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At least 1,585 records · Page 88

Evaluation of compositional nonrandomness in proteins

The finite sampling component of Q, a measure of nonrandomness in the amino acid composition of proteins, is quantitatively estimated by using the natural abundances of amino acids rather than the genetic code table frequencies, and the revised value of Q implies that the value of Q(c), a measure of selective effects above and beyond those imposed by the average natural abundance of the amino acids, should be 9.7 rather than its previous value of 24.3. Individual Q(c) values are given for 81 protein families. The standard deviation of the population of Q(c) values is 12.5 but the Q(c) value differs significantly from the value of zero expected were the natural abundances of the amino acids the only selective constraint. The small value of Q(c) indicates that quantitatively minimal adjustments away from the average protein composition are necessary to maintain many different biological functions.

Holmquist, R.↗

Gaseous NH4Cl revisited - A computational investigation of the potential surface and properties

An investigation of the potential surface and properties of the ground state of gaseous NH4Cl is presented. The calculations, which utilize a good basis set and include investigation of the valence correlation effects, result in a description of gaseous NH4Cl as a weakly bound complex with NH3 and HCl structures essentially equivalent to those of the isolated fragments. The charge distributions within the fragments are modifed in the complex, however, and there is a small amount of charge transfer. The results are in reasonable agreement with estimate of D sub 0, super 0 from high temperature mass spectroscopic investigations and vibrational frequencies from matrix experiments. The equilibrium constant for the reversible reaction NH4Cl yields NH3 + HCl indicates that the homogeneous formation of NH4Cl does not represent a significant chemical sink for HCl in the upper atmosphere

Raffenetti, R. C.↗

Short period tidal variations of earth rotation

It is explained that the tidal deformation of the earth's polar moment of inertia by the moon and sun cause periodic variations in rotation. The short period oscillations give rise to a meter-sized, diurnal signature in the lunar laser ranging data obtained at McDonald Observatory. A solution is given for the scale parameter k/C at fortnightly and monthly tidal frequencies. The results are compared with those obtained by other investigators and with a theoretical estimate which includes the effect of oceans and a decoupled fluid core.

Yoder, C. F.↗

Energy yields for hydrogen cyanide and formaldehyde syntheses - The HCN and amino acid concentrations in the primitive ocean

Simulated prebiotic atmospheres containing either CH4, CO, or CO2, in addition to N2, H2O, and variable amounts of H2, were subjected to the spark from a high-frequency Tesla coil, and the energy yields for the syntheses of HCN and H2CO were estimated from periodic (every two days) measurements of the compound concentrations. The mixtures with CH4 were found to yield the highest amounts of HCN, whereas the CO mixtures produced the highest yields of H2CO. These results model atmospheric corona discharges. From the yearly energy yields calculated and the corona discharge available on the earth, the yearly production rate of HCN was estimated; using data on the HCN production rates and the experimental rates of decomposition of amino acids through the submarine vents, the steady state amino acid production rate in the primitive ocean was calculated to be about 10 nmoles/sq cm per year.

Stribling, Roscoe↗

Laboratory measurements for the astrophysical identification of MgH

A tunable far-infrared spectrometer has been used to observe the pure rotational spectrum of MgH in a DC discharge of H2 with magnesium. The frequencies of the hyperfine components of the N = 1 - 0 transition are predicted to an estimated accuracy of + or - 350 kHz, which should be sufficient for the astrophysical identification of this species.

Zink, L. R.↗

A very high speed lossless compression/decompression chip set

A chip is described that will perform lossless compression and decompression using the Rice Algorithm. The chip set is designed to compress and decompress source data in real time for many applications. The encoder is designed to code at 20 M samples/second at MIL specifications. That corresponds to 280 Mbits/second at maximum quantization or approximately 500 Mbits/second under nominal conditions. The decoder is designed to decode at 10 M samples/second at industrial specifications. A wide range of quantization levels is allowed (4...14 bits) and both nearest neighbor prediction and external prediction are supported. When the pre and post processors are bypassed, the chip set performs high speed entropy coding and decoding. This frees the chip set from being tied to one modeling technique or specific application. Both the encoder and decoder are being fabricated in a 1.0 micron CMOS process that has been tested to survive 1 megarad of total radiation dosage. The CMOS chips are small, only 5 mm on a side, and both are estimated to consume less than 1/4 of a Watt of power while operating at maximum frequency.

