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At least 1,585 records · Page 88

Automated Integration of Continental-Scale Observations in Near-Real Time for Simulation and Analysis of Biosphere–Atmosphere Interactions

The National Ecological Observatory Network (NEON) is a continental-scale observatory with sites across the US collecting standardized ecological observations that will operate for multiple decades. To maximize the utility of NEON data, we envision edge computing systems that gather, calibrate, aggregate, and ingest measurements in an integrated fashion. Edge systems will employ machine learning methods to cross-calibrate, gap-fill and provision data in near-real time to the NEON Data Portal and to High Performance Computing (HPC) systems, running ensembles of Earth system models (ESMs) that assimilate the data. For the first time gridded EC data products and response functions promise to offset pervasive observational biases through evaluating, benchmarking, optimizing parameters, and training new machine learning parameterizations within ESMs all at the same model-grid scale. Leveraging open-source software for EC data analysis, we are already building software infrastructure for integration of near-real time data streams into the International Land Model Benchmarking (ILAMB) package for use by the wider research community. We will present a perspective on the design and integration of end-to-end infrastructure for data acquisition, edge computing, HPC simulation, analysis, and validation, where Artificial Intelligence (AI) approaches are used throughout the distributed workflow to improve accuracy and computational performance.

Durden, David J.↗

Extrapolating Contaminant Effects from Individuals to Populations: A Case Study on Nanoparticle Toxicity to Daphnia Fed Environmentally Relevant Food Levels

Ecological risk assessment (ERA) is charged with assessing the likelihood a chemical will have adverse environmental or ecological effects. When assessing the risk of a potential contaminant to biological organisms, ecologists are most concerned with the sustainability of populations of organisms, rather than protecting every individual. However, ERA most commonly relies on data on the effect of a potential contaminant on individuals because these experiments are more feasible than costly population-level exposures. In this work, we address the challenge of extrapolating these individual-level results to predict population-level effects. Previous per-capita population growth rate estimates calculated from individual-level exposures of Daphnia pulicaria to silver nanoparticles (AgNPs) at different food rations predict a critical daily food requirement for daphnid populations exposed to 200 μg/L AgNPs to avoid extinction. To test this, we exposed daphnid populations to the same AgNP concentration at three different food inputs, with the lowest ration close to the extinction threshold predicted from data on individuals. The two populations with the higher food inputs persisted, and the population with the lowest food input went extinct after 50 days but did persist through two generations. Further, we demonstrate that we can extrapolate between these levels of biological organization by parameterizing an individual-level biomass model with data on individuals’ response to AgNPs and using these parameters to predict the outcome for control and AgNP-exposed populations. Key to successful extrapolation is careful modeling of temporal changes in resource density, driven by both the experimental protocols and feedback from the consumer. The implication for ecotoxicology is that estimates of extinction thresholds based on studies of individuals may be reliable predictors of population outcomes, but only with careful treatment of resource dynamics.

54 ENVIRONMENTAL SCIENCES↗

Quality-Score Refinement of SSU rRNA Gene Pyrosequencing Differs Across Gene Region for Environmental Samples

Due to potential sequencing errors in pyrosequencing data, species richness and diversity indices of microbial systems can be miscalculated. The “traditional” sequence refinement method is not sufficient to account for overestimations (e.g., length, primer errors, ambiguous nucleotides). Recent in silico and single-organism studies have revealed the importance of sequence quality scores in the estimation of ecological indices; however, this is the first study to compare quality-score stringencies across four regions of the SSU rRNA gene sequence (V1V2, V3, V4, and V6) with actual environmental samples compared directly to corresponding clone libraries produced from the same primer sets. The nucleic acid sequences determined via pyrosequencing were subjected to varying quality-score cutoffs that ranged from 25 to 32, and at each quality-score cutoff, either 10 or 15 % of the nucleotides were allowed to be below the cutoff. When species richness estimates were compared for the tested samples, the cutoff values of Q27 15% , Q30 10% , and Q32 15% for V1V2, V4, and V6, respectively, estimated similar values as obtained with clone libraries and Sanger sequencing. The most stringent Q tested (Q32 10% ) was not enough to account for species richness inflation of the V3 region pyrosequence data. Results indicated that quality-score assessment greatly improved estimates of ecological indices for environmental samples (species richness and α-diversity) and that the effect of qualityscore filtering was region-dependent.

