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At least 1,585 records · Page 88

Engineered microbial biofuel production and recovery under supercritical carbon dioxide

Culture contamination, end-product toxicity, and energy efficient product recovery are long-standing bioprocess challenges. To solve these problems, we propose a high-pressure fermentation strategy, coupled with in situ extraction using the abundant and renewable solvent supercritical carbon dioxide (scCO 2 ), which is also known for its broad microbial lethality. Towards this goal, we report the domestication and engineering of a scCO 2 -tolerant strain of Bacillus megaterium, previously isolated from formation waters from the McElmo Dome CO 2 field, to produce branched alcohols that have potential use as biofuels. After establishing induced-expression under scCO 2 , isobutanol production from 2-ketoisovalerate is observed with greater than 40% yield with co-produced isopentanol. Finally, we present a process model to compare the energy required for our process to other in situ extraction methods, such as gas stripping, finding scCO 2 extraction to be potentially competitive, if not superior.

09 BIOMASS FUELS↗

Revealing low-temperature plasma efficacy through a dose-rate assessment by DNA damage detection combined with machine learning models

Low-temperature plasmas have quickly emerged as alternative and unconventional types of radiation that offer great promise for various clinical modalities. As with other types of radiation, the therapeutic efficacy and safety of low-temperature plasmas are ubiquitous concerns, and assessing their dose rates is crucial in clinical settings. Unfortunately, assessing the dose rates by standard dosimetric techniques has been challenging. To overcome this difficulty, we proposed a dose-rate assessment framework that combined the predictive modeling of plasma-induced damage in DNA by machine learning with existing radiation dose-DNA damage correlations. Our results indicated that low-temperature plasmas have a remarkably high dose rate that can be tuned by various process parameters. This attribute is beneficial for inducing radiobiological effects in a more controllable manner.

59 BASIC BIOLOGICAL SCIENCES↗

Temporal covariation of island arc Sr isotopes and seawater chemistry over the past 2 billion years

The chemical compositions of island arc basalts (IAB) reflect contributions from the mantle as well as fluids and melts from the subducting slab. Addition of radiogenic seawater Sr to oceanic crust through hydrothermal alteration and subsequent subduction is often invoked to explain elevated 87 Sr/ 86 Sr signatures in modern IAB. However, changes in the 87 Sr/ 86 Sr of island arc magmatic rocks through time has not been investigated, limiting our understanding of the factors influencing the Sr budgets of arcs throughout Earth’s history. To address this, we compiled 87 Sr/ 86 Sr values from island arc magmatic rocks ranging in age from modern to Paleoproterozoic, only including data from island arc localities that best preserve initial magmatic 87 Sr/ 86 Sr. Median initial 87 Sr/ 86 Sr values are consistently elevated compared to depleted mantle 87 Sr/ 86 Sr over this period, indicating persistent enrichment in radiogenic Sr in island arcs. Moreover, the elevation in island arc 87 Sr/ 86 Sr relative to the depleted mantle is variable. A notable rise in island arc 87 Sr/ 86 Sr during the late Neoproterozoic coincides with a steep increase in seawater 87 Sr/ 86 Sr and Sr concentration. To investigate this potential connectivity, we modeled the 87 Sr/ 86 Sr of island arc magmas between 0 and 830 Ma with inputs of depleted mantle 87 Sr/ 86 Sr, seawater 87 Sr/ 86 Sr, and seawater Sr concentration. The model reproduces the overall trajectory of the compiled data. We interpret the observed temporal variation in island arc 87 Sr/ 86 Sr values and its close association with fluctuations in seawater chemistry as evidence that changes in marine geochemistry have strongly influenced the Sr isotopic record of island arc magmas over time.

Science & Technology - Other Topics↗

Recommended Research Directions for Improving the Validation of Complex Systems Models.