Venbrux, Jack↗

Active vibration control with model correction on a flexible laboratory grid structure

This paper presents experimental and computational comparisons of three active damping control laws applied to a complex laboratory structure. Two reduced structural models were used with one model being corrected on the basis of measured mode shapes and frequencies. Three control laws were investigated, a time-invariant linear quadratic regulator with state estimation and two direct rate feedback control laws. Experimental results for all designs were obtained with digital implementation. It was found that model correction improved the agreement between analytical and experimental results. The best agreement was obtained with the simplest direct rate feedback control.

Schamel, George C., II↗

Ion-cyclotron waves at Jupiter - Possibility of detection by Ulysses

Recent thermal plasma data and a computer code by Horne (1989) are employed to evaluate the linear-path-integrated gain of waves propagating through the Io to predict the Jovian plasma-wave environment. Estimates of the nonlinear saturation amplitudes are utilized with the thermal plasma data from two frequency bands to study the convective growth of the ion-cyclotron (IC) waves. Strong cyclotron resonant damping is theorized to prevent wave propagation to the lower latitudes, and the thermal plasma and cyclotron resonant energetic ions are expected to further confine the IC waves. L-mode waves below the O(+) gyrofrequency in the equatorial region of the torus are shown to inhabit an unstable region. The IC waves probably achieve nonlinear amplitudes regardless of plasma properties due to the rapid amplification in this region. It is suggested that the Ulysses data complicate the identification of the waves because the magnetometer is not adequately sensitive and because of the low frequency of the plasma-wave detector.

Mei, YI↗

Velocity distributions among colliding asteroids

The probability distribution for impact velocities between two given asteroids is wide, non-Gaussian, and often contains spikes according to our new method of analysis in which each possible orbital geometry for collision is weighted according to its probability. An average value would give a good representation only if the distribution were smooth and narrow. Therefore, the complete velocity distribution we obtain for various asteroid populations differs significantly from published histograms of average velocities. For all pairs among the 682 asteroids in the main-belt with D greater than 50 km, we find that our computed velocity distribution is much wider than previously computed histograms of average velocities. In this case, the most probable impact velocity is approximately 4.4 km/sec, compared with the mean impact velocity of 5.3 km/sec. For cases of a single asteroid (e.g., Gaspra or Ida) relative to an impacting population, the distribution we find yields lower velocities than previously reported by others. The width of these velocity distributions implies that mean impact velocities must be used with caution when calculating asteroid collisional lifetimes or crater-size distributions. Since the most probable impact velocities are lower than the mean, disruption events may occur less frequently than previously estimated. However, this disruption rate may be balanced somewhat by an apparent increase in the frequency of high-velocity impacts between asteroids. These results have implications for issues such as asteroidal disruption rates, the amount/type of impact ejecta available for meteoritical delivery to the Earth, and the geology and evolution of specific asteroids like Gaspra.

