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At least 1,585 records · Page 88

Langmuir turbulence and filament frontogenesis in the oceanic surface boundary layer

Submesoscale currents, small-scale turbulence and surface gravity waves co-exist in the upper ocean and interact in complex ways. To expose the couplings, the frontogenetic life cycle of an idealized cold dense submesoscale filament interacting with upper ocean Langmuir turbulence is investigated in large-eddy simulations (LESs) based on the incompressible wave-averaged equations. The simulations utilize large domains and fine meshes with $6.4\times 10^{9}$ grid points. Case studies are made with surface winds or surface cooling with waves oriented in across-filament (perpendicular) or down-filament (parallel) directions relative to the two-dimensional filament axis. The currents $u$ , $v$ and $w$ are aligned with the across-filament, down-filament and vertical directions, respectively. Frontogenesis is induced by across-filament Lagrangian secondary circulations in the boundary layer, and it is shown to be strongly impacted by surface waves, in particular the propagation direction relative to the filament axis. In a horizontally heterogeneous boundary layer, surface waves induce both mean and fluctuating Stokes-drift vortex forces that modify a linear, hydrostatic turbulent thermal wind (TTW) approximation for momentum. Down-filament winds and waves are found to be especially impactful, they significantly reduce the peak level of frontogenesis by fragmenting the filament into primary and secondary down-welling sites in a broad frontal zone over a width ${\sim}500~\text{m}$ . At peak frontogenesis, opposing down-filament jets $\langle v\rangle$ overlie each other resulting in a vigorous vertical shear layer $\unicode[STIX]{x2202}_{z}\langle v\rangle$ with large vertical momentum flux $\langle v^{\prime }w^{\prime }\rangle$ . Filament arrest is induced by a lateral shear instability that generates horizontal momentum flux $\langle u^{\prime }v^{\prime }\rangle$ at low wavenumbers. The turbulent vertical velocity patterns, indicative of coherent Langmuir cells, change markedly across the horizontal domain with both across-filament and down-filament winds under the action of submesoscale currents.

Mechanics↗

Single-Molecule Tracking Measurements Reveal the Detailed Mechanisms of Molecular Diffusion in Solvent Mixtures under Nanoconfinement

Understanding mass transport mechanisms in nanopores is important for developing advanced materials for chemical separations, chemical sensing, and energy storage. This paper reports a novel imaging platform that is employed for the first time to investigate the detailed diffusion dynamics of single rhodamine B (RhB) dye molecules confined within solution-filled cylindrical anodic aluminum oxide (AAO) nanopores. The imaging platform relies on illumination of horizontally-oriented AAO nanopores in a highly inclined and laminated optical (HILO) light sheet microscopy geometry. The method was used to investigate the translational and orientational dynamics of single rhodamine B (RhB) molecules within horizontally-oriented 5- and 10-nm diameter AAO nanopores filled with water–ethanol mixtures. The established platform enabled the observation of one-dimensional motion along the pore axis involving occasional short- or long-term immobilization at the single-molecule level. Analysis of cumulative squared-displacement distributions revealed fast (5 – 30 µm²/s), intermediate (1 – 5 µm²/s), and slow (< 1 µm²/s) diffusion components. From the effects of mixture composition and pore size on the contributions of these three components, we inferred that the fast, intermediate, and slow components could be assigned to desorption-mediated hopping, crawling, and wiggling motions, respectively. The platform based on the horizontally-oriented AAO nanopores also permitted single-molecule emission polarization measurements that revealed the negligible steric confinement of individual diffusing RhB molecules within the AAO nanopores. The imaging platform based on AAO membranes and HILO microscopy provided a unique means to investigate how solvation-mediated surface interactions and nanoconfinement govern molecular transport in nanoporous environments.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Three-Dimensional Settling Dynamics of Environmental Microplastics

