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Prototype Laboratory Concept

The prototype laboratory concept was developed to simplify the laboratory design process, and should be considered for use as a new laboratory design methodology. Many developing countries lack adequate public and animal health laboratories and typically do not have the economic means and the design and construction expertise to build a laboratory on their own. These countries rely on international sponsors to provide the funds necessary to design and construct a laboratory. However, these international sponsors are often located far away, making travel back and forth difficult, which leads to an increase in overall costs and delays for the project. The prototype laboratory concept and design methodology were developed to streamline the design process, saving time and money, while also minimizing the number of errors that typically arise using a traditional design process by providing well considered design decisions in advance of the project. By solving numerous detailed design issues early, this methodology will allow the time, attention and energies of the design team to be focused on addressing the specific needs of the end users, the unique design challenges related to a given site and scientific program, and the biosafety and biosecurity risks associated with the scientific activities planned to be conducted in the facility. While the concept could be expanded to cover other types of laboratories to date, it has primarily focused on supporting the implementation of good laboratory design best practices for infectious disease diagnostic and research laboratories for both the human and animal health sectors. This report presents the laboratory design concept and details associated with the modular layouts. It builds on the work previously provided in the interim prototype laboratory concept report delivered to the Cooperative Biological Engagement Program (CBEP) at the Defense Threat Reduction Agency (DTRA) in 2014. This report includes a number of revised and additional module layouts, more detailed information regarding laboratory finishes and equipment, engineering service information, electrical and lighting layouts, plumbing service information and two mechanical service options for each prototype module. Additionally, this report also includes a description of a cost estimating tool that will accompany this report and allow funding agencies to generate an approximate cost for the construction of a laboratory that utilizes the prototype laboratory concept modules. This report is intended to serve a complete document and includes all relevant information from the 2014 prototype laboratory concept report.

42 ENGINEERING↗

Mechanisms of Pressure-Induced Phase Transitions by Real-Time Laue Diffraction

Synchrotron X-ray radiation Laue diffraction is a widely used diagnostic technique for characterizing the microstructure of materials. An exciting feature of this technique is that comparable numbers of reflections can be measured several orders of magnitude faster than using monochromatic methods. This makes polychromatic beam diffraction a powerful tool for time-resolved microstructural studies, critical for understanding pressure-induced phase transition mechanisms, by in situ and in operando measurements. The current status of this technique, including experimental routines and data analysis, is presented along with some case studies. The new experimental setup at the High-Pressure Collaborative Access Team (HPCAT) facility at the Advanced Photon Source, specifically dedicated for in situ and in operando microstructural studies by Laue diffraction under high pressure, is presented.

36 MATERIALS SCIENCE↗

Turbofan Noise Reduction Associated With Increased Bypass Nozzle Flow

An advanced 22-in. scale model turbofan, typical of a current-generation aircraft engine design by GE Aircraft Engines, was tested in NASA Glenn Research Center s 9- by 15- Foot Low-Speed Wind Tunnel to explore the far-field acoustic effects of an increased bypass nozzle area at simulated aircraft speeds of takeoff, approach, and landing. The wind-tunnel-scale model consisted of the bypass stage fan, stators, and nacelle (including the fan exit nozzle) of a typical turbofan. This fan-stage test was part of the NASA Glenn Fan Broadband Source Diagnostic Test, second entry, which acquired aeroacoustic results over a range of test conditions. A baseline nozzle was selected, and the nozzle area was chosen for maximum performance at sea-level conditions. Two additional nozzles were also tested--one with a 5.4-percent increase in nozzle area over the baseline nozzle (sized for design point conditions), corresponding to a 5-percent increase in fan weight flow, and another nozzle with a 10.9-percent increase in nozzle area over the baseline nozzle (sized for maximum weight flow at sea-level conditions), corresponding to a 7.5 percent increase in fan weight flow. Measured acoustic benefits with increased nozzle area were very encouraging, showing overall sound power level reductions of 2 dB or more (left graph) while the stage adiabatic efficiency (right graph) and thrust (final graph) actually increased by several percentage points. These noise-reduction benefits were seen to include both rotor-interaction tones and broadband noise, and were evident throughout the range of measured sideline angles.