59 BASIC BIOLOGICAL SCIENCES↗

Chemistry of the consumption and excretion of the bumphead parrotfish ( Bolbometopon muricatum ), a coral reef mega-consumer

Bolbometopon muricatum are ecologically unique mega-consumers in coral reef ecosystems. They primarily divide their dietary intake between living scleractinian corals and coral rock, a substrate richly colonized by non-coral biota. Here we examine how the chemical, structural, and energetic content of these two main classes of forage material may influence B. muricatum feeding behavior and selectivity. We then also examine nutrient content, pH, and alkalinity of the carbonate-rich feces of B. muricatum as a step toward understanding how B. muricatum defecation could affect reef nutrient dynamics and localized seawater chemistry. Our results suggest that by most measures, coral rock constitutes a richer food source than living corals, exhibiting higher levels of eight biologically relevant elements, and containing approximately three times greater caloric value than living corals. Additionally, the two forage types also presented distinct mineralogy, with the coral rock resembling a Mg-enriched carbonate phase in contrast to the primarily aragonitic live corals. Despite the fact that individual B. muricatum excrete tons of macerated coral annually, the low measured concentrations of N and P in feces suggest that this excretion may have relatively minor effects of reef macronutrient budgets. We also observed negligible local-scale impacts of B. muricatum feces on seawater pH and alkalinity. The approaches applied here integrate perspectives from marine biogeochemistry, materials science, and ecology. Altogether, these results provide preliminary insight into how reef chemistry could shape foraging of this dominant and vulnerable coral reef consumer and how it, in turn, might affect the chemistry of these reefs.

54 ENVIRONMENTAL SCIENCES↗

Estimation of groundwater discharge and associated chemical fluxes into Poyang Lake, China: approaches using stable isotopes (δD and δ{sup 18}O) and radon

Poyang Lake is the largest freshwater lake in China and is well known for its ecological and economic importance. Understanding the contribution of groundwater to Poyang Lake is important for the lake’s protection and management. In this study, stable isotopes (δD and δ{sup 18}O), {sup 222}Rn measurements, and corresponding models ({sup 222}Rn and {sup 18}O mass balance models) were employed to evaluate the groundwater discharge and associated chemical inputs to Poyang Lake. The results showed that the distribution of δ{sup 18}O in the lake water reflects the groundwater discharge into the lake. The groundwater discharge estimated using the {sup 222}Rn mass balance model was in reasonable agreement with the groundwater discharge derived from the {sup 18}O mass balance model. The {sup 222}Rn mass balance model showed that the groundwater discharge rate was 24.18 ± 6.85 mm/d with a groundwater discharge flux of (2.24 ± 0.63) × 10{sup 7} m{sup 3}/d, which accounts for 6.52–11.14% of river-water input in the Poyang Lake area. The groundwater discharge flux estimated using the {sup 18}O mass balance model was 3.17 × 10{sup 7} m{sup 3}/d, and the average groundwater discharge rate was 26.62 mm/d. The estimated groundwater discharge was used to estimate the associated chemical fluxes. It was found that groundwater-derived heavy metals such as iron and manganese are potential threats to the lake ecological system because of their large inputs from groundwater discharge.

58 GEOSCIENCES↗

Water Supply System with Light-Water Production Based on a Nuclear Desalination Complex

The aim of this work is to develop an ecologically safe energy efficient system of supplying water with production of light-water on the basis of a nuclear desalination complex with low-power reactors in order to solve the problem of water shortage, reduction of ecological load on the environment, and secure freshwater in regions where it is in short supply. A fundamentally new combined scheme of a water supply system with light-water produced on the basis of nuclear desalination and water circulation (recycling) using membrane and distillation methods is proposed. The system provides for maximum extraction of contaminants before the desalination stage by less expensive methods of purification, which decreases the load on desalination and makes it more efficient.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Model-based analysis of environmental controls over ecosystem primary production in an alpine tundra dry meadow