Resolving the three-dimensional settling dynamics of microplastic (MP) particles is essential for developing comprehensive models of MP transport in rivers-both vertically within the water column and laterally across the channel. While previous research has largely examined one-dimensional vertical settling velocities, little is known about the lateral drifting, settling paths, and horizontal velocities of MPs. To address this, we investigated the full three-dimensional settling behavior of environmental MPs collected from rivers and ocean water, as well as from estuarine and ocean sediment. Geometric properties of 127 environmental MPs were quantified by a dynamic particle image analyzer, and their settling trajectories were recorded and reconstructed via a multicamera tracking algorithm. This enabled quantification of a particle's horizontal drift, tortuosity, amplitude and settling pattern, as well as vertical and horizontal velocities. Results showed that spherical MPs settled with minimal lateral displacement, whereas elongated particles, such as rod- and blade-shaped MPs, displayed pronounced lateral movements, reaching up to 65 times their equivalent diameter and averaging more than twice that of spheres. These dynamics suggest that elongated MPs may have a greater probability for wider lateral dispersion in rivers, increasing their likelihood for interactions with riverbanks and channel boundaries compared to more spherical shaped MPs.

54 ENVIRONMENTAL SCIENCES↗

Response of the Atmospheric Boundary Layer to Submesoscale Sea Surface Temperature Fronts

Submesoscale sea surface temperature fronts are ubiquitous throughout much of the global ocean; however, the response of the marine atmospheric boundary layer (MABL) to the ocean submesoscale is not well understood. Here large-eddy simulation is used to explore the time-dependent response of the MABL to idealized submesoscale sea surface temperature fronts, with an emphasis on how the dynamics of the MABL determine the strength and position of gradients in wind speed and air temperature. Results suggest that horizontal mixing only becomes important in response to frontogenesis by horizontally convergent ageostrophic flows, contrary to the common assumption that the MABL response will be strongly dependent on horizontal turbulent mixing. The fronts that develop in the MABL are also associated with large vertical relative vorticity, suggesting the possibility that submesoscale fronts may induce inertial instability in the MABL. Finally, these results provide guidance for high-resolution ocean and atmosphere modeling and for interpreting observations.

58 GEOSCIENCES↗

Mid-latitude ionospheric irregularity spectral density as determined by ground-based GPS receiver networks

In this paper, we present a new technique to experimentally measure the spatial spectrum of ionospheric disturbances in the spatial scale regime of 40 – 200 km. This technique produces a 2-dimensional (2-D) spectrum for each time snapshot over two dense GPS receiver networks (GEONET in Japan and PBO in the Western U.S.). Because this technique created the spectrum from an instantaneous time snapshot, no assumptions are needed about the speed of ionospheric irregularities. We examine spectra from three days: one with an intense geomagnetic storm, one with significant lightning activity, and one quiet day. Radial slices along the 2-D spectra provide 1-dimensional spectra that can be fit to a power law to quantify the steepness of the fall-off in the spatial scale sizes. Continuous data of this type in a stationary location allows monitoring the variability in the 2-D spectrum over the course of a day and comparing between days, as shown here, or even over a year or many years. We find that the spectra are highly variable over the course of a day and between the two selected regions of Japan and the Western U.S. When strong travelling ionospheric disturbances (TIDs) are present, the 2-D spectra provide information about the direction of propagation of the TIDs. We compare the TID propagation direction with horizontal wind directions from the Horizontal Wind Model. Finally, TID direction is correlated with the horizontal wind direction on all days, strongly indicating that the primary source of the TIDs measured by this technique is tropospheric.

79 ASTRONOMY AND ASTROPHYSICS↗

Interseismic Ground Deformation and Fault Slip Rates in the Greater San Francisco Bay Area From Two Decades of Space Geodetic Data

The detailed spatial variations of strain accumulation and creep on major faults in the northern San Francisco Bay Area (North Bay), which are important for seismic potential and evaluation of natural hazards, remain poorly understood. We combine interferometric synthetic aperture radar data from the ERS-1/2 and Envisat satellites between 1992 and 2010 with continuous and campaign GPS data to obtain a high spatial and temporal coverage of ground deformation of the North Bay. The SAR data from both ascending and descending orbits are combined to separate horizontal and vertical components of the deformation. We jointly invert the horizontal component of the mean velocities derived from these data to infer the deep strike-slip rates on major locked faults. We use the estimated deep rates to simulate the long-wavelength deformation due to interseismic elastic strain accumulation along these locked faults. After removing the long-wavelength signal from the InSAR horizontal mean velocity field, we estimate fault-parallel surface creep rates of up to 2 mm/year along the central section of the Rodgers Creek fault and surface creep rates ranging between 2 and 4 mm/year along the Concord fault. No surface creep is geodetically resolved along the West Napa and Green Valley fault zones. We identified characteristically repeating earthquakes on the Rodgers Creek fault, the West Napa fault, the Green Valley fault, and the Concord fault. Finally, nontectonic deformation in the Geysers geothermal field and in Late Cenozoic basins (Rohnert Park and Sonoma basins) are also observed, likely due to hydrological and sediment-compaction processes, respectively.