Woodward, Richard P.↗

Quantitative planar laser-induced fluorescence imaging of multi-component fuel/air mixing in a firing gasoline-direct-injection engine: Effects of residual exhaust gas on quantitative PLIF

A study of in-cylinder fuel-air mixing distributions in a firing gasoline-direct-injection engine is reported using planar laser-induced fluorescence (PLIF) imaging. A multi-component fuel synthesised from three pairs of components chosen to simulate light, medium and heavy fractions was seeded with one of three tracers, each chosen to co-evaporate with and thus follow one of the fractions, in order to account for differential volatility of such components in typical gasoline fuels. In order to make quantitative measurements of fuel-air ratio from PLIF images, initial calibration was by recording PLIF images of homogeneous fuel-air mixtures under similar conditions of in-cylinder temperature and pressure using a re-circulation loop and a motored engine. This calibration method was found to be affected by two significant factors. Firstly, calibration was affected by variation of signal collection efficiency arising from build-up of absorbing deposits on the windows during firing cycles, which are not present under motored conditions. Secondly, the effects of residual exhaust gas present in the firing engine were not accounted for using a calibration loop with a motored engine. In order to account for these factors a novel method of PLIF calibration is presented whereby 'bookend' calibration measurements for each tracer separately are performed under firing conditions, utilising injection into a large upstream heated plenum to promote the formation of homogeneous in-cylinder mixtures. These calibration datasets contain sufficient information to not only characterise the quantum efficiency of each tracer during a typical engine cycle, but also monitor imaging efficiency, and, importantly, account for the impact of exhaust gas residuals (EGR). By use of this method EGR is identified as a significant factor in quantitative PLIF for fuel mixing diagnostics in firing engines. The effects of cyclic variation in fuel concentration on burn rate are analysed for different fuel injection strategies. Finally, mixture distributions for late injection obtained using quantitative PLIF are compared to predictions of computational fluid dynamics calculations. (author)

33 ADVANCED PROPULSION SYSTEMS↗

Effect of post injections on mixture preparation and unburned hydrocarbon emissions in a heavy-duty diesel engine

This work explores the mechanisms by which a post injection can reduce unburned hydrocarbon (UHC) emissions in heavy-duty diesel engines operating at low-temperature combustion conditions. Post injections, small, close-coupled injections of fuel after the main injection, have been shown to reduce UHC in the authors’ previous work. In this work, we analyze optical data from laser-induced fluorescence of both CH 2 O and OH and use chemical reactor modeling to better understand the mechanism by which post injections reduce UHC emissions. The results indicate that post-injection efficacy, or the extent to which a post injection reduces UHC emissions, is a strong function of the cylinder pressure variation during the post injection. However, the data and analysis indicate that the pressure and temperature rise from the post injection combustion cannot solely explain the UHC reduction measured by both engine-out and optical diagnostics. In conclusion, the fluid-mechanic, thermal, and chemical interaction of the post injection with the main-injection mixture is a key part of UHC reduction; the starting action of the post jet and the subsequent entrainment of surrounding gases are likely both important processes in reducing UHC with a post injection.

33 ADVANCED PROPULSION SYSTEMS↗

Five kHz thermometry in turbulent spray flames using chirped-probe pulse femtosecond CARS, part I: Processing and interference analysis

We have applied chirped-probe-pulse (CPP) femtosecond (fs) coherent anti-Stokes Raman scattering for 5 kHz temperature measurements in turbulent spray flames. The CPP fs CARS technique has previously been used to perform spectroscopic temperature measurements in highly turbulent laboratory burners with excellent accuracy, precision, temporal resolution, and spatial resolution. In this paper, ultrafast CARS measurements in spray flames are presented as part of a larger effort to provide spatially and temporally resolved temperature fields in harsh spray environments. The Sydney Needle Spray Burner (SYNSBURN TM ) was used to stabilize turbulent spray flames of acetone and ethanol. The burner features a retractable fuel injector so that the droplet density at the nozzle exit could be systematically varied. Results from selected regions of the turbulent spray flames are discussed in detail to highlight the challenges of CPP fs CARS temperature measurements. Sources of spectral distortion due to interaction with droplets are discussed along with an uncertainty analysis. The passage of fuel through the probe volume caused varying levels of signal degradation and resulted in complete signal loss on approximately 10% of the laser shots for dense spray conditions. The interferences are attributed to two separate phenomena and are categorized based on the probable phase of the fuel – liquid or gas. Interference caused by liquid fuel was unavoidable in certain regions at certain operating conditions, but easily identified and removed. Interference from vapor fuel was more problematic as the nitrogen signal was only moderately corrupted in the high-frequency portion of the spectrum, and the temperature was generally biased to higher values. Rejecting individual signal spectra, based on a fitting error threshold, was shown to be effective in excluding shots with significant interference from fuel droplets, but shots with only minor interference require a more-advanced rejection criterion. Analysis of the temperature fields for a few selected conditions is presented showing trends with the atomization quality of the liquid fuel. Fourier analysis revealed hydrodynamic instabilities in the shear layer and relatively weak thermoacoustic instabilities in the reaction zone.