Improved validation for models of complex systems has been a primary focus over the past year for the Resilience in Complex Systems Research Challenge. This document describes a set of research directions that are the result of distilling those ideas into three categories of research -- epistemic uncertainty, strong tests, and value of information. The content of this document can be used to transmit valuable information to future research activities, update the Resilience in Complex Systems Research Challenge's roadmap, inform the upcoming FY18 Laboratory Directed Research and Development (LDRD) call and research proposals, and facilitate collaborations between Sandia and external organizations. The recommended research directions can provide topics for collaborative research, development of proposals, workshops, and other opportunities.

99 GENERAL AND MISCELLANEOUS↗

The Algae Testbed Public Private Partnership -ATP 3 (Final Closeout Report)

The Algae Testbed Public Private Partnership (ATP3) was proposed in response to the ADVANCEMENTS IN SUSTAINABLE ALGAL PRODUCTION (ASAP) FUNDING OPPORTUNITY NUMBER: DE-FOA-0000615 TOPIC AREA 2-DEVELOPMENT OF REGIONAL ALGAL FEEDSTOCK TESTBED (RAFT) PARTNERSHIPS in 2012. For six years, from 2013 through 2019, ATP 3 was operated as a multi-institutional effort funded by the Department of Energy to establish a network of operating testbeds that brought together world-class scientists, engineers and business executives whose goal it was to increase stakeholder access to high quality facilities by making available an unparalleled array of outdoor cultivation, downstream equipment, and laboratory facilities to the algal R&D community. ATP 3 utilized the same powerful combination of facilities and technical expertise to support TEA, LCA and resource modeling and analysis activities, helping to close critical knowledge gaps and inform robust analyses of the state of technology for algal based biofuels and bioproducts. ATP 3 included testbed facilities at Arizona State University’s (ASU) Arizona Center for Algae Technology and Innovation (AzCATI), and augmented by university and commercial facilities in Hawaii (Cellana), California (Cal Poly San Luis Obispo), Georgia (Georgia Institute of Technology), and Florida (Florida Algae), in addition to partners at the National Renewable Energy Laboratory, Sandia National Laboratories, Valicor Renewables (Michigan), University of Texas at Austin (Texas), Commercial Algae Management (Georgia), Harmon Consulting (Hawaii), Evodos (Netherlands), and Litree (China).

09 BIOMASS FUELS↗

Investigating the interactions between wakes and floating wind turbines using FAST.Farm

As floating offshore wind progresses to commercial maturity, wake and array effects across a farm of floating offshore wind turbines (FOWTs) will become increasingly important. While wakes of land-based and bottom-fixed offshore wind turbines have been extensively studied, only recently has this topic become relevant for floating turbines. This work presents an investigation of the mutual interaction between the motions of floating wind turbines and wakes using FAST.Farm. While FAST.Farm has been extensively validated across a wide range of conditions, it has never been validated for FOWT applications. Hence, in the first part of this work, we validate FAST.Farm by comparing simulations of a single FOWT against high-fidelity results from large-eddy simulations available in the literature. The validation is based on wake meandering, mean wake deflection, and velocity deficit at different downstream locations. This validation showed that the original axisymmetric (polar) wake model of FAST.Farm overpredicts the vertical wake deflection induced by shaft tilt and floater pitch, while the new curled wake model is capable of properly capturing the vertical wake deflection. In the second part, we use FAST.Farm to analyze a small three-unit array of FOWTs with a spacing of 7 diameters across a wide range of environmental conditions. The same National Renewable Energy Laboratory 5 MW reference wind turbine atop the OC4-DeepCwind semisubmersible is adopted for the three FOWTs and for the validation against high-fidelity simulations. To assess the effect of the floating substructure, we compare the power production, tower-base moments, and blade-root moments obtained for the floating turbines with the results obtained in a fixed-bottom configuration. The main differences introduced by the floating substructure are the motions induced by the waves, the change in the natural frequencies of the tower caused by differences in the boundary condition at its base, and the larger vertical deflection of the wake deficit due to the mean pitch of the platform. The impact of these differences, as well as other minor effects, are analyzed in detail.

