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At least 1,567 records · Page 87

Determining Partial Atomic Charges for Liquid Water: Assessing Electronic Structure and Charge Models

Partial atomic charges provide an intuitive and efficient way to describe the charge distribution and the resulting intermolecular electrostatic interactions in liquid water. Many charge models exist and it is unclear which model provides the best assignment of partial atomic charges in response to the local molecular environment. In this work, we systematically scrutinize various electronic structure methods and charge models (Mulliken, natural population analysis, CHelpG, RESP, Hirshfeld, Iterative Hirshfeld, and Bader) by evaluating their performance in predicting the dipole moments of isolated water, water clusters, and liquid water as well as charge transfer in the water dimer and liquid water. Although none of the seven charge models is capable of fully capturing the dipole moment increase from isolated water (1.85 D) to liquid water (about 2.9 D), the Iterative Hirshfeld method performs best for liquid water, reproducing its experimental average molecular dipole moment, yielding a reasonable amount of intermolecular charge transfer, and showing modest sensitivity to the local water environment. The performance of the charge model is dependent on the choice of the density functional and the quantum treatment of the environment. The computed molecular dipole moment of water generally increases with the percentage of the exact Hartree–Fock exchange in the functional, whereas the amount of charge transfer between molecules decreases. For liquid water, including two full solvation shells of surrounding water molecules (within about 5.5 Å of the central water) in the quantum chemical calculation converges the charges of the central water molecule. Furthermore, our final pragmatic quantum chemical charge-assigning protocol for liquid water is the Iterative Hirshfeld method with M06-HF/aug-cc-pVDZ and a quantum region cutoff radius of 5.5 Å.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Bayesian Model Averaging for Ensemble-Based Estimates of Solvation Free Energies

This paper applies the Bayesian Model Averaging (BMA) statistical ensemble technique to estimate small molecule solvation free energies. There is a wide range methods for predicting solvation free energies, ranging from empirical statistical models to {\it ab initio} quantum mechanical approaches. Each of these methods are based on a set of conceptual assumptions that can affect a method's predictive accuracy and transferability. Using an iterative statistical process, we have selected and combined solvation energy estimates using an ensemble of 17 diverse methods from the SAMPL4 blind prediction study to form a single, aggregated solvation energy estimate. The ensemble design process evaluates the statistical information in each individual method as well as the performance of the aggregate estimate obtained from the ensemble as a whole. Methods that possess minimal or redundant information are pruned from the ensemble and the evaluation process repeats until aggregate predictive performance can no longer be improved. We show that this process results in a final aggregate estimate that outperforms all individual methods by reducing estimate errors by as much as 91% to 1.2 kcal/mol accuracy. We also compare our iterative refinement approach to other statistical ensemble approaches and demonstrate that this iterative process reduces estimate errors by as much as 61%. This work provides a new approach for accurate solvation free energy prediction and lays the foundation for future work on aggregate models that can balance computational cost with predictive accuracy.

solvation, Bayesian model averaging, Electrostatic↗

Noniterative Multireference Coupled Cluster Methods on Heterogeneous CPU-GPU Systems

A novel parallel algorithm for non-iterative multireference coupled cluster (MRCC) theories, which merges recently introduced reference-level parallelism (RLP) [K. Bhaskaran-Nair, J.Brabec, E. Aprà, H.J.J. van Dam, J. Pittner, K. Kowalski, J. Chem. Phys. 137, 094112 (2012)] with the possibility of accelerating numerical calculations using graphics processing unit (GPU) is presented. We discuss the performance of this algorithm on the example of the MRCCSD(T) method (iterative singles and doubles and perturbative triples), where the corrections due to triples are added to the diagonal elements of the MRCCSD (iterative singles and doubles) effective Hamiltonian matrix. The performance of the combined RLP/GPU algorithm is illustrated on the example of the Brillouin-Wigner (BW) and Mukherjee (Mk) state-specific MRCCSD(T) formulations.

