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DOE OSTI2014

Primordial power spectrum from Planck

Using modified Richardson-Lucy algorithm we reconstruct the primordial power spectrum (PPS) from Planck Cosmic Microwave Background (CMB) temperature anisotropy data. In our analysis we use different combinations of angular power spectra from Planck to reconstruct the shape of the primordial power spectrum and locate possible features. Performing an extensive error analysis we found the dip near ℓ ∼ 750–850 represents the most prominent feature in the data. Feature near ℓ ∼ 1800–2000 is detectable with high confidence only in 217 GHz spectrum and is apparently consequence of a small systematic as described in the revised Planck 2013 papers. Fixing the background cosmological parameters and the foreground nuisance parameters to their best fit baseline values, we report that the best fit power law primordial power spectrum is consistent with the reconstructed form of the PPS at 2σ C.L. of the estimated errors (apart from the local features mentioned above). As a consistency test, we found the reconstructed primordial power spectrum from Planck temperature data can also substantially improve the fit to WMAP-9 angular power spectrum data (with respect to power-law form of the PPS) allowing an overall amplitude shift of ∼ 2.5%. In this context low-ℓ and 100 GHz spectrum from Planck which have proper overlap in the multipole range with WMAP data found to be completely consistent with WMAP-9 (allowing amplitude shift). As another important result of our analysis we do report the evidence of gravitational lensing through the reconstruction analysis. Finally we present two smooth form of the PPS containing only the important features. These smooth forms of PPS can provide significant improvements in fitting the data (with respect to the power law PPS) and can be helpful to give hints for inflationary model building.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2015

Cross-correlating 21cm intensity maps with Lyman Break Galaxies in the post-reionization era

We investigate the cross-correlation between the spatial distribution of Lyman Break Galaxies (LBGs) and the 21cm intensity mapping signal at z∼[3–5]. At these redshifts, galactic feedback is supposed to only marginally affect the matter power spectrum, and the neutral hydrogen distribution is independently constrained by quasar spectra. Using a high resolution N-body simulation, populated with neutral hydrogen a posteriori, we forecast for the expected LBG-21cm cross-spectrum and its error for a 21cm field observed by the Square Kilometre Array (SKA1-LOW and SKA1-MID), combined with a spectroscopic LBG survey with the same volume. The cross power can be detected with a signal-to-noise ratio (SNR) up to ∼10 times higher (and down to ∼ 4 times smaller scales) than the 21cm auto-spectrum for this set-up, with the SNR depending only very weakly on redshift and the LBG population. We also show that while both the 21cm auto- and LBG-21cm cross-spectra can be reliably recovered after the cleaning of smooth-spectrum foreground contamination, only the cross-power is robust to problematic non-smooth foregrounds like polarized synchrotron emission.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2015

Discretising the velocity distribution for directional dark matter experiments

Dark matter (DM) direct detection experiments which are directionally-sensitive may be the only method of probing the full velocity distribution function (VDF) of the Galactic DM halo. We present an angular basis for the DM VDF which can be used to parametrise the distribution in order to mitigate astrophysical uncertainties in future directional experiments and extract information about the DM halo. This basis consists of discretising the VDF in a series of angular bins, with the VDF being only a function of the DM speed v within each bin. In contrast to other methods, such as spherical harmonic expansions, the use of this basis allows us to guarantee that the resulting VDF is everywhere positive and therefore physical. We present a recipe for calculating the event rates corresponding to the discrete VDF for an arbitrary number of angular bins N and investigate the discretisation error which is introduced in this way. For smooth, Standard Halo Model-like distribution functions, only N=3 angular bins are required to achieve an accuracy of around 10–30% in the number of events in each bin. Shortly after confirmation of the DM origin of the signal with around 50 events, this accuracy should be sufficient to allow the discretised velocity distribution to be employed reliably. For more extreme VDFs (such as streams), the discretisation error is typically much larger, but can be improved with increasing N. This method paves the way towards an astrophysics-independent analysis framework for the directional detection of dark matter.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2015

