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All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

AmeriFlux FLUXNET-1F US-SHC Sagehen Creek Field Station

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-SHC Sagehen Creek Field Station. This is the FLUXNET version of the carbon flux data for the site US-SHC Sagehen Creek Field Station produced by applying the standard ONEFlux (1F) software. Site Description - This tower is located at the Sagehen Creek Field Station of UC Berkeley. The 30m tower near the station has been used for meteorological measurements since at least 2006 and EC flux measurements were started in late June 2017. The area is dominated by coniferous forest with patches of grassland in between.

Wolf, Sebastian [ETH Zurich]↗
DOE OSTI2023

Hydrologic Impacts of a Strike-Slip Fault Zone: Insights from Joint 3D Body-Wave Tomography of Rock Valley

The Rock Valley fault zone (RVFZ), an intraplate strike-slip fault zone in the southern Nevada National Security Site (NNSS), hosted a series of very shallow (<3 km) earthquakes in 1993. The RVFZ may also have hydrological significance within the NNSS, potentially playing a role in regional groundwater flow, but there is a lack of local hydrological data. In the Spring of 2021, we collected active-source accelerated weight drop seismic data over part of the RVFZ to better characterize the shallow subsurface. Here, we manually picked ~17,000 P-wave travel times and over 14,000 S-wave travel times, which were inverted for P-wave velocity (V P ), S-wave velocity (V S ), and V P /V S ratio in a 3D joint tomographic inversion scheme. Seismic velocities are imaged as deep as ~700 m in areas and generally align with geologic and structural expectations. V P and V S are relatively reduced near mapped and inferred faults, with the most prominent lower V P and V S zone around the densest collection of faults. We image V P /V S ratios ranging from ~1.5 to ~2.4, the extremes of which occur at a depth of ~100 m and are juxtaposed across a fault. One possible interpretation of the imaged seismic velocities is enhanced fault damage near the densest collection of faults with relatively higher porosity and/or crack density at ~100 m depth, with patches of semiperched groundwater present in the sedimentary rock in higher V P /V S areas and drier rock in lower V P /V S areas. A relatively higher V P /V S area beneath the densest faults persists at depth, which suggests percolation of groundwater via the fault damage zone to the regionally connected lower carbonate aquifer. Potentially, the presence and movement of groundwater may have played a role in the 1993 earthquake aftershocks.

58 GEOSCIENCES↗
DOE OSTI2018

Risk Reduction of CO 2 Storage with Stochastic Simulations

The purpose of this project was to create an efficient and flexible tool based on principal component analysis (PCA) for a generation of differentiable realizations of porosity and permeability fields. Of particular interest were data which had significant connectivity between patches of the same rock type, which is called “binary”. The efficiency requirement needed a so called kernel PCA, and the binary images were found with the method called optimization based PCA (OPCA) for which interpretation is provided. The ability to honor given data at particular locations is also incorporated. The tool worked very well and efficiently for two dimensional (2-D) simulations. Furthermore, the tool was applied to a three-dimensional (3-D) dataset and determined that conditioning can be used to maintain the connectivity between vertical layers.

47 OTHER INSTRUMENTATION↗
DOE OSTI2019

AMReX: a framework for block-structured adaptive mesh refinement

AMReX is a C++ software framework that supports the development of block-structured adaptive mesh refinement (AMR) algorithms for solving systems of partial differential equations (PDEs) with complex boundary conditions on current and emerging architectures. AMR reduces the computational cost and memory footprint compared to a uniform mesh while preserving the local descriptions of different physical processes in complex multiphysics algorithms. Current AMReX-based application codes span a number of areas, including atmospheric modeling, astrophysics, combustion, cosmology, fluctuating hydrodynamics, multiphase flows, and particle accelerators. In particular, the AMReX-Astro GitHub repository holds a number of astrophysical modeling tools based on AMReX. The origins of AMReX trace back to the BoxLib software framework. AMReX supports a number of different time-stepping strategies and spatial discretizations. Solution strategies supported by AMReX range from level-by-level approaches (with or without subcycling in time) with multilevel synchronization to full-hierarchy approaches, and any combination thereof. User-defined kernels that operate on patches of data can be written in C++ or Fortran; there is also a Fortran-interface functionality which wraps the core C++ data structures and operations in Fortran wrappers so that an application code based on AMReX can be written entirely in Fortran.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2021

Free fermion entanglement with a semitransparent interface: the effect of graybody factors on entanglement islands

We study the entanglement entropy of free fermions in 2d in the presence of a partially transmitting interface that splits Minkowski space into two half-spaces. We focus on the case of a single interval that straddles the defect, and compute its entanglement entropy in three limits: Perturbing away from the fully transmitting and fully reflecting cases, and perturbing in the amount of asymmetry of the interval about the defect. Using these results within the setup of the Poincaré patch of AdS _2 2 statically coupled to a zero temperature flat space bath, we calculate the effect of a partially transmitting AdS _2 2 boundary on the location of the entanglement island region. The partially transmitting boundary is a toy model for black hole graybody factors. Our results indicate that the entanglement island region behaves in a monotonic fashion as a function of the transmission/reflection coefficient at the interface.