Brillouin-Wigner↗

3-D Transient Hydraulic Tomography in Unconfined Aquifers with Fast Drainage Response

We investigate, through numerical experiments, the viability of three-dimensional transient hydraulic tomography (3DTHT) for identifying the spatial distribution of groundwater flow parameters (primarily, hydraulic conductivity K) in permeable, unconfined aquifers. To invert the large amount of transient data collected from 3DTHT surveys, we utilize an iterative geostatistical inversion strategy in which outer iterations progressively increase the number of data points fitted and inner iterations solve the quasilinear geostatistical formulas of Kitanidis. In order to base our numerical experiments around realistic scenarios, we utilize pumping rates, geometries, and test lengths similar to those attainable during 3DTHT field campaigns performed at the Boise Hydrogeophysical Research Site (BHRS). We also utilize hydrologic parameters that are similar to those observed at the BHRS and in other unconsolidated, unconfined fluvial aquifers. In addition to estimating K, we test the ability of 3DTHT to estimate both average storage values (specific storage Ss and specific yield Sy) as well as spatial variability in storage coefficients. The effects of model conceptualization errors during unconfined 3DTHT are investigated including: (1) assuming constant storage coefficients during inversion and (2) assuming stationary geostatistical parameter variability. Overall, our findings indicate that estimation of K is slightly degraded if storage parameters must be jointly estimated, but that this effect is quite small compared with the degradation of estimates due to violation of ‘‘structural’’ geostatistical assumptions. Practically, we find for our scenarios that assuming constant storage values during inversion does not appear to have a significant effect on K estimates or uncertainty bounds.

Environmental Molecular Sciences Laboratory↗

All-optical image denoising using a diffractive visual processor

Abstract Image denoising, one of the essential inverse problems, targets to remove noise/artifacts from input images. In general, digital image denoising algorithms, executed on computers, present latency due to several iterations implemented in, e.g., graphics processing units (GPUs). While deep learning-enabled methods can operate non-iteratively, they also introduce latency and impose a significant computational burden, leading to increased power consumption. Here, we introduce an analog diffractive image denoiser to all-optically and non-iteratively clean various forms of noise and artifacts from input images – implemented at the speed of light propagation within a thin diffractive visual processor that axially spans <250 × λ, where λ is the wavelength of light. This all-optical image denoiser comprises passive transmissive layers optimized using deep learning to physically scatter the optical modes that represent various noise features, causing them to miss the output image Field-of-View (FoV) while retaining the object features of interest. Our results show that these diffractive denoisers can efficiently remove salt and pepper noise and image rendering-related spatial artifacts from input phase or intensity images while achieving an output power efficiency of ~30–40%. We experimentally demonstrated the effectiveness of this analog denoiser architecture using a 3D-printed diffractive visual processor operating at the terahertz spectrum. Owing to their speed, power-efficiency, and minimal computational overhead, all-optical diffractive denoisers can be transformative for various image display and projection systems, including, e.g., holographic displays.

36 MATERIALS SCIENCE↗

Active learning enables generation of molecules that advance the known Pareto front

Although generative models hold promise for discovering molecules with optimized desired properties, they often fail to suggest synthesizable molecules that improve upon the properties of the structures represented in the training distribution. We find that this limitation arises not only from the molecule generation process itself, but also from the poor generalization capabilities of molecular property predictors. We address this challenge by creating a closed-loop molecule generation pipeline with iterative retraining on new quantum chemical simulation data. Compared against static, single-pass generative modeling approaches, only our closed-loop iterative workflow generates molecules with properties extending beyond the training distribution (up to 0.44 standard deviations beyond the original range) and achieves a 79% improvement in out-of-distribution molecule classification accuracy. Furthermore, by conditioning molecular generation on thermodynamic stability data obtained during the iterative loop, the proportion of stable and hence potentially synthesizable molecules generated is 3.5x higher than the next-best model.

Chemistry↗

Summary of ECE presentations at EC-18

There were nine ECE and one EBE presentation at EC-18. Four of the presentations were on various aspects of ECE on ITER. The ITER ECE diagnostic has entered an important detailed preliminary design phase and faces several design challenges in the next 2-3 years. Most of the other ECE presentations at the workshop were focused on applications of ECE diagnostics to plasma measurements, rather than improvements in technology, although it was apparent that heterodyne receiver technology continues to improve. CECE, ECE imaging and EBE imaging are increasingly providing valuable insights into plasma behavior that is important to understand if future burning plasma devices, such as ITER, FNSF and DEMO, are to be successful.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Tensor decomposition in post-Hartree–Fock methods. II. CCD implementation