We investigated several key limiting factors that control alpine tundra productivity by developing an ecosystem biogeochemistry model. The model simulates the coupled cycling of carbon (C), nitrogen (N), and phosphorus (P) and their interactions with gross primary production (GPP). It was parameterized with field observations from an alpine dry meadow ecosystem using a global optimization strategy to estimate the unknown parameters. The model, along with the estimated parameters, was first validated against independent data and then used to examine the environmental controls over plant productivity. Our results show that air temperature is the strongest limiting factor to GPP in the early growing season, N availability becomes important during the middle portion of the growing season, and soil moisture is the strongest limiting factors by late in the growing season. Overall, the controls over GPP during the growing season, from strongest to weakest, are soil moisture content, air temperature, N availability, and P availability. This simulation provides testable predictions of the shifting nature of physical and nutrient limitations on plant growth. The model also indicates that changing environmental conditions in the alpine will likely lead to changes in productivity. For example, warming eliminates the control of P availability on GPP and makes N availability surpass air temperature to become the second strongest limiting factor. In contrast, an increase in atmospheric nutrient deposition eliminates the control of N availability and enhances the importance of P availability. Furthermore, these analyses provide a quantitative and conceptual framework that can be used to test predictions and refine ecological analyses at this long-term ecological research site.

54 ENVIRONMENTAL SCIENCES↗

Drought shifts dissolved organic matter sources from above- to belowground and stress-induced processes in Amazon white-sand forests

White-sand forests contribute significantly to dissolved organic matter (DOM) production in the central Amazon, forming blackwater rivers that dominate organic matter export from the Amazon basin to the ocean. Despite their importance in controlling DOM export, white-sand forests are understudied, and it remains unclear whether systematic changes in the formation of blackwater DOM occur and how seasonal variations and extremes like El Niño-associated droughts impact them. We collected soil porewater from two central Amazon white-sand forests for two years, spanning a wet La Niña year followed by an El Niño drought year. The molecular composition of DOM was analyzed using high-resolution mass spectrometry, and correlation network analysis was employed to identify ecologically meaningful DOM subsets. Using additional chemical characterization, database annotations, correlation with 14C-age of DOM and climatic variables, and ecological null modeling, we propose five distinct DOM sources: plant litter and throughfall, soil organic matter (SOM) decomposition, root exudation, and two drought response subsets of likely microbial and plant origin. During drought conditions, aboveground plant-derived compounds decreased, while SOM products, root exudates, and drought response compounds increased. These drought responses were qualitatively similar in both years but notably amplified in the drier El Niño year. Drought amplified deterministic control over DOM composition, indicating that DOM reflected directed biological responses and that future droughts are likely to generate similar shifts. Overall, drought substantially altered belowground carbon cycling by shifting DOM sources and inducing stress responses, effects expected to recur and potentially intensify under future climate scenarios.

Lange, Dan F.↗

Balancing global water availability and use at basin scale in an integrated assessment model

Water is essential for the world’s food supply, for energy production, including bioenergy and hydroelectric power, and for power system cooling. Water is already scarce in many regions of the world and could present a critical constraint as society attempts simultaneously to mitigate climate forcing and adapt to climate change, and to provide for a larger and more prosperous human population. Numerous studies have pointed to growing pressures on the world’s scarce fresh water resources from population and economic growth, and climate change. This study goes further. We use the Global Change Assessment Model to analyze interactions between population, economic growth, energy, land and water resources simultaneously in a dynamically evolving system where competing claims on water resources from all claimants—energy, land, and economy—are reconciled with water resource availability—from renewable water, non-renewable groundwater sources and desalinated water—across 14 geopolitical regions, 151 agriculture-ecological zones, and 235 major river basins. We find that previous estimates of global water withdrawal projections are overestimated. Model simulations show that it is more economical in some basins to alter agricultural and energy activities rather than utilize non-renewable groundwater or desalinated water. This study highlights the importance of accounting for water as a binding factor in agriculture, energy and land use decisions in IAMs and implications for global responses to water scarcity, particularly in the trade of agricultural commodities and land-use decisions.

basin↗

Behavioral responses of fish to a current-based hydrokinetic turbine under mutliple operational conditions