58 GEOSCIENCES↗

An Assessment of Global Positioning System Velocity Uncertainty in California

We analyze data from 580 continuous global positioning system (GPS) stations in California to quantify differences in published velocity estimates from five analysis centers. Horizontal and vertical rates for individual stations can differ up to 5 mm/yr, with systematic differences in some areas comparable to deformation rates. Published velocity uncertainties vary between analysis centers and are systematically underreported in the horizontal relative to empirical uncertainties calculated from the scatter of analysis center velocities. In the vertical, published velocity uncertainties are both over and underreported and vary more widely between centers. An interpolated ensemble vertical velocity field shows high-subsidence regions in the Central Valley and Salton Trough have the largest empirical uncertainties, while station density has a modest impact on uncertainties. Applications that rely on subcentimeter GPS accuracy should consider the possibility that formal errors published with velocity rate estimates understate true velocity uncertainties in both the horizontal and vertical.

54 ENVIRONMENTAL SCIENCES↗

Numerical and Analytical Modeling of Flow Partitioning in Partially Saturated Fracture Networks

Infiltration processes in fractured-porous media remain a crucial, yet not very well understood component of recharge and vulnerability assessment. Under partially-saturated conditions flows in fractures, percolating fracture networks, and fault zones contribute to the fastest spectrum of infiltration velocities via preferential pathways. Specifically, the partitioning dynamics at fracture intersections determine the magnitude of flow fragmentation into vertical and horizontal components and hence the bulk flow velocity and dispersion of fracture networks. In this work, we derive an approximate analytical solution for the partitioning process and validate it using smoothed particle hydrodynamics simulations. The developed transfer function is conceptually based on simulation results and laboratory experiments carried out in previous works. It allows to efficiently simulate flow through fracture networks with simple cubic structure and arbitrary number of fractures and aperture sizes via linear response theory and convolution of a given input signal. We derive a non-dimensional bulk flow velocity ($\widetilde{v}$) and dispersion coefficient ($\widetilde{D}$) to characterize fracture networks in terms of dimensionless horizontal and vertical time scales $\tau_m$ and $\tau_0$. The dispersion coefficient is shown to strongly depend on the horizontal time scale and converges towards a constant value of $0.08$ within reasonable fluid and geometrical parameter ranges, while the non-dimensional velocity exhibits a characteristic $\widetilde{v} \sim \tau_m^{-1/2}$ scaling. Given that hydraulic information is often only available at limited places within (fractured-porous) aquifer system, such as boreholes or springs, our study intends to provide a rudimentary analytical concept to potentially reconstruct internal fracture network geometries from external boundary information, e.g., the dispersive properties of discharge (groundwater level fluctuations).