In a previous publication, we have discussed the usage of tensor decomposition in the canonical polyadic (CP) tensor format for electronic structure methods. There, we focused on two-electron integrals and second order Møller-Plesset perturbation theory (MP2). In this work, we discuss the CP format for Coupled Cluster (CC) theory and present a pilot implementation for the Coupled Cluster Doubles method. We discuss the iterative solution of the CC amplitude equations using tensors in CP representation and present a tensor contraction scheme that minimizes the effort necessary for the rank reductions during the iterations. Furthermore, several details concerning the reduction of complexity of the algorithm, convergence of the CC iterations, truncation errors, and the choice of threshold for chemical accuracy are discussed.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

A new approach to approximate equation-of-motion coupled cluster with triple excitations

Accurate methods for excited, ionized, and electron-attached states are critical to the study of many chemical species such as reactive intermediates, radicals, and ionized systems. The equation-of-motion coupled cluster singles, doubles, and triples (EOM-CCSDT) family of methods is very accurate (roughly similar in accuracy as for CCSDT calculations of the ground state), but the computational cost scales iteratively as the eighth power of the system size. Many approximations already exist, although most either correct only the excited state or require an iterative $\mathscr{O}$(n 7 ) procedure which can also be prohibitively expensive. In this paper, new methods, termed EOM-CCSD(T)(a) and EOM-CCSD(T)(a)*, are proposed which correct both the ground and excited states based on a shared effective Hamiltonian, and the latter of which includes only non-iterative corrections to both the CCSD and EOM-CCSD energies. These methods are found to significantly improve the description of excited and ionized potential energy surfaces, equilibrium geometries, and harmonic frequencies; the accuracy is very close to that of full EOM-CCSDT.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Loss of relativistic electrons when magnetic surfaces are broken

Relativistic runaway electrons in ITER could be confined in a broad annulus of stochastic magnetic field lines bounded by an annulus of magnetic surfaces. The outer confining annulus can be broken by either an evolution of the magnetic field or by the drift of the plasma into the walls. Both possibilities are studied, and in both cases, the relativistic electrons in the stochastic region are lost to the walls in a short pulse of length $\tau$ ℓ along a narrow tube, which carries a flux f ψ st , where f ~ 10 -3 and ψ st is the toroidal flux in stochastic annulus. Both $\tau$ ℓ and f are determined by two parameters: the time it takes for a toroidal transit of a relativistic electron $\tau$ t = 2πR/c, which is approximately 0.1 μs in ITER, and the evolution time $\tau$ ev , which is of order 100 ms in most conditions of interest for ITER. The concept of turnstiles in Hamiltonian mechanics is then used to obtain the relation between $\tau$ ℓ and f and $\tau$ t and $\tau$ ev . The turnstile concept is also important in the theory of divertors for stellarators.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Robust determination of the chemical potential in the pole expansion and selected inversion method for solving Kohn-Sham density functional theory

Fermi operator expansion (FOE) methods are powerful alternatives to diagonalization type methods for solving Kohn-Sham density functional theory (KSDFT). One example is the pole expansion and selected inversion (PEXSI) method, which approximates the Fermi operator by rational matrix functions and reduces the computational complexity to at most quadratic scaling for solving KSDFT. Unlike diagonalization type methods, the chemical potential often cannot be directly read off from the result of a single step of evaluation of the Fermi operator. Hence multiple evaluations are needed to be sequentially performed to compute the chemical potential to ensure the correct number of electrons within a given tolerance. This hinders the performance of FOE methods in practice. In this paper, we develop an efficient and robust strategy to determine the chemical potential in the context of the PEXSI method. The main idea of the new method is not to find the exact chemical potential at each self-consistent-field (SCF) iteration but to dynamically and rigorously update the upper and lower bounds for the true chemical potential, so that the chemical potential reaches its convergence along the SCF iteration. Instead of evaluating the Fermi operator for multiple times sequentially, our method uses a two-level strategy that evaluates the Fermi operators in parallel. In the regime of full parallelization, the wall clock time of each SCF iteration is always close to the time for one single evaluation of the Fermi operator, even when the initial guess is far away from the converged solution. We demonstrate the effectiveness of the new method using examples with metallic and insulating characters, as well as results from ab initio molecular dynamics.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Toroidal modeling of runaway electron loss due to 3-D fields in DIII-D and COMPASS