16 TIDAL AND WAVE POWER↗

A Pro‐Angiogenic Immunoprotective Membrane for Cell Therapies

Abstract Immunoisolation strategies that rely on porous membranes play an important role in cell transplantation therapies to protect cells from the host's immune system. These membranes must possess immunoprotective properties while facilitating the transport of nutrients and cell products to maintain the functional integrity of encapsulated cells. An easy and scalable process is described to fabricate a dual function porous polymeric membrane that shields cells against immune cell attack and promotes vascularization to address the nutritional and oxygen requirements of transplanted cells. The fabrication process results in a membrane cross‐section with a gradient of nanopores to micropores that support cell immunoisolation and interfacial vascularization requirements, respectively. The membranes demonstrate excellent cell compatibility and effectively prevent T cell transmigration without compromising glucose diffusion and oxygen permeability. In a murine subcutaneous implantation model, membranes are stable for 60 days and exhibit significantly reduced fibrous capsules, with enhanced vascularization near the membrane. These porous polymeric membranes can potentially be used as pro‐angiogenic immunoprotective membranes for cell transplantation applications where maximizing cell viability and function is of critical importance.

Engineering↗

Broad Applicability of Electrochemical Impedance Spectroscopy to the Measurement of Oxygen Nonstoichiometry in Mixed Ion and Electron Conductors

Oxygen non-stoichiometry is a fundamental feature of mixed ion and electron conductors (MIECs). In this work a general electrochemical method for determining non-stoichiometry in thin film MIECs, via measurement of the chemical capacitance, is demonstrated using ceria and ceria-zirconia (Ce 0.8 Zr 0.2 O 2-δ ) as representative materials. A.C. impedance data are collected from both materials at high temperature (750-900 °C) under reducing conditions with oxygen partial pressure (pO 2 ) in the range 10-13 to 10-20 atm. Additional measurements of ceria-zirconia films are made under relatively oxidizing conditions with pO 2 in the range 0.2 to 10 -4 atm and temperatures of 800-900 °C. Under reducing conditions, the impedance spectra are described by a simple circuit in which a resistor is in series with a resistor and capacitor in parallel, and thickness dependent measurements are used to resolve the capacitance into interfacial and chemical terms. Under more oxidizing conditions, the impedance spectra (of Ce 0.8 Zr 0.2 O 2-δ ) reveal an additional diffusional feature, which enables determination of the ionic resistance of the film in addition to the capacitance, and hence the transport properties. A generalized mathematical formalism is presented for recovering the non-stoichiometry from the chemical capacitance, without recourse to defect chemical models. The ceria non-stoichiometry values are in good agreement with literature values determined by thermogravimetric measurements but display considerably less scatter and are collected on considerably shorter timescales. Here, the thermodynamic analysis of Ce 0.8 Zr 0.2 O 2-δ corroborates earlier findings that introduction of Zr into ceria enhances its reducibility.

08 HYDROGEN↗

Microbial species and intraspecies units exist and are maintained by ecological cohesiveness coupled to high homologous recombination

Abstract Recent genomic analyses have revealed that microbial communities are predominantly composed of persistent, sequence-discrete species and intraspecies units (genomovars), but the mechanisms that create and maintain these units remain unclear. By analyzing closely-related isolate genomes from the same or related samples and identifying recent recombination events using a novel bioinformatics methodology, we show that high ecological cohesiveness coupled to frequent-enough and unbiased (i.e., not selection-driven) horizontal gene flow, mediated by homologous recombination, often underlie these diversity patterns. Ecological cohesiveness was inferred based on greater similarity in temporal abundance patterns of genomes of the same vs. different units, and recombination was shown to affect all sizable segments of the genome (i.e., be genome-wide) and have two times or greater impact on sequence evolution than point mutations. These results were observed in bothSalinibacter ruber, an environmental halophilic organism, andEscherichia coli, the model gut-associated organism and an opportunistic pathogen, indicating that they may be more broadly applicable to the microbial world. Therefore, our results represent a departure compared to previous models of microbial speciation that invoke either ecology or recombination, but not necessarily their synergistic effect, and answer an important question for microbiology: what a species and a subspecies are.