42 ENGINEERING↗

Shallow Aseismic Slip in the Delaware Basin Determined by Sentinel-1 InSAR

The Delaware Basin, Texas is currently a hot-spot of induced seismicity and ground deformation due to fluid extraction and injection associated with horizontal drilling techniques; however, the driving mechanism behind the seismicity and deformation remains under debate. Here, using vertical and east-west horizontal surface deformation measurements derived from Sentinel-1 interferometric synthetic aperture radar (InSAR), we show that the subsurface responds differently to oil and gas activity in the northern and southeastern portions of the basin. In the north, where there is little seismicity, deformation patterns display long-wavelengths and equidimensional patterns. In contrast, the southeast region hosts most of the seismicity and displays spatial deformation patterns with narrow linear features that strike parallel to the maximum principal horizontal stress and to trends in seismicity, suggesting movement along normal faults. We model a linear deformation feature using edge dislocations and show that the InSAR observations can be reproduced by slip on normal faults contained within the Delaware Mountain Group (DMG), the formation that hosts local wastewater injection and the majority of earthquakes. Our model consists of three parallel, high-angle normal faults, with two dipping toward one another in a graben structure. Slip magnitudes reach up to 25 cm and are spatially correlated with injection wells. Measured seismicity can only explain ~2% of the fault motion predicted by our fault model, suggesting that slip leading to the deformation is predominantly aseismic. We conclude that seismic and aseismic fault motion in the southeastern Delaware Basin is likely driven by wastewater injection near critically-stressed normal faults within the DMG.

58 GEOSCIENCES↗

Performance of Cloud 3D Solvers in Ice Cloud Shortwave Radiation Closure Over the Equatorial Western Pacific Ocean

Abstract For retrieving cloud optical properties from satellite images or computing these properties from climate model output, computationally efficient treatments of cloud horizontal inhomogeneity include the Monte Carlo Independent Column Approximation (McICA) and the Tripleclouds method. Computationally efficient treatment of cloud horizontal radiation exchanges includes the SPeedy Algorithm for Radiative TrAnsfer through CloUd Sides (SPARTACUS). As a test to derive properties from satellite images, we collocate Moderate Resolution Imaging Spectroradiometer (MODIS) cloud retrievals with near‐nadir Cloud and the Earth's Radiant Energy System (CERES) footprints in July 2008 over an equatorial western Pacific Ocean region to compare the performance of the McICA, Tripleclouds, and SPARTACUS solvers to the conventional plane‐parallel homogeneous (PPH) treatment. PPH overestimates cloud albedo, and the three solvers effectively reduce overestimation with root mean square error of shortwave upwelling irradiance decreasing between 15.72 and 18.53 W m −2 , or about 22%–25%. Although cloud top variability does not get fed into the simulations, all three solvers also reduce the effect of cloud top variability on cloud albedo. Entrapment (energy reflected downward from clouds) and horizontal radiation transfer have opposite effects on the SPARTACUS cloud albedo simulation. The net effect depends on the cloud vertical extent, the unawareness of which limits the performance of the SPARTACUS solver.

54 ENVIRONMENTAL SCIENCES↗

Resolving Away Stratocumulus Biases in Modern Global Climate Models

Abstract Increased horizontal and vertical resolution in global atmospheric models can reduce a significant amount of the biases associated with subtropical marine stratocumulus. The sensitivity of offshore and coastal marine stratocumulus to different horizontal and vertical resolutions has been investigated by using Energy Exascale Earth System Model (E3SM) coupled with the novel Framework for Improvement by Vertical Enhancement which has been demonstrated as a viable tool to improve the representation of marine stratocumulus while saving computational cost. Our study shows that high vertical resolution is the key to improve marine stratocumulus simulations in E3SM. Concurrent horizontal and vertical resolution increases are needed for substantial overall reduction of stubborn marine stratocumulus biases over the coastal region but not necessarily in the offshore area.

54 ENVIRONMENTAL SCIENCES↗

Climate, Variability, and Climate Sensitivity of “Middle Atmosphere” Chemistry Configurations of the Community Earth System Model Version 2, Whole Atmosphere Community Climate Model Version 6 (CESM2(WACCM6))

Abstract Simulating whole atmosphere dynamics, chemistry, and physics is computationally expensive. It can require high vertical resolution throughout the middle and upper atmosphere, as well as a comprehensive chemistry and aerosol scheme coupled to radiation physics. An unintentional outcome of the development of one of the most sophisticated and hence computationally expensive model configurations is that it often excludes a broad community of users with limited computational resources. Here, we analyze two configurations of the Community Earth System Model Version 2, Whole Atmosphere Community Climate Model Version 6 (CESM2(WACCM6)) with simplified “middle atmosphere” chemistry at nominal 1 and 2° horizontal resolutions. Using observations, a reanalysis, and direct model comparisons, we find that these configurations generally reproduce the climate, variability, and climate sensitivity of the 1° nominal horizontal resolution configuration with comprehensive chemistry. While the background stratospheric aerosol optical depth is elevated in the middle atmosphere configurations as compared to the comprehensive chemistry configuration, it is comparable among all configurations during volcanic eruptions. For any purposes other than those needing an accurate representation of tropospheric organic chemistry and secondary organic aerosols, these simplified chemistry configurations deliver reliable simulations of the whole atmosphere that require 35% and 86% fewer computational resources at nominal 1 and 2° horizontal resolution, respectively.