42 ENGINEERING↗

High-quality Acinetobacter genomes recovered from combat wounds via metagenomic sequencing resemble cultured isolate genomes

The ability to accurately characterize wound pathogens is critical to informing clinical decisions for wound infections with complex treatment requirements. Acinetobacter baumannii is an impactful nosocomial pathogen in combat wounds and civilian hospital-acquired infections. An informed understanding of the phylogenetics and epidemiology of A. baumannii infections in military and civilian environments could guide approaches that improve antibiotic treatment regimens for both military and civilian patients. Whole-genome data for bacterial strains can be difficult to obtain due to challenges in culturing isolates from preserved military specimens. Metagenomic sequencing and assembly create opportunities for genomic analysis of pathogens directly from clinical specimens. The ability to perform comparative analyses between metagenome-derived genomes and culture-derived genomes would support a range of comparative bacterial genomic studies. Wound tissue biopsy and effluent samples from combat injuries were subjected to metagenomic sequencing and assembly. In total, 42 microbial metagenome-assembled genomes (MAGs) were obtained directly from metagenomic sequence data, 36 of which were designated “high” quality. Thirty of these genomes corresponded to Acinetobacter, with 29 mapping specifically to A. baumannii. Other observed genera included Bordetella, Citrobacter, Escherichia, and Pseudomonas. Single-copy and multi-copy orthologs were identified across Acinetobacter MAGs and publicly available isolate genomes derived from military and civilian sources. Both MAG and military isolate genomes were annotated with antimicrobial resistance data, and MAG genomes were statistically comparable to genomes obtained from isolates. Our results highlight the potential of de novo metagenome assembly for enabling high-resolution characterization directly from clinical specimens, thereby improving diagnostic precision, guiding antimicrobial stewardship, and enhancing understanding of pathogen evolution across diverse healthcare and battlefield environments.

Acinetobacter baumannii↗

Elucidating the Ultrafast Dynamics of Photoinduced Charge Separation in Metalloporphyrin-Fullerene Dyads Across the Electromagnetic Spectrum

Metalloporphyrins are prominent building blocks in the synthetic toolbox of advanced photodriven molecular devices. When the central ion is paramagnetic, the relaxation pathways within the manifold of excited states are highly intricate so that unravelling the intramolecular energy and electron transfer processes is usually a very complex task. This fact is critically hampering the development of applications based on the enhanced coupling offered by the electronic exchange interaction. In this work, the dynamics of charge separation in a copper porphyrin-fullerene are studied with several complementary spectroscopic tools across the electromagnetic spectrum (from near infra-red to X-ray wavelengths), each of them providing specific diagnostics. Correlating the various rates clearly demonstrates that the lifetime of the photoinduced charge-separated state exceeds by about 10 fold that of the isolated photoexcited CuII porphyrin. As revealed by the spectral modifications in the XANES region, this stabilization is accompanied by a transient change in covalency around the CuII center, which is induced by an enhanced interaction with the C60 moiety. This experimental finding is further confirmed by state-of-the art calculations using DFT and TD-DFT including dispersion effects that explain the electrostatic and structural origins of this interaction, as the CuIIP cation becomes ruffled and approaches closer to the fullerene in the charge-separated state. From a methodological point of view, these results exemplify the potential of multielectron excitation features in transient X-ray spectra as future diagnostics of sub-femtosecond electronic dynamics. From a practical point of view, this work is paving the way for elucidating out-of-equilibrium electron transfer events coupled to magnetic interaction processes on their intrinsic time-scales.