There is significant international interest in developing current-based marine and hydrokinetic (MHK) technologies to capture the power of tidal energy. However, concerns have been raised regarding the ecological effects of these projects on fish, including the risk of blade collision and behavioral impacts such as the disruption of migratory behavior and food acquisition and displacement from preferred habitats. In this study, we conducted mobile hydroacoustic surveys to track fish as they approached a tidal turbine deployed in Cobscook Bay, Maine. There was a significant decline in fish numbers with decreasing distance to the turbine, beginning approximately 140 m from the turbine. Similar declines were not observed at control transects or when the turbine was not spinning. The decline in fish numbers appeared to be the result of horizontal displacement, not vertical, movements to avoid the turbine. Noise rather than visual cues or flow field disturbance seemed to be a likely explanation for the reduced number of fish near the turbine. This finding, combined with near-field blade collision studies indicating a low probability of encounter, suggests that a single turbine poses a low collision risk to pelagic fish and that a single turbine is likely to result in minimal behavioral responses by fish. However, the risk may be different with additional devices, which will become more relevant as commercial-scale MHK arrays come under consideration. Therefore, the risks associated with commercial-scale operations will ultimately have to be evaluated to fully understand the ecological impacts of MHK devices.

42 ENGINEERING↗

Evaluating ecosystem water use efficiency under drought stress: a case study of the Helan Mountain region, northwest China

Context Water use efficiency (WUE) is a fundamental ecological indicator links carbon assimilation and water loss in terrestrial ecosystems. Understanding its responses to drought stress is essential for adaptive ecosystem management, particularly in climate-sensitive mountain landscapes. Objectives This study aimed to investigate drought-driven variations in WUE across major vegetation types in the Helan Mountain region of Northwest China. Specifically, we sought to identify dominant ecological drivers of WUE variability and to disentangle their relative importance and causal pathways. Methods We quantified WUE using the Moderate Resolution Imaging Spectroradiometer (MODIS) products and the Drought Severity Index (DSI) data from 2001 to 2020. To examine WUE – drought relationships across contrasting vegetation types, we employed a spatially explicit analytical framework integrating Random Forest (RF) modeling, partial correlation analysis, and structural equation modeling (SEM). Results Regional WUE exhibited relatively stable interannual dynamics, yet pronounced spatial heterogeneity that was strongly modulated by drought conditions. Vegetation properties, particularly Leaf Area Index (LAI) and Normalized Difference Vegetation Index (NDVI), emerged as the dominant determinants of WUE, with NDVI alone explaining over 20% of its spatial variance in forest and grassland during non-drought periods. SEM analyses revealed that climate forcing influenced WUE mainly through indirect pathways mediated by soil moisture availability and vegetation structural dynamics, rather than through direct climatic controls. Among all regulating factors, LAI acted as the central control node governing ecosystem carbon–water coupling. In contrast, short-term climatic stress, especially atmospheric demand and drought duration, exerted weak or negative direct effects on WUE. Ecosystem-specific responses were observed, with croplands mainly regulated by soil water availability, whereas forests and grasslands showed more sensitive to atmospheric drought stress. Together, these results reveal a hierarchical control framework where soil–vegetation interactions mediate climate impacts on WUE, driving strong spatial heterogeneity in drought responses across mountain landscapes. Conclusions Our findings highlight the pivotal role of indirect drought effects mediated by vegetation and soil processes in shaping ecosystem WUE. The identified soil–vegetation–climate regulatory hierarchy provides mechanistic insight into landscape–scale drought sensitivity and supports integrated modeling approaches for evaluating ecosystem resilience and sustainable management in arid mountain regions.

China↗

Isolation and characterization of 13 microsatellite loci for the Neotropical otter, Lontra longicaudis, by next generation sequencing