Bottke, William F., Jr.↗

Validation of Ocean Color Satellite Data Products in Under Sampled Marine Areas

The planktonic marine cyanobacterium, Trichodesmium sp., is broadly distributed throughout the oligotrophic marine tropical and sub-tropical oceans. Trichodesmium, which typically occurs in macroscopic bundles or colonies, is noteworthy for its ability to form large surface aggregations and to fix dinitrogen gas. The latter is important because primary production supported by N2 fixation can result in a net export of carbon from the surface waters to deep ocean and may therefore play a significant role in the global carbon cycle. However, information on the distribution and density of Trichodesmium from shipboard measurements through the oligotrophic oceans is very sparse. Such estimates are required to quantitatively estimate total global rates of N2 fixation. As a result current global rate estimates are highly uncertain. Thus in order to understand the broader biogeochemical importance of Trichodesmium and N2 fixation in the oceans, we need better methods to estimate the global temporal and spatial variability of this organism. One approach that holds great promise is satellite remote sensing. Satellite ocean color sensors are ideal instruments for estimating global phytoplankton biomass, especially that due to episodic blooms, because they provide relatively high frequency synoptic information over large areas. Trichodesmium has a combination of specific ultrastructural and biochemical features that lend themselves to identification of this organism by remote sensing. Specifically, these features are high backscatter due to the presence of gas vesicles, and absorption and fluorescence of phycoerythrin. The resulting optical signature is relatively unique and should be detectable with satellite ocean color sensors such as the Sea-Viewing Wide Field-of-view Sensor (SeaWiFS).

Subramaniam, Ajit↗

The G2(B3LYP/MP2/CC) Approach: A Modification of the G2(MP2) Approach and a Comparison with B3LYP Results

The quadratic configuration interaction calculation in the G2(MP2) approach is replaced by a coupled-cluster singles and doubles calculation including a perturbational estimate of the triples excitations. In addition, the SCF and MP2 geometry optimizations and SCF frequency calculation in the G2(MP2) approach are replaced by a B3LYP geometry optimization and frequency calculation in the proposed G2(B3LYP/MP2/CC) approach. This simplification does not affect the average absolute deviation from experiment, but decreases the maximum error compared with the G2(MP2) approach. The G2(B3LYP/MP2/CC) results are compared with those obtained using the B3LYP approach, and the G2(B3LYP/MP2/CC) model is found to be more reliable, even if the B3LYP calculations are performed using a large basis set.

Bauschlicher, Charles W., Jr.↗

High-Frequency Quasi-Periodic Oscillations in the Black Hole X-Ray Transient XTE J1650-500

We report the detection of high-frequency variability in the black hole X-ray transient XTE 51650-500. A quasi-periodic oscillation (QPO) was found at 250 Hz during a transition from the hard to the soft state. We also detected less coherent variability around 50 Hz that disappeared when the 250 Hz QPO showed up. There are indications that when the energy spectrum hardened the QPO frequency increased from approx. 110 to approx. 270 Hz, although the observed frequencies are also consistent with being 1 : 2 : 3 harmonics of each other. Interpreting the 250 Hz as the orbital frequency at the innermost stable orbit around a Schwarzschild black hole leads to a mass estimate of 8.2 solar mass. The spectral results by Miller et al., which suggest considerable black hole spin, would imply a higher mass.

Holman, Jeroen↗

The Tropical Convective Spectrum: Archetypal Vertical Structures - Part 1

A taxonomy of tropical convective and stratiform vertical structures is constructed through cluster analysis of 3 yr of Tropical Rainfall Measuring Mission (TRMM) "warm-season" (surface temperature greater than 10 C) precipitation radar (PR) vertical profiles, their surface rainfall, and associated radar-based classifiers (convective/ stratiform and brightband existence). Twenty-five archetypal profile types are identified, including nine convective types, eight stratiform types, two mixed types, and six anvil/fragment types (nonprecipitating anvils and sheared deep convective profiles). These profile types are then hierarchically clustered into 10 similar families, which can be further combined, providing an objective and physical reduction of the highly multivariate PR data space that retains vertical structure information. The taxonomy allows for description of any storm or local convective spectrum by the profile types or families. The analysis provides a quasi-independent corroboration of the TRMM 2A23 convective/ stratiform classification. The global frequency of occurrence and contribution to rainfall for the profile types are presented, demonstrating primary rainfall contribution by midlevel glaciated convection (27%) and similar depth decaying/stratiform stages (28%-31%). Profiles of these types exhibit similar 37- and 85-GHz passive microwave brightness temperatures but differ greatly in their frequency of occurrence and mean rain rates, underscoring the importance to passive microwave rain retrieval of convective/stratiform discrimination by other means, such as polarization or texture techniques, or incorporation of lightning observations. Close correspondence is found between deep convective profile frequency and annualized lightning production, and pixel-level lightning occurrence likelihood directly tracks the estimated mean ice water path within profile types.