Tidal alignment of galaxies

We develop an analytic model for galaxy intrinsic alignments (IA) based on the theory of tidal alignment. We calculate all relevant nonlinear corrections at one-loop order, including effects from nonlinear density evolution, galaxy biasing, and source density weighting. Contributions from density weighting are found to be particularly important and lead to bias dependence of the IA amplitude, even on large scales. This effect may be responsible for much of the luminosity dependence in IA observations. The increase in IA amplitude for more highly biased galaxies reflects their locations in regions with large tidal fields. We also consider the impact of smoothing the tidal field on halo scales. We compare the performance of this consistent nonlinear model in describing the observed alignment of luminous red galaxies with the linear model as well as the frequently used 'nonlinear alignment model,' finding a significant improvement on small and intermediate scales. We also show that the cross-correlation between density and IA (the 'GI' term) can be effectively separated into source alignment and source clustering, and we accurately model the observed alignment down to the one-halo regime using the tidal field from the fully nonlinear halo-matter cross correlation. Inside the one-halo regime, the average alignment of galaxies with density tracers no longer follows the tidal alignment prediction, likely reflecting nonlinear processes that must be considered when modeling IA on these scales. Finally, we discuss tidal alignment in the context of cosmic shear measurements.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2016

The binned bispectrum estimator: template-based and non-parametric CMB non-Gaussianity searches

We describe the details of the binned bispectrum estimator as used for the official 2013 and 2015 analyses of the temperature and polarization CMB maps from the ESA Planck satellite. The defining aspect of this estimator is the determination of a map bispectrum (3-point correlation function) that has been binned in harmonic space. For a parametric determination of the non-Gaussianity in the map (the so-called f NL parameters), one takes the inner product of this binned bispectrum with theoretically motivated templates. However, as a complementary approach one can also smooth the binned bispectrum using a variable smoothing scale in order to suppress noise and make coherent features stand out above the noise. This allows one to look in a model-independent way for any statistically significant bispectral signal. This approach is useful for characterizing the bispectral shape of the galactic foreground emission, for which a theoretical prediction of the bispectral anisotropy is lacking, and for detecting a serendipitous primordial signal, for which a theoretical template has not yet been put forth. Both the template-based and the non-parametric approaches are described in this paper.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2016

Red, Straight, no bends: primordial power spectrum reconstruction from CMB and large-scale structure

We present a minimally parametric, model independent reconstruction of the shape of the primordial power spectrum. Our smoothing spline technique is well-suited to search for smooth features such as deviations from scale invariance, and deviations from a power law such as running of the spectral index or small-scale power suppression. We use a comprehensive set of the state-of the art cosmological data: Planck observations of the temperature and polarisation anisotropies of the cosmic microwave background, WiggleZ and Sloan Digital Sky Survey Data Release 7 galaxy power spectra and the Canada-France-Hawaii Lensing Survey correlation function. This reconstruction strongly supports the evidence for a power law primordial power spectrum with a red tilt and disfavours deviations from a power law power spectrum including small-scale power suppression such as that induced by significantly massive neutrinos. This offers a powerful confirmation of the inflationary paradigm, justifying the adoption of the inflationary prior in cosmological analyses.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2016

Testing DARKexp against energy and density distributions of Millennium-II halos

We test the DARKexp model for relaxed, self-gravitating, collisionless systems against equilibrium dark matter halos from the Millennium-II simulation. While limited tests of DARKexp against simulations and observations have been carried out elsewhere, this is the first time the testing is done with a large sample of simulated halos spanning a factor of ∼ 50 in mass, and using independent fits to density and energy distributions. We show that DARKexp, a one shape parameter family, provides very good fits to the shapes of density profiles, ρ( r ), and differential energy distributions, N ( E ), of individual simulated halos. The best fit shape parameter φ{sub 0} obtained from the two types of fits are correlated, though with scatter. Our most important conclusions come from ρ( r ) and N ( E ) that have been averaged over many halos. These show that the bulk of the deviations between DARKexp and individual Millennium-II halos come from halo-to-halo fluctuations, likely driven by substructure, and other density perturbations. The average ρ( r ) and N ( E ) are quite smooth and follow DARKexp very closely. The only deviation that remains after averaging is small, and located at most bound energies for N ( E ) and smallest radii for ρ( r ). Since the deviation is confined to 3–4 smoothing lengths, and is larger for low mass halos, it is likely due to numerical resolution effects.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2016

Effect of lensing non-Gaussianity on the CMB power spectra

Observed CMB anisotropies are lensed, and the lensed power spectra can be calculated accurately assuming the lensing deflections are Gaussian. However, the lensing deflections are actually slightly non-Gaussian due to both non-linear large-scale structure growth and post-Born corrections. We calculate the leading correction to the lensed CMB power spectra from the non-Gaussianity, which is determined by the lensing bispectrum. Assuming no primordial non-Gaussianity, the lowest-order result gives ∼ 0.3% corrections to the BB and EE polarization spectra on small-scales. However we show that the effect on EE is reduced by about a factor of two by higher-order Gaussian lensing smoothing, rendering the total effect safely negligible for the foreseeable future. We give a simple analytic model for the signal expected from skewness of the large-scale lensing field; the effect is similar to a net demagnification and hence a small change in acoustic scale (and therefore out of phase with the dominant lensing smoothing that predominantly affects the peaks and troughs of the power spectrum).