The Neotropical otter, Lontra longicaudis, is an ecologically important species for freshwater ecosystems that is threatened due to habitat destruction and hunting. However, there is limited information regarding the population sizes, genetic diversity, genetic structure and gene flow of the species, which is crucial for the elaboration of conservation plans. The aim of this study was to isolate and characterize microsatellites for L. longicaudis, using Illumina paired-end-sequencing. Initial amplification tests were performed in 48 loci, out of which, 13 yielded high-quality PCR products and thus were further evaluated. Genetic diversity and discrimination power of the 13 microsatellite loci was assessed using 19 non-invasive samples collected in the Jamapa basin in Veracruz, Mexico and blood samples from six captive individuals. All loci were polymorphic, the number of alleles per locus ranged from 4 to 10, the observed heterozygosity from 0.21 to 0.69, and the expected heterozygosity from 0.55 to 0.82. The combined set of 13 microsatellites showed a high power for discriminating among individuals (probability of identity P ID = 1.551 × 10 -16 ) and among siblings (probability of identity of siblings P IDSIB = 3.349 × 10 -06 ). A combination of nine loci are sufficient to discriminate among siblings with high confidence (P IDSIB < 0.0001). The new set of microsatellites for the Neotropical otter reported here will provide a useful genetic tool to assess population genetic patterns and ecological parameters of the species.

59 BASIC BIOLOGICAL SCIENCES↗

The AmeriFlux network: A coalition of the willing

AmeriFlux scientists were early adopters of a network-enabled approach to ecosystem science that continues to transform the study of land-atmosphere interactions. In the 20 years since its formation, AmeriFlux has grown to include more than 260 flux tower sites in the Americas that support continuous observation of ecosystem carbon, water, and energy fluxes. Many of these sites are co-located within a similar climate regime, and more than 50 have data records that exceed 10 years in length. In this prospective assessment of AmeriFlux's strengths in a new era of network-enabled ecosystem science, we discuss how the longevity and spatial distribution of AmeriFlux data make them exceptionally well suited for disentangling ecosystem response to slowly evolving changes in climate and land-cover, and to rare events like droughts and biological disturbances. More recently, flux towers have also been integrated into environmental observation networks that have broader scientific goals; in North America these include the National Ecological Observatory Network (NEON), Critical Zone Observatory network (CZO), and Long-Term Ecological Research network (LTER). AmeriFlux stands apart from these other networks in its reliance on voluntary participation of individual sites, which receive funding from diverse sources to pursue a wide, transdisciplinary array of research topics. This diffuse, grassroots approach fosters methodological and theoretical innovation, but also challenges network-level data synthesis and data sharing to the network. In conclusion, while AmeriFlux has had strong ties to other regional flux networks and FLUXNET, better integration with networks like NEON, CZO and LTER provides opportunities for new types of cooperation and synergies that could strengthen the scientific output of all these networks.

54 ENVIRONMENTAL SCIENCES↗

Scale-dependent enhancement of productivity and stability in xenic Nannochloropsis cultures

Although bacterial amendments can enhance algal productivity and stability, the development of algal-bacteria consortia for commercial-scale utilization is limited. Here, for this work, we used an established high-throughput approach to generate algal-bacteria consortia, and tested consortia performance at spatial scales from microplates to 320 L raceway ponds. We used both lab and field-reared strains of Nannochloropsis oceanica to build consortia. In some experiments, we imposed environmental perturbations to test the ability of bacteria to enhance algal culture stability. In repeated assays at the scale of well plates, flasks, and bioreactors, strong effects of bacterial amendments on N. oceanica were observed. These effects were most dramatic when cultures experienced stressors such as temperature perturbations or removal of CO 2 augmentation. Isolates that were advanced for field testing included species in the genera Algoriphagus, Oceanicaulis, and Marinobacter. When consortia were generated in the field, positive effects of bacterial amendments were not observed. The amended bacteria were outcompeted, and bacterial community composition across treatments converged after the first grow out. These results highlight the complexity of using consortia in open systems, where interactions between the existing bacterial community, inoculated bacteria, and changing environmental conditions are layered upon other differences in scale and cultivation regimes. Moreover, functionally redundant bacteria are likely present in the field. Following this work, we hypothesize that tight interactions (e.g., obligate relationships between partners) will scale more predictably to outdoor systems. We suggest relying on true synthetic ecological approaches in which the relationships between bacteria and algae partners are well understood, or synthetic ecological approaches coupled with high throughput approaches to design and test consortia. We also recommend future work to examine the effect of algae-bacteria inoculation ratios on productivity and stability, track dynamics of partners through time, and manage ponds to retain beneficial symbioses.