Zhang, J.↗

Experimental Investigation and Validation of Neutral Beam Current Drive for ITER Through ITPA Joint Experiments

Joint experiments investigating the off-axis neutral beam current drive (NBCD) capability to be utilized for advanced operation scenario development in ITER were conducted in four tokamaks (ASDEX Upgrade (AUG), DIII-D, JT-60U and MAST) through the international tokamak physics activity (ITPA). The following results were obtained in the joint experiments, where the toroidal field, B(t), covered 0.4-3.7 T, the plasma current, I(p), 0.5-1.2 MA, and the beam energy, E(b), 65-350 keV. A current profile broadened by off-axis NBCD was observed in MAST. In DIII-D and JT-60U, the NB driven current profile has been evaluated using motional Stark effect diagnostics and good agreement between the measured and calculated NB driven current profile was observed. In AUG (at low delta similar to 0.2) and DIII-D, introduction of a fast-ion diffusion coefficient of D(b) similar to 0.3-0.5 m(2) s(-1) in the calculation gave better agreement at high heating power (5 MW and 7.2 MW, respectively), suggesting anomalous transport of fast ions by turbulence. It was found through these ITPA joint experiments that NBCD related physics quantities reasonably agree with calculations (with D(b) = 0-0.5 m(2) s(-1)) in all devices when there is no magnetohydrodynamic (MHD) activity except ELMs. Proximity of measured off-axis beam driven current to the corresponding calculation with D(b) = 0 has been discussed for ITER in terms of a theoretically predicted scaling of fast-ion diffusion that depends on E(b)/T(e) for electrostatic turbulence or beta(t) for electromagnetic turbulence.

Suzuki, T↗

Nevada National Security Site: Site-Directed Research and Development (SDRD) Fiscal Year 2015 Annual Report

This report presents results of multiple research projects, new and ongoing, funded under the Site-Directed Research and Development Program for the Nevada National Security Site during federal fiscal year 2015. The Site's legacy capabilities in remote sensing combined with new paradigms for emergency response and consequence management help drive the need to develop advanced aerial sensor platforms. Likewise, dynamic materials science is a critical area of scientific research for which basic physics issues are still unresolved. New methods of characterizing materials in extreme states are vitally needed, and these efforts are paving the way with new knowledge. Projects selected in FY 2015 for the Exploratory Research portfolio exhibit a strong balance of NNSS mission relevance. Geoscience, seismology, and techniques for detecting underground nuclear events are still essential focus areas. Many of the project reports in the second major section of this annual report are ongoing continuations in multi-year lifecycles. Diagnostic techniques for stockpile and nuclear security science figured prominently as well, with a few key efforts coming to fruition, such as phase transition detection. In other areas, modeling efforts toward better understanding plasma focus physics has also started to pay dividends for major program needs.

42 ENGINEERING↗

Automated Cardiovascular Pathology Assessment using Semantic Segmentation and Ensemble Learning

Cardiac magnetic resonance imaging provides high spatial resolution, enabling improved extraction of important functional and morphological features for cardiovascular disease staging. Segmentation of ventricular cavities and myocardium in cardiac cine sequencing provides a basis to quantify cardiac measures such as ejection fraction. A method is presented that curtails the expense and observer bias of manual cardiac evaluation by combining semantic segmentation and disease classification into a fully automatic processing pipeline. The initial processing element consists of a robust dilated convolutional neural network architecture for voxel-wise segmentation of the myocardium and ventricular cavities. The resulting comprehensive volumetric feature matrix captures diagnostic clinical procedure data and is utilized by the final processing element to model a cardiac pathology classifier. Our approach evaluated anonymized cardiac images from a training data set of 100 patients (4 pathology groups, 1 healthy group, 20 patients per group) examined at the University Hospital of Dijon. The top average Dice index scores achieved were 0.940, 0.886, 0.849 for structure segmentation of the left ventricle (LV), myocardium and right ventricle (RV) respectively. A 5-ary pathology classification accuracy of 90% was recorded on an independent test set using the trained model. Performance results demonstrate potential for advanced machine learning methods to deliver accurate, efficient and reproducible cardiac pathological assessment.

