonded and electrostatic interactions. Several procedures have been developed for deriving and calibrating these parameters. Our force fields for aromatic polyimide simulations will be described. In this application, the intermolecular interactions are the critical factor in determining many properties of the polymer (including its color).

Jaffe, Richard↗
DOE OSTI2022

Long-Term Aging in Miscible Polymer Nanocomposites

Here we find that the initial, solvent-cast state of nanoparticles (NPs) in a polymer matrix temporally evolves during thermal annealing such that, at steady state, NPs maximize their distance from each other subject to mass balance constraints. The observed timescales for this unexpected structural reorganization, as probed by small-angle X-ray scattering, are temperature-dependent and can be prohibitively large, especially at temperatures around and below 1.2Tg. X-ray photon correlation spectroscopy measurements during reorganization reveal that the collective NP dynamics slow down with annealing at constant temperature; this is accompanied by changes in the low-frequency regime in macroscopic viscoelastic measurements in equilibrated materials. By ruling out other potential sources for these effects (i.e., electrostatic interactions, adsorbed layers), we attribute these results to a long-ranged repulsive force between the NPs caused by fluctuations in the polymer phase, i.e., the "anti-Casimir" effect proposed by Obhukhov and Semenov [Long-range interactions in polymer melts: The anti-Casimir effect. Phys Rev Lett 2005, 95 (3), 038305]. Thus, our results highlight the important role of long-term, slow NP reorganization on the structure and, subsequently, the properties of polymer nanocomposites (PNCs), even in the case of nominally miscible polymer nanoparticle hybrids.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2013

Understanding ion-ion interactions in bulk and aqueous interfaces using molecular simulations

In addition to its scientific significance, the distribution of ions in the bulk and at aqueous interfaces also is very important for practical reasons. A quantitative description of the ionic distribution and how to describe interactions between them in different environments remain a challenge are the subjects of current debate. In this study, we found that interionic potentials of mean force (PMF) and interfacial properties are very sensitive to the ion-ion interaction potential models. Our computed Sr2+-Cl- PMF shows a no contact ion-pair state and a shallow solvent-separated ion-pair state. In addition, we were able to quantitatively capture the experimental x-ray reflectivity results of the aqueous salt interface of Sr2+-Cl- ion-pair system, and predict the reflectivity for Sr2+-Br- and Sr2+-I- systems. In this paper, we provide a detailed physical description of the interfacial structure of these systems.. This work was supported by the U.S. Department of Energy (DOE), Office of Basic Energy Sciences (BES), Division of Chemical Sciences, Geosciences and Biosciences. Pacific Northwest National Laboratory is a multiprogram national laboratory operated for DOE by Battelle.

Dang, Liem X↗