Precipitation radar↗

Space Radiation Induced Cytogenetic Damage in the Blood Lymphocytes of Astronauts

Cytogenetic analysis of astronauts blood lymphocytes provides a direct in vivo measurement of space radiation damage, which takes into account individual radiosensitivity and considers the influence of microgravity and other stress conditions. We present our latest analyses of chromosome damage in astronauts blood lymphocytes assessed by fluorescence in situ hybridization (FISH) chromosome painting and collected at various times beginning directly after return from space to several years after flight. Dose was derived from frequencies of chromosome exchanges using preflight calibration curves, and the Relative Biological Effect (RBE) was estimated by comparison with individually measured physically absorbed doses. Values for average RBE were compared to the average quality factor (Q), from direct measurements of the lineal energy spectra using a tissue-equivalent proportional counter (TEPC) and radiation transport codes. Results prove that cytogenetic biodosimetry analyses on blood collected within a week or two of return from space provides a reliable estimate of equivalent radiation dose and risk after protracted exposure to space radiation of a few months or more. However, data collected several months or years after flight suggests that the yield of chromosome translocations may decline with time after the mission, indicating that retrospective doses may be more difficult to estimate. In addition, limited data on multiple flights show a lack of correlation between time in space and translocation yields. Data from one crewmember, who has participated in two separate long-duration space missions and has been followed up for over 10 years, provide limited information on the effect of repeat flights and show a possible adaptive response to space radiation exposure.

George, K.↗

Iterative-Transform Phase Retrieval Using Adaptive Diversity

A phase-diverse iterative-transform phase-retrieval algorithm enables high spatial-frequency, high-dynamic-range, image-based wavefront sensing. [The terms phase-diverse, phase retrieval, image-based, and wavefront sensing are defined in the first of the two immediately preceding articles, Broadband Phase Retrieval for Image-Based Wavefront Sensing (GSC-14899-1).] As described below, no prior phase-retrieval algorithm has offered both high dynamic range and the capability to recover high spatial-frequency components. Each of the previously developed image-based phase-retrieval techniques can be classified into one of two categories: iterative transform or parametric. Among the modifications of the original iterative-transform approach has been the introduction of a defocus diversity function (also defined in the cited companion article). Modifications of the original parametric approach have included minimizing alternative objective functions as well as implementing a variety of nonlinear optimization methods. The iterative-transform approach offers the advantage of ability to recover low, middle, and high spatial frequencies, but has disadvantage of having a limited dynamic range to one wavelength or less. In contrast, parametric phase retrieval offers the advantage of high dynamic range, but is poorly suited for recovering higher spatial frequency aberrations. The present phase-diverse iterative transform phase-retrieval algorithm offers both the high-spatial-frequency capability of the iterative-transform approach and the high dynamic range of parametric phase-recovery techniques. In implementation, this is a focus-diverse iterative-transform phaseretrieval algorithm that incorporates an adaptive diversity function, which makes it possible to avoid phase unwrapping while preserving high-spatial-frequency recovery. The algorithm includes an inner and an outer loop (see figure). An initial estimate of phase is used to start the algorithm on the inner loop, wherein multiple intensity images are processed, each using a different defocus value. The processing is done by an iterative-transform method, yielding individual phase estimates corresponding to each image of the defocus-diversity data set. These individual phase estimates are combined in a weighted average to form a new phase estimate, which serves as the initial phase estimate for either the next iteration of the iterative-transform method or, if the maximum number of iterations has been reached, for the next several steps, which constitute the outerloop portion of the algorithm. The details of the next several steps must be omitted here for the sake of brevity. The overall effect of these steps is to adaptively update the diversity defocus values according to recovery of global defocus in the phase estimate. Aberration recovery varies with differing amounts as the amount of diversity defocus is updated in each image; thus, feedback is incorporated into the recovery process. This process is iterated until the global defocus error is driven to zero during the recovery process. The amplitude of aberration may far exceed one wavelength after completion of the inner-loop portion of the algorithm, and the classical iterative transform method does not, by itself, enable recovery of multi-wavelength aberrations. Hence, in the absence of a means of off-loading the multi-wavelength portion of the aberration, the algorithm would produce a wrapped phase map. However, a special aberration-fitting procedure can be applied to the wrapped phase data to transfer at least some portion of the multi-wavelength aberration to the diversity function, wherein the data are treated as known phase values. In this way, a multiwavelength aberration can be recovered incrementally by successively applying the aberration-fitting procedure to intermediate wrapped phase maps. During recovery, as more of the aberration is transferred to the diversity function following successive iterations around the ter loop, the estimated phase ceases to wrap in places where the aberration values become incorporated as part of the diversity function. As a result, as the aberration content is transferred to the diversity function, the phase estimate resembles that of a reference flat.