Semantic Segmentation↗

Neural networks for modeling and control of particle accelerators

Charged particle accelerators support a wide variety of scientific, industrial, and medical applications. They range in scale and complexity from systems with just a few components for beam acceleration and manipulation, to large scientific user facilities that span many kilometers and have hundreds-to-thousands of individually-controllable components. Specific operational requirements must be met by adjusting the many controllable variables of the accelerator. Meeting these requirements can be challenging, both in terms of the ability to achieve specific beam quality metrics in a reliable fashion and in terms of the time needed to set up and maintain the optimal operating conditions. One avenue toward addressing this challenge is to incorporate techniques from the fields of machine learning (ML) and artificial intelligence (AI) into the way particle accelerators are modeled and controlled. While many promising approaches within AI/ML could be used for particle accelerators, this dissertation focuses on approaches based on neural networks. Neural networks are particularly well-suited to modeling, control, and diagnostic analysis of nonlinear systems, as well as systems with large parameter spaces. They are also very appealing for their ability to process high-dimensional data types, such as images and time series (both of which are ubiquitous in particle accelerators). In this work, key studies that demonstrated the potential utility of modern neural network-based approaches to modeling and control of particle accelerators are presented. The context for this work is important: at the start of this work in 2012, there was little interest in AI/ML in the particle accelerator community, and many of the advances in neural networks and deep learning that enabled its present success had not yet been made at that time. As such, this work was both an exploration of possible application areas and a generator of proof-of-concept demonstrations in these areas.

43 PARTICLE ACCELERATORS↗

Advanced CCD imager technology for use from 1 to 10,000 A

A low-noise, high-sensitivity charge-coupled-device (CCD) technology for imaging applications extending from the soft X-ray (1 A) to the near-infrared (10,000 A) regimes was developed together with a fabrication technology for making back-illuminated versions of these devices with quantum efficiencies as high as 90 percent from 5000 to 7000 A. The efforts have focused on two devices, a 64 x 64 pixel back-illuminated imager with two output ports that operates at 2000 frames per second with 23 electrons read noise, and a larger device, with 420 x 420 pixel format, designed for lower frame rates with noise as low as 1.5 electrons and used at visible, UV, and X-ray wavelengths. Applications to plasma diagnostics include Thomson scattering and high-frame-rate imaging in the visible, as well as X-ray imaging and bolometry.

Twichell, J. C.↗

Dynamic high energy density plasma environments at the National Ignition Facility for nuclear science research

We present the generation of dynamic high energy density plasmas in the pico- to nano-second time domain at high-energy laser facilities affords unprecedented nuclear science research possibilities. At the National Ignition Facility (NIF), the primary goal of inertial confinement fusion research has led to the synergistic development of a unique high brightness neutron source, sophisticated nuclear diagnostic instrumentation, and versatile experimental platforms. These novel experimental capabilities provide a new path to investigate nuclear processes and structural effects in the time, mass and energy density domains relevant to astrophysical phenomena in a unique terrestrial environment. Some immediate applications include neutron capture cross-section evaluation, fission fragment production, and ion energy loss measurement in electron-degenerate plasmas. More generally, the NIF conditions provide a singular environment to investigate the interplay of atomic and nuclear processes such as plasma screening effects upon thermonuclear reactivity. Lastly, achieving enhanced understanding of many of these effects will also significantly advance fusion energy research and challenge existing theoretical models.