Science & Technology - Other Topics↗

Monte Carlo simulation to study the effect of molecular spin state on the spatio-temporal evolution of equilibrium magnetic properties of magnetic tunnel junction based molecular spintronics devices

With a variable spin state, paramagnetic molecules can affect the impact of magnetic exchange coupling strength between two ferromagnetic electrodes. Our magnetic tunnel junction based molecular spintronics devices (MTJMSD) were successful in connecting paramagnetic single molecular magnet (SMM) between two ferromagnetic electrodes. Isolated SMM exhibited a wide range of spin states. However, it was extremely challenging to identify the SMM spin state when connected to the ferromagnetic electrodes. Our prior experimental and Monte Carlo Simulations (MCS) studies showed that paramagnetic molecules produced unprecedented strong antiferromagnetic coupling between two ferromagnets at room temperature. The overall antiferromagnetic coupling occurred when a paramagnetic SMM made antiferromagnetic coupling to the first electrode and ferromagnetic coupling to the second ferromagnetic electrode. This paper studies the impact of variable molecular spin states of the SMMs, producing strong antiferromagnetic coupling between the ferromagnetic electrodes of MTJMSD. The MTJMSD used in this study was represented by an 11 x 50 x 50 Ising model, with 11 being the thickness of the MTJMSD and 5 x 10 x 50 being each electrode’s size. We employed a continuous MCS algorithm to investigate SMM’s spin state’s impact as a function of molecular exchange coupling strength and thermal energy.

36 MATERIALS SCIENCE↗

The contribution of black carbon to global ice nucleating particle concentrations relevant to mixed-phase clouds

Significance The Earth’s climate is affected by the radiative properties of clouds. In clouds containing both supercooled water droplets and ice particles (mixed-phase clouds), cloud lifetime and albedo are affected by the presence of ice nucleating particles (INP). After decades of research, the importance of black carbon (BC) as an INP remains unresolved. In this work, we determined the contribution of BC to INP concentrations ([INP]) from real-world wildfires and prescribed burns. We found that BC does not contribute significantly to [INP] in near-field biomass burning plumes. These results were applied as parameterizations to global climate model output. Combined with previous work on diesel-engine exhaust, we find that BC does not contribute significantly to global [INP] relevant to mixed-phase clouds.

54 ENVIRONMENTAL SCIENCES↗

A driven Kerr oscillator with two-fold degeneracies for qubit protection

We present the experimental finding of multiple simultaneous two-fold degeneracies in the spectrum of a Kerr oscillator subjected to a squeezing drive. This squeezing drive resulting from a three-wave mixing process, in combination with the Kerr interaction, creates an effective static two-well potential in the phase space rotating at half the frequency of the sinusoidal drive generating the squeezing. Remarkably, these degeneracies can be turned on-and-off on demand, as well as their number by simply adjusting the frequency of the squeezing drive. We find that when the detuning Δ between the frequency of the oscillator and the second subharmonic of the drive equals an even multiple of the Kerr coefficient K , Δ / K = 2 m , the oscillator displays m + 1 exact, parity-protected, spectral degeneracies, insensitive to the drive amplitude. These degeneracies can be explained by the unusual destructive interference of tunnel paths in the classically forbidden region of the double well static effective potential that models our experiment. Exploiting this interference, we measure a peaked enhancement of the incoherent well-switching lifetime, thus creating a protected cat qubit in the ground state manifold of our oscillator. Our results illustrate the relationship between degeneracies and noise protection in a driven quantum system.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

The View from the Top of the Mountain: Building a Community of Practice with the GridWise Transactive Energy Framework