Dean, Bruce H.↗

Integrating Inland and Coastal Water Quality Data for Actionable Knowledge

Water quality measures for inland and coastal waters are available as discrete samples from professional and volunteer water quality monitoring programs and higher-frequency, near-continuous data from automated in situ sensors. Water quality parameters also are estimated from model outputs and remote sensing. The integration of these data, via data assimilation, can result in a more holistic characterization of these highly dynamic ecosystems, and consequently improve water resource management. It is becoming common to see combinations of these data applied to answer relevant scientific questions. Yet, methods for scaling water quality data across regions and beyond, to provide actionable knowledge for stakeholders, have emerged only recently, particularly with the availability of satellite data now providing global coverage at high spatial resolution. In this paper, data sources and existing data integration frameworks are reviewed to give an overview of the present status and identify the gaps in existing frameworks. We propose an integration framework to provide information to user communities through the the Group on Earth Observations (GEO) AquaWatch Initiative. This aims to develop and build the global capacity and utility of water quality data, products, and information to support equitable and inclusive access for water resource management, policy and decision making.

Ghada Y.H. El Serafy↗

Single-Band Absolute Astrometry

The ionospheric contribution affects path delay. When simultaneous dual-band observations are used for absolute astrometry, the residual contribution of the ionosphere is at a level of several picoseconds. But there are two cases when we need to process single band group delays: a) some observations provided usable data only for one band; b) an entire experiment used only one band. I have developed a novel approach to utilize GNSS TEC maps to get the best solutions for these two cases and provide realistic estimates of residual errors. Applications of this technology is discussed. In particular, the impact of residual ionospheric path delays at K-band on estimates of source positions is quantitatively evaluated and conclusions about advantages and disadvantages of high frequency absolute astrometry are made.

Leonid Petrov↗

A framework for feasibility-level validation of high-resolution wave hindcast models

The value of long-term wave hindcasts for investigating wave climates, wave energy resources, and extreme wave conditions has motivated research developing, calibrating and validating wave hindcast models. Past hindcast model validation studies examined the accuracy in modeling bulk wave parameters of overall sea states without considering the dependency of the model's skill within different sea states. In the present study, a framework for wave hindcast model validation is developed by examining the model accuracy for the most frequently occurring sea states, sea states contributing the most energy to total wave power, sea states associated with hurricane events, and those with the largest model error. Here, validations using bulk wave parameters and frequency-directional spectra at these key sea states and extreme wave conditions based on univariate and bivariate-contour methods provide insights to improve model accuracy, identifying the model's strong and weak points, and pathways for improvement, e.g., modeling wave-current interactions and adjusting wind data. This study adds to a growing body of research demonstrating that a carefully calibrated and verified spectral wave hindcast model can be used to estimate key wave energy parameters over a wide range of wave energy climates, as well as their spatial, temporal, frequency, directional, and probabilistic distributions.

54 ENVIRONMENTAL SCIENCES↗