42 ENGINEERING↗

One-Dimensional Spontaneous Raman Measurements of Temperature Made in a Gas Turbine Combustor

The NASA Glenn Research Center is working with the aeronautics industry to develop highly fuel-efficient and environmentally friendly gas turbine combustor technology. This effort includes testing new hardware designs at conditions that simulate the high-temperature, high-pressure environment expected in the next-generation of high-performance engines. Glenn has the only facilities in which such tests can be performed. One aspect of these tests is the use of nonintrusive optical and laser diagnostics to measure combustion species concentration, fuel/air ratio, fuel drop size, and velocity, and to visualize the fuel injector spray pattern and some combustion species distributions. These data not only help designers to determine the efficacy of specific designs, but provide a database for computer modelers and enhance our understanding of the many processes that take place within a combustor. Until recently, we lacked one critical capability, the ability to measure temperature. This article summarizes our latest developments in that area. Recently, we demonstrated the first-ever use of spontaneous Raman scattering to measure combustion temperatures within the Advanced Subsonics Combustion Rig (ASCR) sector rig. We also established the highest rig pressure ever achieved for a continuous-flow combustor facility, 54.4 bar. The ASCR facility can provide operating pressures from 1 to 60 bar (60 atm). This photograph shows the Raman system setup next to the ASCR rig. The test was performed using a NASA-concept fuel injector and Jet-A fuel over a range of air inlet temperatures, pressures, and fuel/air ratios.

Hicks, Yolanda R.↗

Modeling Multi-Bunch X-band Photoinjector Challenges

An X-band test station is being developed at LLNL to investigate accelerator optimization for future upgrades to mono-energetic gamma-ray technology at LLNL. The test station will consist of a 5.5 cell X-band rf photoinjector, single accelerator section, and beam diagnostics. Of critical import to the functioning of the LLNL X-band system with multiple electron bunches is the performance of the photoinjector. In depth modeling of the Mark 1 LLNL/SLAC X-band rf photoinjector performance will be presented addressing important challenges that must be addressed in order to fabricate a multi-bunch Mark 2 photoinjector. Emittance performance is evaluated under different nominal electron bunch parameters using electrostatic codes such as PARMELA. Wake potential is analyzed using electromagnetic time domain simulations using the ACE3P code T3P. Plans for multi-bunch experiments and implementation of photoinjector advances for the Mark 2 design will also be discussed.

42 ENGINEERING↗

Lost alpha Faraday cup foil noise characterization during Joint European Torus plasma post-processing analysis

Capacitive plasma pickup is a well-known and difficult problem for plasma-facing edge diagnostics. This problem must be addressed to ensure an accurate and robust interpretation of the real signal measurements vs noise. The Faraday cup fast ion loss detector array of the Joint European Torus (JET) is particularly prone to this issue and can be used as a testbed to prototype solutions. The issue of separation and distinction between warranted fast ion signal and electromagnetic plasma noise has traditionally been solved with hardware modifications, but a more versatile post-processing approach is of great interest. This work presents post-processing techniques to characterize the signal noise. While hardware changes and advancements may be limited, the combination with post-processing procedures allows for more rapid and robust analysis of measurements. The characterization of plasma pickup noise is examined for alpha losses in a discharge from JET’s tritium campaign. In addition to highlighting the post-processing methodology, the spatial sensitivity of the detector array is also examined, which presents significant advantages for the physical interpretation of fast ion losses.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

FLASSH 1.0: Thermal scattering law evaluation and cross section generation for reactor physics applications

The Full Law Analysis Scattering System Hub (FLASSH) is a modern, advanced code which evaluates the thermal scattering law (TSL) along with accompanying cross sections. FLASSH features generalized methods which accommodate any material structure. Historical approximations including the incoherent and cubic approximations have been removed. Instead, the latest release of FLASSH features advanced physics options including distinct corrections (1-phonon contributions) and non-cubic formulations. The non-cubic elastic and inelastic contributions are necessary to accurately evaluate 1-phonon contributions. Both non-cubic and 1-phonon calculations require high-density sampling of the various scattering directions. Optimization and parallelization of these routines were therefore necessary to produce results in a reasonable timeframe. With these notable improvements to the generalized TSL, FLASSH 1.0 meets benchmark requirements, demonstrating noticeable agreement with experiment for both TSLs and the resulting integrated cross sections. Additional features including a graphical user interface (GUI), plotting diagnostics, and formatted output options including ACE files allow users to complete a TSL evaluation with minimal input and maximum flexibility. The user GUI creates input files for FLASSH, reducing user error and also providing built-in error checks. Autofill options and suggested input values help make TSL evaluation accessible to novice users. The FLASSH code is compiled to run on both Windows and Linux platforms with automatic parallelization. (authors)

22 GENERAL STUDIES OF NUCLEAR REACTORS↗