The topic of “transactive energy” has received growing attention over the past eighteen months. It has been a part, for example, of the NY Reforming the Energy Vision discussions and the topic of activities such as the National Institute of Standards Transactive Energy Challenge. The growing discussion stems from the realization that new approaches are needed to efficiently and reliably integrate growing numbers of distributed energy resources. In anticipation of the applicability of transactive energy systems to emerging challenges in Grid integration, the GridWise® Architecture Council (GWAC) began to build a community of practice in the area of transactive energy systems. Starting with a workshop on the topic of “transactive energy” in May 2011, the Council brought together about a dozen interested researchers and practitioners from utilities, vendors, labs and academia to compare their approaches and experience in order to create common definitions and understanding within this topical area. This was followed in March 2012 with a second workshop during which about twice as many attendees continued the discussion. At this workshop the need for both a roadmap and a document documenting the foundations of transactive energy, common vocabulary and other definitional aspects was recognized. These two workshops led to the Council organizing the First International Conference and Workshop on Transactive Energy which took place May 23 – 24, 2013 in Portland, Oregon. The Council has continued this work with additional topical workshops, the Second International Conference and Workshop on Transactive Energy held in December 2014, and is currently organizing the Third International Conference and Workshop on Transactive Energy Systems to be held in May 2016. This article provides a summary of the Council’s work to build the community of practice through creation of a Transactive Energy Framework document and related activities. In addition to seeing transactive energy discussions on the agenda for many conferences there are also group activities relating to transactive energy being coordinated by both NIST and SGIP with which GWAC is also involved. The NIST work aims to develop and enhance modeling and simulation tools and integration into modeling and simulation platforms for Transactive Energy evaluation, as well as demonstrate how different transactive approaches may be used to improve reliability and efficiency of the electric grid. This will be accomplished through development of a set of scenarios that can serve as ongoing reference points for modeling and simulation. It is also an example of helping to develop a Transactive Energy community. The ongoing Transactive Energy Coordination Group formed by SGIP reviews the progress and directions of transactive energy activities in related parts of the SGIP and collaborating organizations such as GWAC. One of its activities is assembling a core set of transactive energy use cases as representative of the transactive energy interface requirements. This will enable assessment of interoperability requirements for transactive energy applications and an analysis of standards coverage, gaps, and future needs.

Tranasactive Energy↗

Potential scenarios for broadening stakeholder involvement in the implementing geological disposal technology platform

This paper analyses the potential for the involvement of different types of stakeholders in the Implementing Geological Disposal Technology Platform (IGD-TP). This analysis was conducted as part of the InSOTEC project, a three-year (2011- 2014) collaborative research project funded under the 7. Euratom Framework Programme (Grant Agreement nr. 269906). In our analysis, we consider the extent to which the IGDTP's practice as regards to stakeholder involvement matches its discourse, and what potential for improvement exists given its structural organisation as a European Technology Platform (ETPs). Technology Platforms (TPs) can be understood as knowledge networks, deliberately set up to influence (research) policy in a specific domain. We therefore use knowledge networks as a conceptual approach and look at the IGD-TP as a complex network which includes actors, knowledge and practices across different countries, focusing on a very specific topic (i.e. implementing geological disposal). We compare the way different stakeholders are involved in the IGD-TP to the practice of other ETPs, and explore how the IGD-TP is viewed by its members and by outsiders to the platform Applying Callon's framework of knowledge co-production (1999) we come to define different degrees of interaction between science, society and policy in view of defining research and development (R and D) priorities [1]. Subsequently we describe how these interactions could be conceptualised and interpreted for the IGD-TP. The current approach of the IGDTP can be mainly understood as classical model involving mainly expert stakeholders and scientists. Where there seems to be a good representation among IGD-TP members of industry, research institutes, and some members of the academic community this is not the case for other types of stakeholders, such as public authorities or civil society. At this stage, the overall approach of the IGD-TP would seem to restrict the scope of stakeholder involvement, as it narrows participation down to uniquely technology experts, hindering socio-technical manifestations. Our analysis nevertheless shows that there is room for engaging with a broader range of stakeholders in the field of radioactive waste management, if this is the intention of the IGD-TP. However, this would require a commitment to developing a common knowledge base including other stakeholders through a process of mutual adjustment and negotiation. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Toward perturbation theory methods on a quantum computer

Perturbation theory, used in a wide range of fields, is a powerful tool for approximate solutions to complex problems, starting from the exact solution of a related, simpler problem. Advances in quantum computing, especially over the past several years, provide opportunities for alternatives to classical methods. Here, we present a general quantum circuit estimating both the energy and eigenstates corrections that is far superior to the classical version when estimating second-order energy corrections. We demonstrate our approach as applied to the two-site extended Hubbard model. In addition to numerical simulations based on qiskit, results on IBM’s quantum hardware are also presented. Our work offers a general approach to studying complex systems with quantum devices, with no training or optimization process needed to obtain the perturbative terms, which can be generalized to other Hamiltonian systems both in chemistry and physics.