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Ultralocality and slow contraction

Abstract We study the detailed process by which slow contraction smooths and flattens the universe using an improved numerical relativity code that accepts initial conditions with non-perturbativedeviations from homogeneity and isotropy along two independent spatial directions.Contrary to common descriptions of the early universe,we find that the geometry first rapidly converges to an inhomogeneous, spatially-curved and anisotropic ultralocal state in which all spatialgradient contributions to the equations of motion decrease as an exponential in time to negligible values. This is followed by a second stage in which the geometry converges to a homogeneous, spatially flat and isotropic spacetime. In particular, the decay appears to follow the same history whether the entire spacetime or only parts of it are smoothed by the end of slow contraction.

Astronomy & Astrophysics↗
DOE OSTI2022

The Electromagnetic Characteristics of the Tianlai Cylindrical Pathfinder Array

A great challenge for 21 cm intensity mapping experiments is the strong foreground radiation which is orders of magnitude brighter than the 21 cm signal. Removal of the foreground takes advantage of the fact that its frequency spectrum is smooth while the redshifted 21 cm signal spectrum is stochastic. However, a complication is the non-smoothness of the instrument response. This paper describes the electromagnetic simulation of the Tianlai cylinder array, a pathfinder for 21 cm intensity mapping experiments. Due to the vast scales involved, a direct simulation requires a large amount of computing resources. We have made the simulation practical by using a combination of methods: first simulate a single feed, then an array of feed units, finally with the feed array and a cylindrical reflector together, obtain the response for a single cylinder. We studied its radiation pattern, bandpass response and the effects of mutual coupling between feed units, and compared the results with observation. Many features seen in the measurement result are reproduced well in the simulation, especially the oscillatory features which are associated with the standing waves on the reflector. The mutual coupling between feed units is quantified with S-parameters, which decrease as the distance between the two feeds increases. Based on the simulated S-parameters, we estimate the correlated noise which has been seen in the visibility data, and the results show very good agreement with the data in both magnitude and frequency structures. These results provide useful insights on the problem of 21 cm signal extraction for real instruments.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2014

VOYAGER 1 NEAR THE HELIOPAUSE

Recent observations from the Voyager 1 spacecraft show that it is sampling the local interstellar medium (LISM). This is quite surprising because no realistic, steady-state model of the solar wind (SW) interaction with the LISM gives an inner heliosheath width as narrow as ∼30 AU. This includes models that assume a strong redistribution of the ion energy to the tails in the pickup ion distribution function. We show that the heliopause (HP), which separates the SW from the LISM, is not a smooth tangential discontinuity, but rather a surface subject to Rayleigh-Taylor-type instabilities which can result in LISM material penetration deep inside the SW. We also show that the HP flanks are always subject to a Kelvin-Helmholtz instability. The instabilities are considerably suppressed near the HP nose by the heliospheric magnetic field in steady-state models, but reveal themselves in the presence of solar cycle effects. We argue that Voyager 1 may be in one such instability region and is therefore observing plasma densities much higher than those in the pristine SW. These results may explain the early penetration of Voyager 1 into the LISM. They also show that there is a possibility that the spacecraft may start sampling the SW again before it finally leaves the heliosphere.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2026

Machine learning method for enforcing variable independence in background estimation with LHC data: ABCDisCoTEC

A novel solution is presented for the problem of estimating the backgrounds of a signal search using observed data while simultaneously maximizing the sensitivity of the search to the signal. The 'ABCD method' provides a reliable framework for background estimation by partitioning events into one signal-enhanced region (A) and three background-enhanced control regions (B, C, and D) via two smoothly varying, statistically independent variables. In practice, even slight correlations between the two variables can significantly undermine the method's performance. Thus, choosing appropriate variables by hand can present a formidable challenge, especially when background and signal differ only subtly. To address this issue, the ABCD with distance correlation (ABCDisCo) method was developed to construct two learned variables via a neural network trained to provide strong signal-background discrimination with small values of the distance correlation (DisCo) measure between the two learned variables. However, relying solely on minimizing the DisCo can result in learned variables that may not have distributions of background events that are smoothly varying and localized at extreme values, as necessary for the validity of the background estimation. The ABCDisCo training enhanced with closure (ABCDisCoTEC) method is introduced to solve this issue by directly minimizing the nonclosure, expressed as a dedicated differentiable loss term. This extended method is applied to a data set of proton-proton collisions at a center-of-mass energy of 13 TeV recorded by the CMS detector at the CERN Large Hadron Collider. Additionally, given the complexity of the minimization problem with constraints on multiple loss terms, the modified differential method of multipliers is applied and shown to greatly improve the stability and robustness of the ABCDisCoTEC method, compared to grid search hyperparameter optimization procedures.