59 BASIC BIOLOGICAL SCIENCES↗

Visualization of in-situ chemical flow through sand using neutron radiography

Chemical movement through soil is an important process in agriculture and ecology. Observing the spatial and temporal dynamics of these processes using conventional chemical ecology methods requires techniques that are destructive and/or lack resolution. Neutron radiography has the capability to allow chemical motion through sand/soil to be tracked with high spatial and temporal resolution, and we show that it allows for the motion of hydrophobic and hydrophilic chemicals to be distinguished. This technique can have an important impact on introducing neutron radiography to a wider community and into our understanding of chemical communication dynamics between plants and movement of applied chemicals in agricultural soils.

MORRIS, KATHRYN [Xavier University]↗

Contrasting effects of land-use and local disturbance on plant and pollinator communities in wetlands

While pollinators and wetlands both provide important ecosystem services (e.g., the pollination of flowering plants and improving water quality), the relationship between the two is not well understood. Both biotic and abiotic effects can mediate the local wetland flower and pollinator community. In this study, we investigated how land use, including a land use gradient at five different radii, from 250 m to 2 km, along with anthropogenic disturbance affected pollinators in wetland ecosystems. We surveyed the abundance and diversity of plant-pollinator communities in fifteen different wetlands across two years. We also tested the relationship between water quality and temperature, and the abundance and diversity of flowering plants and pollinating insects. Our results suggest that increasing temperature, which was strongly associated with developed land use, had a negative effect on the floral display of wetland plants, as well as the abundance of all flower visitors and hover flies. Hover fly abundance was also positively associated with agricultural land use and total nitrogen in the water. Meanwhile, the abundance of female bees was affected by an interaction between temperature and disturbance: female bees were most abundant when temperatures were lower in areas of low disturbance. In contrast, pollinator species richness increased with temperature when developed land use was low, and floral diversity was strongly affected by several interactions between disturbance, land use, and water quality. Finally, the community composition of both plants and insects varied significantly among low, medium, and high disturbance categories, with weedier, non-native species being significantly associated with areas of higher disturbance and in sites with greater anthropogenic land use. We demonstrate that ecological communities shift significantly in response to anthropogenic change. Our work also illustrates the importance of quantifying interactions between land use and local disturbance with abiotic factors such as temperature and water quality on ecological systems.

Disturbance↗

Ten questions concerning housing sufficiency

Housing sufficiency is an emerging concept in the provision of environmentally sustainable housing. It aims for demand-side strategies that reduce excessive, aggregate consumption levels to promote efficient resource utilization and sustainability in the construction sector while providing everyone with a decent standard of housing. However, it is challenging to implement as it interferes with housing-related social and cultural norms. This paper poses and answers ten questions that highlight the challenges, opportunities, and examples of sufficiency strategies in the context of housing provision and the environmental crisis. Question 1 discusses the need for sufficiency as a tool to complement supply-side strategies including efficiency and renewable energy strategies in providing housing. Question 2 examines the concept of housing sufficiency from different perspectives, such as ecological economics and social ecology. Question 3 summarizes the methods used to measure housing sufficiency, with specific focus on the upper and lower limits that respect planetary boundaries and basic human needs. Questions 4 and 5 describe the benefits, potential drawbacks, and rebound effects of housing sufficiency. Questions 6 and 7 examine housing sufficiency in developed and developing countries, respectively. Questions 8 and 9 discuss design strategies, housing occupancy, and tenure models that are needed for housing sufficiency. Finally, Question 10 provides a of policies and regulations that are needed to systematically support the implementation of sufficiency strategies. The questions and answers provide insights for wider application of housing sufficiency in research and practice.

Arceo, Aldrick↗

Scaling up our understanding of non-consumptive effects in insect systems

Here, non-consumptive effects (NCEs) of predators on prey is an important topic in insect ecology with potential applications for pest management. NCEs are changes in prey behavior and physiology that aid in predation avoidance. While NCEs can have positive outcomes for prey survival there may also be negative consequences including increased stress and reduced growth. These effects can cascade through trophic systems influencing ecosystem function. Most NCEs have been studied at small spatial and temporal scales. However, recent studies show promise for the potential to manipulate NCEs for pest management. We suggest the next frontier for NCE studies includes manipulating the landscape of fear to improve pest control, which requires scaling-up to field and landscape levels, over ecologically relevant time frames.

59 BASIC BIOLOGICAL SCIENCES↗