97 MATHEMATICS AND COMPUTING↗

Reexamining classical and quantum models for the D-Wave One processor: The role of excited states and ground state degeneracy

We revisit the evidence for quantum annealing in the D-Wave One device (DW1) based on the study of random Ising instances. Using the probability distributions of finding the ground states of such instances, previous work found agreement with both simulated quantum annealing (SQA) and a classical rotor model. Thus the DW1 ground state success probabilities are consistent with both models, and a different measure is needed to distinguish the data and the models. Here in this paper we consider measures that account for ground state degeneracy and the distributions of excited states, and present evidence that for these new measures neither SQA nor the classical rotor model correlate perfectly with the DW1 experiments. We thus provide evidence that SQA and the classical rotor model, both of which are classically efficient algorithms, do not satisfactorily explain all the DW1 data. A complete model for the DW1 remains an open problem. Using the same criteria we find that, on the other hand, SQA and the classical rotor model correlate closely with each other. To explain this we show that the rotor model can be derived as the semiclassical limit of the spin-coherent states path integral. We also find differences in which set of ground states is found by each method, though this feature is sensitive to calibration errors of the DW1 device and to simulation parameters.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Projected Impacts of Climate, Urbanization, Water Management, and Wetland Restoration on Waterbird Habitat in California’s Central Valley

The Central Valley of California is one of the most important regions for wintering waterbirds in North America despite extensive anthropogenic landscape modification and decline of historical wetlands there. Like many other mediterranean-climate ecosystems across the globe, the Central Valley has been subject to a burgeoning human population and expansion and intensification of agricultural and urban development that have impacted wildlife habitats. Future effects of urban development, changes in water supply management, and precipitation and air temperature related to global climate change on area of waterbird habitat in the Central Valley are uncertain, yet potentially substantial. Therefore, we modeled area of waterbird habitats for 17 climate, urbanization, water supply management, and wetland restoration scenarios for years 2006–2099 using a water resources and scenario modeling framework. Planned wetland restoration largely compensated for adverse effects of climate, urbanization, and water supply management changes on habitat areas through 2065, but fell short thereafter for all except one scenario. Projected habitat reductions due to climate models were more frequent and greater than under the recent historical climate and their magnitude increased through time. After 2065, area of waterbird habitat in all scenarios that included severe warmer, drier climate was projected to be >15% less than in the “existing” landscape most years. The greatest reduction in waterbird habitat occurred in scenarios that combined warmer, drier climate and plausible water supply management options affecting priority and delivery of water available for waterbird habitats. This scenario modeling addresses the complexity and uncertainties in the Central Valley landscape, use and management of related water supplies, and climate to inform waterbird habitat conservation and other resource management planning. Results indicate that increased wetland restoration and additional conservation and climate change adaptation strategies may be warranted to maintain habitat adequate to support waterbirds in the Central Valley.

54 ENVIRONMENTAL SCIENCES↗

Nuclear Computational Low Energy Initiative (NUCLEI)

This is the final report for University of Washington for the NUCLEI SciDAC-3. The NUCLEI -project, as defined by the scope of work, will develop, implement and run codes for large-scale computations of many topics in low-energy nuclear physics. Physics to be studied include the properties of nuclei and nuclear decays, nuclear structure and reactions, and the properties of nuclear matter. The computational techniques to be used include Quantum Monte Carlo, Configuration Interaction, Coupled Cluster, and Density Functional methods. The research program will emphasize areas of high interest to current and possible future DOE nuclear physics facilities, including ATLAS and FRIB (nuclear structure and reactions, and nuclear astrophysics), TJNAF (neutron distributions in nuclei, few body systems, and electroweak processes), NIF (thermonuclear reactions), MAJORANA and FNPB (neutrino-less double-beta decay and physics beyond the Standard Model), and LANSCE (fission studies).

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