The 3-D field induced relativistic runaway electron (RE) loss has been simulated for DIII-D, COMPASS and ITER plasmas, utilizing the MARS-F code incorporated with the recently developed and updated RE orbit module (REORBIT). Modeling shows effectively 100% loss of a post-disruption, high-current runaway beam in DIII-D, due to the 1 kG level of magnetic field perturbation produced by a fast growing n = 1 resistive kink instability. The RE loss is shown to be independent of the particle energy or the initial location of particles in the configuration space. Applied resonant magnetic perturbation (RMP) fields from in-vessel coils are not effective for RE beam mitigation in DIII-D, but do produce finite (>10%) RE loss in COMPASS, consistent with experimental observations in above two devices. The major reasons for this difference in RE control by RMP between these two devices are (i) the coil proximity to the RE beam and (ii) the effective coil current scaling versus the machine size and the toroidal magnetic field. About 10% RE loss fraction is also predicted for an ITER 15 MA scenario with pre-disruption plasma, highlighting the role of the plasma response. Up to 30% loss is computed, however, by artificially scaling the equilibrium pressure to zero. This is due to the more resistive plasma response and stronger resulting field line stochasticity. Distributions of the lost REs to the limiting surface show poloidally peaked profile near the high-field-side in both DIII-D and COMPASS, covering about 100o poloidal angle. Higher perturbation field level and/or higher particle energy also result in REs being lost to the low-field-side of the limiting surface of these two devices, increasing the effective wetted area. Finally, for the modeled ITER plasmas, the applied RMP field, with optimal poloidal spectrum that maximizes the edge localized mode control, leads to REs being lost to the lower divertor region of the limiting surface within a narrow poloidal band.

3-D field↗

Fusion product measurements by nuclear diagnostics in the Joint European Torus deuterium–tritium 2 campaign (invited)

We report a new deuterium–tritium experimental, DTE2, campaign has been conducted at the Joint European Torus (JET) between August 2021 and late December 2021. Motivated by significant enhancements in the past decade at JET, such as the ITER-like wall and enhanced auxiliary heating power, the campaign achieved a new fusion energy world record and performed a broad range of fundamental experiments to inform ITER physics scenarios and operations. New capabilities in the area of fusion product measurements by nuclear diagnostics were available as a result of a decade long enhancement program. These have been tested for the first time in DTE2 and a concise overview is provided here. Confined alpha particle measurements by gamma-ray spectroscopy were successfully demonstrated, albeit with limitations at neutron rates higher than some 10 17 n/s. High resolution neutron spectroscopy measurements with the magnetic proton recoil instrument were complemented by novel data from a set of synthetic diamond detectors, which enabled studies of the supra-thermal contributions to the neutron emission. In the area of escaping fast ion diagnostics, a lost fast ion detector and a set of Faraday cups made it possible to determine information on the velocity space and poloidal distribution of the lost alpha particles for the first time. This extensive set of data provides unique information for fundamental physics studies and validation of the numerical models, which are key to inform the physics and scenarios of ITER.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Data-driven linear time advance operators for the acceleration of plasma physics simulation

In this study, we demonstrate the application of data-driven linear operator construction for time advance with a goal of accelerating plasma physics simulation. We apply dynamic mode decomposition (DMD) to data produced by the nonlinear SOLPS-ITER (Scrape-off Layer Plasma Simulator - International Thermonuclear Experimental Reactor) plasma boundary code suite in order to estimate a series of linear operators and monitor their predictive accuracy via online error analysis. We find that this approach defines when these dynamics can be represented by a sequence of approximate linear operators and is essential for providing consistent projections when compared to an unconstrained application. For linear diffusion and advection–diffusion fluid test problems, we construct and apply operators within explicit and implicit time advance schemes, demonstrating that stability can be robustly guaranteed in each case. We further investigate the use of the linear time advance operators within several integration methods including forward Euler, backward Euler, and the matrix exponential. The application of this method to simulation data from SOLPS-ITER, with varying levels of Markov chain Monte Carlo numerical noise, shows that constrained DMD operators yield a capability to identify, extract, and integrate a (slow) subset of the present timescales. Example applications show that for projected speedup factors of [Formula: see text], and [Formula: see text], a mean relative error of 3%, 5%, and 8% and maximum relative error less than 20% are achievable, which appears acceptable for typical SOLPS-ITER steady-state simulations.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Long-pulse high-performance H-mode plasmas achieved on EAST