Hayrapetyan, Aram [Yerevan Phys. Inst.]↗
DOE OSTI2022

End-to-end learning of multiple sequence alignments with differentiable Smith–Waterman

Abstract Motivation Multiple sequence alignments (MSAs) of homologous sequences contain information on structural and functional constraints and their evolutionary histories. Despite their importance for many downstream tasks, such as structure prediction, MSA generation is often treated as a separate pre-processing step, without any guidance from the application it will be used for. Results Here, we implement a smooth and differentiable version of the Smith–Waterman pairwise alignment algorithm that enables jointly learning an MSA and a downstream machine learning system in an end-to-end fashion. To demonstrate its utility, we introduce SMURF (Smooth Markov Unaligned Random Field), a new method that jointly learns an alignment and the parameters of a Markov Random Field for unsupervised contact prediction. We find that SMURF learns MSAs that mildly improve contact prediction on a diverse set of protein and RNA families. As a proof of concept, we demonstrate that by connecting our differentiable alignment module to AlphaFold2 and maximizing predicted confidence, we can learn MSAs that improve structure predictions over the initial MSAs. Interestingly, the alignments that improve AlphaFold predictions are self-inconsistent and can be viewed as adversarial. This work highlights the potential of differentiable dynamic programming to improve neural network pipelines that rely on an alignment and the potential dangers of optimizing predictions of protein sequences with methods that are not fully understood. Availability and implementation Our code and examples are available at: https://github.com/spetti/SMURF. Supplementary information Supplementary data are available at Bioinformatics online.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Inexact Newton-CG algorithms with complexity guarantees

Abstract We consider variants of a recently developed Newton-CG algorithm for nonconvex problems (Royer, C. W. & Wright, S. J. (2018) Complexity analysis of second-order line-search algorithms for smooth nonconvex optimization. SIAM J. Optim., 28, 1448–1477) in which inexact estimates of the gradient and the Hessian information are used for various steps. Under certain conditions on the inexactness measures, we derive iteration complexity bounds for achieving $\epsilon $-approximate second-order optimality that match best-known lower bounds. Our inexactness condition on the gradient is adaptive, allowing for crude accuracy in regions with large gradients. We describe two variants of our approach, one in which the step size along the computed search direction is chosen adaptively, and another in which the step size is pre-defined. To obtain second-order optimality, our algorithms will make use of a negative curvature direction on some steps. These directions can be obtained, with high probability, using the randomized Lanczos algorithm. In this sense, all of our results hold with high probability over the run of the algorithm. We evaluate the performance of our proposed algorithms empirically on several machine learning models. Our approach is a first attempt to introduce inexact Hessian and/or gradient information into the Newton-CG algorithm of Royer & Wright (2018, Complexity analysis of second-order line-search algorithms for smooth nonconvex optimization. SIAM J. Optim., 28, 1448–1477).

Mathematics↗
DOE OSTI2018

An inexact regularized Newton framework with a worst-case iteration complexity of $ {\mathscr O}(\varepsilon^{-3/2}) $ for nonconvex optimization

Abstract An algorithm for solving smooth nonconvex optimization problems is proposed that, in the worst-case, takes ${\mathscr O}(\varepsilon ^{-3/2})$ iterations to drive the norm of the gradient of the objective function below a prescribed positive real number $\varepsilon $ and can take ${\mathscr O}(\varepsilon ^{-3})$ iterations to drive the leftmost eigenvalue of the Hessian of the objective above $-\varepsilon $. The proposed algorithm is a general framework that covers a wide range of techniques including quadratically and cubically regularized Newton methods, such as the Adaptive Regularization using Cubics (arc) method and the recently proposed Trust-Region Algorithm with Contractions and Expansions (trace). The generality of our method is achieved through the introduction of generic conditions that each trial step is required to satisfy, which in particular allows for inexact regularized Newton steps to be used. These conditions center around a new subproblem that can be approximately solved to obtain trial steps that satisfy the conditions. A new instance of the framework, distinct from arc and trace, is described that may be viewed as a hybrid between quadratically and cubically regularized Newton methods. Numerical results demonstrate that our hybrid algorithm outperforms a cubically regularized Newton method.