54 ENVIRONMENTAL SCIENCES↗

Evaluation of Autoconversion Representation in E3SMv2 Using an Ensemble of Large-Eddy Simulations of Low-Level Warm Clouds

In numerical atmospheric models that treat cloud and rain droplet populations as separate condensate categories, precipitation initiation in warm clouds is often represented by an autoconversion rate (Au), which is the rate of formation of new rain droplets through the collisions of cloud droplets. Being a function of the cloud droplet size distribution (DSD), the local Au is commonly parameterized as a function of DSD moments: cloud droplet number (n c ) and mass (q c ) concentrations. When applied in a large-scale model, the grid-mean Au must also include a correction, or enhancement factor, to account for the horizontal variability of the cloud properties across the model grid. In this study, we evaluate the Au representation in the Energy Exascale Earth System Model version 2 (E3SMv2) climate model using large-eddy simulations (LES), which explicitly resolve cloud droplet spectra, and therefore the local Au, as well as its spatial variability. The analysis of an ensemble of warm low-level cloud cases shows that the E3SMv2 formulation represents the Au reasonably well compared to the horizontally averaged explicitly computed rate from LES. The agreement, however, comes from a combination of an underestimated E3SM-tuned local Au rate and an overestimated subgrid cloud variability enhancement factor. The latter bias is traced to neglecting the horizontal variability of n c and its co-variability with q c in parameterizing the grid-mean Au.

54 ENVIRONMENTAL SCIENCES↗

Numerical Mixing Suppresses Submesoscale Baroclinic Instabilities Over Sloping Bathymetry

Abstract The impacts of spurious numerical salinity mixing on the larger‐scale flow and tracer fields are characterized using idealized simulations. The idealized model is motivated by realistic simulations of the Texas‐Louisiana shelf and features oscillatory near‐inertial wind forcing. can exceed the physical mixing from the turbulence closure in frontal zones and within the mixed layer. This suggests that simulated mixing processes in frontal zones are driven largely by . Near‐inertial alongshore wind stress amplitude is varied to identify a base case that maximizes the ratio of to in simulations with no prescribed horizontal mixing. We then test the sensitivity of the base case with three tracer advection schemes (MPDATA, U3HC4, and HSIMT) and conduct ensemble runs with perturbed bathymetry. Instability growth is evaluated using the volume‐integrated eddy kinetic energy and available potential energy . While all schemes have similar total mixing, the HSIMT simulations have over double the volume‐integrated and 20% less relative to other schemes, which suppresses the release of and reduces the by roughly 25%. This results in reduced isohaline variability and steeper isopycnals, evidence that enhanced suppresses instability growth. Differences in and between the MPDATA and U3HC4 simulations are marginal. However, the U3HC4 simulations have 25% more . Experiments with variable horizontal viscosity and diffusivity coefficients show that small amounts of prescribed horizontal mixing improve the representation of the ocean state for all advection schemes by reducing the and increasing the .

54 ENVIRONMENTAL SCIENCES↗

Ancestral genome reconstruction identifies the evolutionary basis for trait acquisition in polyphosphate accumulating bacteria