A record duration of a 310 s H-mode plasma (H 98y2 ~ 1.3, n e /n GW ~ 0.7, f BS > 50%) has been recently achieved on experimental advanced superconducting tokamak (EAST) with metal walls, exploiting the device's improved long-pulse capabilities. The experiment demonstrates good control of tungsten concentration, core/edge MHD stability, and particle and heat exhaust with an ITER-like tungsten divertor and zero injected torque, establishing a milestone on the path to steady-state long-pulse high-performance scenarios in support of ITER and CFETR. Important synergistic effects are leveraged toward this result, which relies purely on radio frequency (RF) powers for heating and current drive (H&CD). On-axis electron cyclotron heating enhances the H&CD efficiency from lower hybrid wave injection, increasing confinement quality and enabling fully non-inductive operation at high density (n e /n GW ~ 70%) and high poloidal beta (β P ~ 2.5). A small-amplitude grassy edge localized mode regime facilitates the RF power coupling to the H-mode edge and reduces divertor sputtering/erosion. The high energy confinement quality (H 98y2 ~ 1.3) is achieved with the experimental and simulated results pointing to the strong effect of Shafranov shift on turbulence. Transport analysis suggests that trapped electron modes dominate in the core region during the record discharge. The detailed physics processes (RF synergy, core-edge integration, confinement properties, etc.) of the steady-state operation will be illustrated in the content. In the future, EAST will aim at accessing more relevant dimensionless parameters to develop long-pulse high-performance plasma toward ITER and CFETR steady-state advanced operation.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Space-Dependent Wielandt Shifts for Multigroup Diffusion Eigenvalue Problems

We present a new concept—the space-dependent Wielandt shift (SDWS)—for accelerating the convergence of the power iteration (PI) scheme for multigroup diffusion k-eigenvalue problems. The SDWS improves on standard Wielandt shift (WS) techniques, which are empirical in nature and are typically effective only when the current estimate of the solution is reasonably converged. By accounting for the physics of the problem through SDWS, we are able to improve the acceleration for the initial iterates when the current estimate of the solution is not close to convergence. Numerical results from one-dimensional problems suggest that, compared to standard WS techniques, the new SDWS techniques can provide upward of a 46% reduction in the number of PIs required for convergence and a 40% reduction in the computational time required. This improvement is sensitive to several problem-dependent factors, such as the geometry and energy-dependence of the problem, the spatial discretization, and the initial guess. The reduction in computational time is also dependent on the linear solver in the PI scheme, as it is well known that WSs can significantly worsen the conditioning of the diffusion linear system. In this paper, we provide a detailed study of the impact of WSs on the performance of several iterative linear solvers. Results from our implementation of SDWS in the three-dimensional (3D) code MPACT show that SDWS can provide similar speedups for 3D multigroup diffusion eigenvalue problems. These results also show that moderate speedups can be obtained by applying SDWS to the coarse mesh finite difference (CMFD) solver in a CMFD-accelerated transport scheme. However, the benefit of doing this may be limited because all but the first few CMFD solves are relatively easy to converge, regardless of the WS used.

Nuclear Science & Technology↗

An investigation of Newton-Sketch and subsampled Newton methods

Sketching, a dimensionality reduction technique, has received much attention in the statistics community. In this paper, we study sketching in the context of Newton's method for solving finite-sum optimization problems in which the number of variables and data points are both large. In this work, we study two forms of sketching that perform dimensionality reduction in data space: Hessian subsampling and randomized Hadamard transformations. Each has its own advantages, and their relative tradeoffs have not been investigated in the optimization literature. Additionally, our study focuses on practical versions of the two methods in which the resulting linear systems of equations are solved approximately, at every iteration, using an iterative solver. The advantages of using the conjugate gradient method vs. a stochastic gradient iteration are revealed through a set of numerical experiments, and a complexity analysis of the Hessian subsampling method is presented.

97 MATHEMATICS AND COMPUTING↗

A high-order spectral deferred correction strategy for low Mach number flow with complex chemistry

This article presents a fourth-order finite-volume algorithm in space and time for low Mach number reacting flow with detailed kinetics and transport. Our temporal integration scheme is based on a Multi-Implicit Spectral Deferred Correction (MISDC) strategy that iteratively couples advection, diffusion, and reactions evolving subject to a constraint. Our new approach overcomes a stability limitation of our previous second-order method encountered when trying to incorporate higher-order polynomial representations of the solution in time to increase accuracy. We have developed a new iterative scheme that naturally fits within our MISDC framework and allows us to conserve mass and energy while simultaneously satisfying the equation of state. We analyse the conditions for which the iterative schemes are guaranteed to converge to the fixed point solution. Finally, we present numerical examples illustrating the performance of the new method on premixed hydrogen, methane, and dimethyl ether flames.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