Kruthoff, Jorrit↗
DOE OSTI2025

A microscopic realization of dS$_3$

We propose a precise duality between pure de Sitter quantum gravity in 2+1 2 + 1 dimensions and a double-scaled matrix integral. This duality unfolds in two distinct aspects. First, by carefully quantizing the gravitational phase space, we arrive at a novel proposal for the quantum state of the universe at future infinity. We compute cosmological correlators of massive particles in the universe specified by this wavefunction. Integrating these correlators over the metric at future infinity yields gauge-invariant observables, which are identified with the string amplitudes of the complex Liouville string [S. Collier et al., arXiv: 2409.17246]. This establishes a direct connection between integrated cosmological correlators and the resolvents of the matrix integral dual to the complex Liouville string, thereby demonstrating one aspect of the dS _3 3 /matrix integral duality. The second aspect concerns the cosmological horizon of the dS static patch and the Gibbons-Hawking entropy it is conjectured to encode. We show that this entropy can be reproduced exactly by counting the entries of the matrix.

Collier, Scott (ORCID:0000000286476653)↗
DOE OSTI2013

The Effects of Iron Complexing Ligands on the Long Term Ecosystem Response to Iron Enrichment of HNLC waters (Final Activity Report)

Substantial increases in the concentrations of the stronger of two Fe(III) complexing organic ligand classes measured during the mesoscale Fe enrichment studies IronEx II and SOIREE appeared to sharply curtailed Fe availability to diatoms and thus limited the efficiency of carbon sequestration to the deep. Detailed observations during IronEx II (equatorial Pacific Ocean) and SOIREE (Southern Ocean –Pacific sector) indicate that the diatoms began re-experiencing Fe stress even though dissolved Fe concentrations remained elevated in the patch. This surprising outcome likely is related to the observed increased concentrations of strong Fe(III)-complexing ligands in seawater. Preliminary findings from other studies indicate that diatoms may not readily obtain Fe from these chemical species whereas Fe bound by strong ligands appears to support growth of cyanobacteria and nanoflagellates. The difficulty in assessing the likelihood of these changes with in-situ mesoscale experiments is the extended monitoring period needed to capture the long-term trajectory of the carbon cycle. A more detailed understanding of Fe complexing ligand effects on long-term ecosystem structure and carbon cycling is essential to ascertain not only the effect of Fe enrichment on short-term carbon sequestration in the oceans, but also the potential effect of Fe enrichment in modifying ecosystem structure and trajectory.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2013

Ceph Parallel File System Evaluation Report

We used Data Direct Networks’ (DDN) SFA10K as the storage backend during this evaluation. It consists of 200 SAS drives and 280 SATA drives, organized into various RAID levels by two active-active RAID controllers. The exported RAID groups by these controllers are driven by four hosts. Each host has two InfiniBand (IB) QDR connections to the storage backend. We used a single dualport Mellanox connectX IB card per host. By our calculation, this setup can saturate SFA10K’s maximum theoretical throughput (~12 GB/s). Our Ceph testbed employs a collection of testing nodes. These nodes and their roles are summarized in Table 1. In the following discussion, we use “servers”, “osd servers”, “server hosts” interchangeably. We will emphasize with “client” prefix when we want to distinguish it from above. All hosts (client and servers) were configured with Redhat 6.3 and kernel version 3.5.1 initially, and later upgraded to 3.9 (rhl-ceph image), Glibc 2.12 with syncfs support, locally patched. We used the Ceph 0.48 and 0.55 release in the initial tests, upgraded to 0.64 and then to 0.67RC for a final round of tests.