Mathematics↗
DOE OSTI2019

A Leray regularized ensemble-proper orthogonal decomposition method for parameterized convection-dominated flows

Abstract Partial differential equations (PDEs) are often dependent on input quantities that are uncertain. To quantify this uncertainty PDEs must be solved over a large ensemble of parameters. Even for a single realization this can be a computationally intensive process. In the case of flows governed by the Navier–Stokes equations, an efficient method has been devised for computing an ensemble of solutions. To further reduce the computational cost of this method, an ensemble-proper orthogonal decomposition (POD) method was recently proposed. The main contribution of this work is the introduction of POD spatial filtering for ensemble-POD methods. The POD spatial filter makes possible the construction of the Leray ensemble-POD model, which is a regularized-reduced order model for the numerical simulation of convection-dominated flows of moderate Reynolds number. The Leray ensemble-POD model employs the POD spatial filter to smooth (regularize) the convection term in the Navier–Stokes equations, and diminishes the numerical inaccuracies produced by the ensemble-POD method in the numerical simulation of convection-dominated flows. Specifically, for the numerical simulation of a convection-dominated two-dimensional flow between two offset cylinders, we show that the Leray ensemble-POD method better reflects the dynamics of the benchmark results than the ensemble-POD scheme. The second contribution of this work is a new numerical discretization of the variable viscosity ensemble algorithm in which the average viscosity is replaced with the maximum viscosity. It is shown that this new numerical discretization is significantly more stable than those in current use. Furthermore, error estimates for the novel Leray ensemble-POD algorithm with this new numerical discretization are also proven.

Mathematics↗
DOE OSTI2021

Quantifying the poor purity and completeness of morphological samples selected by galaxy colour

The galaxy population is strongly bimodal in both colour and morphology, and the two measures correlate strongly, with most blue galaxies being late-types (spirals) and most early-types, typically ellipticals, being red. This observation has led to the use of colour as a convenient selection criterion to make samples that are then labelled by morphology. Such use of colour as a proxy for morphology results in necessarily impure and incomplete samples. In this paper, we make use of the morphological labels produced by Galaxy Zoo to measure how incomplete and impure such samples are, considering optical (ugriz), near-ultraviolet (NUV), and near-infrared (NIR; JHK) bands. The best single colour optical selection is found using a threshold of g - r = 0.742, but this still results in a sample where only 56 per cent of red galaxies are smooth and 56 per cent of smooth galaxies are red. Use of the NUV gives some improvement over purely optical bands, particularly for late-types, but still results in low purity/completeness for early-types. No significant improvement is found by adding NIR bands. With any two bands, including NUV, a sample of early-types with greater than two-thirds purity cannot be constructed. In conclusion, advances in quantitative galaxy morphologies have made colour–morphology proxy selections largely unnecessary going forward; where such assumptions are still required, we recommend studies carefully consider the implications of sample incompleteness/impurity.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Iterative reconstruction excursions for Baryon Acoustic Oscillations and beyond

ABSTRACT The density field reconstruction technique has been widely used for recovering the baryon acoustic oscillation (BAO) feature in galaxy surveys that has been degraded due to non-linearities. Recent studies advocated adopting iterative steps to improve the recovery much beyond that of the standard technique. In this paper, we investigate the performance of a few selected iterative reconstruction techniques focusing on the BAO and the broad-band shape of the two-point clustering. We include redshift-space distortions, halo bias, and shot noise and inspect the components of the reconstructed field in Fourier space and in configuration space using both density field-based reconstruction and displacement field-based reconstruction. We find that the displacement field reconstruction becomes quickly challenging in the presence of non-negligible shot noise and therefore present surrogate methods that can be practically applied to a much more sparse field such as galaxies. For a galaxy field, implementing a debiasing step to remove the Lagrangian bias appears crucial for the displacement field reconstruction. We show that the iterative reconstruction does not substantially improve the BAO feature beyond an aggressively optimized standard reconstruction with a small smoothing kernel. However, we find taking iterative steps allows us to use a small smoothing kernel more ‘stably’, i.e. without causing a substantial deviation from the linear power spectrum on large scales. In one specific example we studied, we find that a deviation of 13 per cent in $P(k\sim 0.1\, h{\rm \,\,Mpc^{-1}})$ with an aggressive standard reconstruction can reduce to 3–4 per cent with iterative steps.

79 ASTRONOMY AND ASTROPHYSICS↗