The evolution of complex traits is hypothesized to occur incrementally. Identifying the transitions that lead to extant complex traits may provide a better understanding of the genetic nature of the observed phenotype. A keystone functional group in wastewater treatment processes are polyphosphate accumulating organisms (PAOs), however the evolution of the PAO phenotype has yet to be explicitly investigated and the specific metabolic traits that discriminate non-PAO from PAO are currently unknown. Here we perform the first comprehensive investigation on the evolution of the PAO phenotype using the model uncultured organism Candidatus Accumulibacter phosphatis (Accumulibacter) through ancestral genome reconstruction, identification of horizontal gene transfer, and a kinetic/stoichiometric characterization of Accumulibacter Clade IIA. The analysis of Accumulibacter’s last common ancestor identified 135 laterally derived genes, including genes involved in glycogen, polyhydroxyalkanoate, pyruvate and NADH/NADPH metabolisms, as well as inorganic ion transport and regulatory mechanisms. In contrast, pathways such as the TCA cycle and polyphosphate metabolism displayed minimal horizontal gene transfer. We show that the transition from non-PAO to PAO coincided with horizontal gene transfer within Accumulibacter’s core metabolism; likely alleviating key kinetic and stoichiometric bottlenecks, such as anaerobically linking glycogen degradation to polyhydroxyalkanoate synthesis. These results demonstrate the utility of investigating the derived genome of a lineage to identify key transitions leading to an extant complex phenotype.

59 BASIC BIOLOGICAL SCIENCES↗

Prediction of {sup 2}D Rydberg energy levels of {sup 6}Li and {sup 7}Li based on very accurate quantum mechanical calculations performed with explicitly correlated Gaussian functions

Very accurate variational nonrelativistic finite-nuclear-mass calculations employing all-electron explicitly correlated Gaussian basis functions are carried out for six Rydberg {sup 2}D states (1s{sup 2}nd, n= 6, Horizontal-Ellipsis , 11) of the {sup 7}Li and {sup 6}Li isotopes. The exponential parameters of the Gaussian functions are optimized using the variational method with the aid of the analytical energy gradient determined with respect to these parameters. The experimental results for the lower states (n= 3, Horizontal-Ellipsis , 6) and the calculated results for the higher states (n= 7, Horizontal-Ellipsis , 11) fitted with quantum-defect-like formulas are used to predict the energies of {sup 2}D 1s{sup 2}nd states for {sup 7}Li and {sup 6}Li with n up to 30.

74 ATOMIC AND MOLECULAR PHYSICS↗

Optical design of the short pulse x-ray imaging and microscopy time-angle correlated diffraction beamline at the Advanced Photon Source

The short pulse x-ray imaging and microscopy beamline is one of the two x-ray beamlines that will take full advantage of the short pulse x-ray source in the Advanced Photon Source (APS) upgrade. A horizontally diffracting double crystal monochromator which includes a sagittally focusing second crystal will collect most of the photons generated when the chirped electron beam traverses the undulator. A Kirkpatrick-Baez mirror system after the monochromator will deliver to the sample a beam which has an approximately linear correlation between time and vertical beam angle. The correlation at the sample position has a slope of 0.052 ps/{mu}rad extending over an angular range of 800 {mu}rad for a cavity deflection voltage of 2 MV. The expected time resolution of the whole system is 2.6 ps. The total flux expected at the sample position at 10 keV with a 0.9 eV energy resolution is 5.7 Multiplication-Sign 10{sup 12} photons/s at a spot having horizontal and vertical full width at half maximum of 33 {mu}m horizontal by 14 {mu}m vertical. This new beamline will enable novel time-dispersed diffraction experiments on small samples using the full repetition rate of the APS.

43 PARTICLE ACCELERATORS↗

Measurements of aperture and beam lifetime using movable beam scrapers in Indus-2 electron storage ring

In this paper, the measurements of vertical and horizontal aperture which are available for stable beam motion in Indus-2 at beam energy 2.5 GeV using movable beam scrapers are presented. These beam scrapers are installed in one of the long straight sections in the ring. With the movement of beam scrapers towards the beam centre, the beam lifetime is measured. The beam lifetime data obtained from the movement of vertical and horizontal beam scrapers are analyzed. The contribution of beam loss due to beam-gas scattering (vacuum lifetime) and electron-electron scattering within a beam bunch (Touschek lifetime) is separated from the measured beam lifetime at different positions of the beam scrapers. Vertical and horizontal beam sizes at scrapers location are estimated from the scraper movement towards the beam centre in quantum lifetime limit and their values closely agree with measured value obtained using X-ray diagnostic beamline.

43 PARTICLE ACCELERATORS↗