Wang, Feiyi↗
DOE OSTI2014

Characterization of the NPOD3 Detectors in MCNP5 and MCNP6

Researchers performed a series of measurements in May 2012 to characterize the NPOD3 detector systems. The detectors were placed in varying states of disassembly to determine the effect of individual components on detection efficiency. A 4.5 kg α-phase Pu sphere known as the Los Alamos BeRP Ball was used as the SNM source in both a bare configuration and reflected by varying thicknesses of polyethylene. A set of simulations matching the experimental setups were run and the data were compared to the measured data. The total and leakage multiplication and the inferred k values were determined for both the simulations and the measurements. Table 3 shows a comparison of the results from MCNP6 and MCNP5 with the list-mode patch to the measured results. The count rates for the calculated results were obtained by dividing the total line count in the list-mode file (equivalent to the total number of absorptions in the NPOD detectors) by the total run time. The count rates are identical for both codes, and they both produce the same multiplicity and inferred k values regardless of measurement time as expected.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2014

Understanding the Complexities of Subnational Incentives in Supporting a National Market for Distributed Photovoltaics

Subnational policies pertaining to photovoltaic (PV) systems have increased in volume in recent years and federal incentives are set to be phased out over the next few. Understanding how subnational policies function within and across jurisdictions, thereby impacting PV market development, informs policy decision making. This report was developed for subnational policy-makers and researchers in order to aid the analysis on the function of PV system incentives within the emerging PV deployment market. The analysis presented is based on a 'logic engine,' a database tool using existing state, utility, and local incentives allowing users to see the interrelationships between PV system incentives and parameters, such as geographic location, technology specifications, and financial factors. Depending on how it is queried, the database can yield insights into which combinations of incentives are available and most advantageous to the PV system owner or developer under particular circumstances. This is useful both for individual system developers to identify the most advantageous incentive packages that they qualify for as well as for researchers and policymakers to better understand the patch work of incentives nationwide as well as how they drive the market.

14 SOLAR ENERGY↗
DOE OSTI2013

A Fault-Oblivious Extreme-Scale Execution Environment (FOX)

IBM Research’s contribution to the Fault Oblivious Extreme-scale Execution Environment (FOX) revolved around three core research deliverables: • collaboration with Boston University around the Kittyhawk cloud infrastructure which both enabled a development and deployment platform for the project team and provided a fault-injection testbed to evaluate prototypes • operating systems research focused on exploring role-based operating system technologies through collaboration with Sandia National Labs on the NIX research operating system and collaboration with the broader IBM Research community around a hybrid operating system model which became known as FusedOS • IBM Research also participated in an advisory capacity with the Boston University SESA project, the core of which was derived from the K42 operating system research project funded in part by DARPA’s HPCS program. Both of these contributions were built on a foundation of previous operating systems research funding by the Department of Energy’s FastOS Program. Through the course of the X-stack funding we were able to develop prototypes, deploy them on production clusters at scale, and make them available to other researchers. As newer hardware, in the form of BlueGene/Q, came online, we were able to port the prototypes to the new hardware and release the source code for the resulting prototypes as open source to the community. In addition to the open source coded for the Kittyhawk and NIX prototypes, we were able to bring the BlueGene/Q Linux patches up to a more recent kernel and contribute them for inclusion by the broader Linux community. The lasting impact of the IBM Research work on FOX can be seen in its effect on the shift of IBM’s approach to HPC operating systems from Linux and Compute Node Kernels to role-based approaches as prototyped by the NIX and FusedOS work. This impact can be seen beyond IBM in follow-on ideas being incorporated into the proposals for the Exasacale Operating Systems/Runtime program.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2014

Metrology for Industry for use in the Manufacture of Grazing Incidence Beam Line Mirrors

The goal of this SBIR was to determine the slope sensitivity of Specular Reflection Deflectometry (SRD) and whether shearing methods had the sensitivity to be able to separate errors in the test equipment from slope error in the unit under test (UUT), or mirror. After many variations of test parameters it does not appear that SRD yields results much better than 1 μ radian RMS independent of how much averaging is done. Of course, a single number slope sensitivity over the full range of spatial scales is not a very insightful number in the same sense as a single number phase or height RMS value in interferometry does not tell the full story. However, the 1 μ radian RMS number is meaningful when contrasted with a sensitivity goal of better than 0.1 μ radian RMS. Shearing is a time proven method of separating the errors in a measurement from the actual shape of a UUT. It is accomplished by taking multiple measurements while moving the UUT relative to the test instrument. This process makes it possible to separate the two errors sources but only to a sensitivity of about 1 μ radian RMS. Another aspect of our conclusions is that this limit probably holds largely independent of the spatial scale of the test equipment. In the proposal for this work it was suggested that a test screen the full size of the UUT could be used to determine the slopes on scales of maybe 0.01 to full scale of the UUT while smaller screens and shorter focal length lenses could be used to measure shorter, or smaller, patches of slope. What we failed to take into consideration was that as the scale of the test equipment got smaller so too did the optical lever arm on which the slope was calculated. Although we did not do a test with a shorter focal length lens over a smaller sample area it is hard to argue with the logic that the slope sensitivity will be about the same independent of the spatial scale of the measurement assuming the test equipment is similarly scaled. On a more positive note, SRD does appear to be a highly flexible, easy to implement, rather inexpensive test for free form optics that require a dynamic range that exceeds that of interferometry. These optics are quite often specified to have more relaxed slope errors, on the order of 1 μ radian RMS or greater. It would be shortsighted to not recognize the value of this test method in the bigger picture.

47 OTHER INSTRUMENTATION↗
DOE OSTI2015

Threshold responses to interacting global changes in a California grassland ecosystem

Building on the history and infrastructure of the Jasper Ridge Global Change Experiment, we conducted experiments to explore the potential for single and combined global changes to stimulate fundamental type changes in ecosystems that start the experiment as California annual grassland. Using a carefully orchestrated set of seedling introductions, followed by careful study and later removal, the grassland was poised to enable two major kinds of transitions that occur in real life and that have major implications for ecosystem structure, function, and services. These are transitions from grassland to shrubland/forest and grassland to thistle patch. The experiment took place in the context of 4 global change factors – warming, elevated CO 2 , N deposition, and increased precipitation – in a full-factorial array, present as all possible 1, 2, 3, and 4-factor combinations, with each combination replicated 8 times.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2015

Peridynamic Multiscale Finite Element Methods

The problem of computing quantum-accurate design-scale solutions to mechanics problems is rich with applications and serves as the background to modern multiscale science research. The prob- lem can be broken into component problems comprised of communicating across adjacent scales, which when strung together create a pipeline for information to travel from quantum scales to design scales. Traditionally, this involves connections between a) quantum electronic structure calculations and molecular dynamics and between b) molecular dynamics and local partial differ- ential equation models at the design scale. The second step, b), is particularly challenging since the appropriate scales of molecular dynamic and local partial differential equation models do not overlap. The peridynamic model for continuum mechanics provides an advantage in this endeavor, as the basic equations of peridynamics are valid at a wide range of scales limiting from the classical partial differential equation models valid at the design scale to the scale of molecular dynamics. In this work we focus on the development of multiscale finite element methods for the peridynamic model, in an effort to create a mathematically consistent channel for microscale information to travel from the upper limits of the molecular dynamics scale to the design scale. In particular, we first develop a Nonlocal Multiscale Finite Element Method which solves the peridynamic model at multiple scales to include microscale information at the coarse-scale. We then consider a method that solves a fine-scale peridynamic model to build element-support basis functions for a coarse- scale local partial differential equation model, called the Mixed Locality Multiscale Finite Element Method. Given decades of research and development into finite element codes for the local partial differential equation models of continuum mechanics there is a strong desire to couple local and nonlocal models to leverage the speed and state of the art of local models with the flexibility and accuracy of the nonlocal peridynamic model. In the mixed locality method this coupling occurs across scales, so that the nonlocal model can be used to communicate material heterogeneity at scales inappropriate to local partial differential equation models. Additionally, the computational burden of the weak form of the peridynamic model is reduced dramatically by only requiring that the model be solved on local patches of the simulation domain which may be computed in parallel, taking advantage of the heterogeneous nature of next generation computing platforms. Addition- ally, we present a novel Galerkin framework, the 'Ambulant Galerkin Method', which represents a first step towards a unified mathematical analysis of local and nonlocal multiscale finite element methods, and whose future extension will allow the analysis of multiscale finite element methods that mix models across scales under certain assumptions of the consistency of those models.

42 ENGINEERING↗
DOE OSTI2015

Year End Progress Report on Rattlesnake Improvements

Rattlesnake is a MOOSE-based radiation transport application developed at INL to support modern multi-physics simulations. At the beginning of the last year, Rattlesnake was able to perform steady-state, transient and eigenvalue calculations for the multigroup radiation transport equations. Various discretization schemes, including continuous finite element method (FEM) with discrete ordinates method (SN) and spherical harmonics expansion method (PN) for the self-adjoint angular flux (SAAF) formulation, continuous FEM (CFEM) with SN for the least square (LS) formulation, diffusion approximation with CFEM and discontinuous FEM (DFEM), have been implemented. A separate toolkit, YAKXS, for multigroup cross section management was developed to support Rattlesnake calculations with feedback both from changes in the field variables, such as fuel temperature, coolant density, and etc., and in isotope inventory. The framework for doing nonlinear diffusion acceleration (NDA) within Rattlesnake has been set up, and both NDA calculations with SAAF-SN-CFEM scheme and Monte Carlo with OpenMC have been performed. It was also used for coupling BISON and RELAP-7 for the full-core multiphysics simulations. Within the last fiscal year, significant improvements have been made in Rattlesnake. Rattlesnake development was migrated into our internal GITLAB development environment at the end of year 2014. Since then total 369 merge requests has been accepted into Rattlesnake. It is noted that the MOOSE framework that Rattlesnake is based on is under continuous developments. Improvements made in MOOSE can improve the Rattlesnake. It is acknowledged that MOOSE developers spent efforts on patching Rattlesnake for the improvements made on the framework side. This report will not cover the code restructuring for better readability and modularity and documentation improvements, which we have spent tremendous effort on. It only details some of improvements in the following sections.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗
DOE OSTI2015

Hydrate Evolution in Response to Ongoing Environmental Shifts

Natural gas hydrates have the potential to become a vital domestic clean-burning energy source. However, past changes in environmental conditions have caused hydrates to become unstable and trigger both massive submarine landslides and the development of crater-like pockmarks, thereby releasing methane into the overlying seawater and atmosphere, where it acts as a powerful greenhouse gas. This project was designed to fill critical gaps in our understanding of domestic hydrate resources and improve forecasts for their response to environmental shifts. Project work can be separated into three interrelated components, each involving the development of predictive mathematical models. The first project component concerns the role of sediment properties on the development and dissociation of concentrated hydrate anomalies. To this end, we developed numerical models to predict equilibrium solubility of methane in twophase equilibrium with hydrate as a function of measureable porous medium characteristics. The second project component concerned the evolution of hydrate distribution in heterogeneous reservoirs. To this end, we developed numerical models to predict the growth and decay of anomalies in representative physical environments. The third project component concerned the stability of hydrate-bearing slopes under changing environmental conditions. To this end, we developed numerical treatments of pore pressure evolution and consolidation, then used "infinite-slope" analysis to approximate the landslide potential in representative physical environments, and developed a "rate-and-state" frictional formulation to assess the stability of finite slip patches that are hypothesized to develop in response to the dissociation of hydrate anomalies. The increased predictive capabilities that result from this work provide a framework for interpreting field observations of hydrate anomalies in terms of the history of environmental forcing that led to their development. Moreover, by taking explicit account of anomaly dissociation, project results are designed to help improve forecasts for changes in slope stability that could pose significant threats to energy infrastructure, disrupt hydrate reserves, and pollute the atmosphere with vast quantities of methane. This report presents the details of our work and outlines some of the highlights from our findings.

03 NATURAL GAS↗
DOE OSTI2015

Investigating the Role of Ferromagnetic Materials on the Casimir Force & Investigation of the Van Der Waals/Casimir Force with Graphene

Duration of award was from 4/15/10-4/14/15. In this grant period our contributions to the field of VdW/Casimir forces are 24 refereed publications in journals such as Physical Review Letters (4) [1-4], Physical Review B (10) [5-14], Physical Review D (2) [15,16], Applied Physics Letters (1) [17], Review of Scientific Instruments (1) [18] and the International Journal of Modern Physics A (5) [19-23] and B(1) (invited review article [24]). We presented 2 plenary conference talks, 3 lectures at the Pan American School on Frontiers in Casimir Physics, 2 conferences, 1 colloquium and 11 APS talks. If publications are restricted to only those with direct connection to the aims proposed in the prior grant period, then it will be a total of 12: Physical Review Letters (3) [2-4], Physical Review B (6) [6-8,12,13,25], Review of Scientific Instruments (1) [18], International Journal of Modern Physics A (1) [19] and B(1) [169]. A brief aggregated description of the directly connected accomplishments is below. The following topics are detailed: dispersion force measurements with graphene, dispersion force from ferromagnetic metals, conclusion on role of electrostatic patches, UV radiation induced modification of the Casimir force, low temperature measurement of the Casimir force, and Casimir force from thin fluctuating membranes.

36 MATERIALS SCIENCE↗
DOE OSTI2016

The Rock that Hit New York

On January 12, 1975, a rock seemed to fall from the sky over New York State’s Schoharie County hitting the tractor of a local farmer, who was “preparing his fields for spring planting.” As the farmer later described the event to a reporter from the UFO INVESTIGATOR, the object glanced off the tractor, fell to the ground, and melted its way through a patch of ice that was two and one half inches thick. The farmer, Leonard Tillapaugh, called the county sheriff, Harvey Stoddard, who recovered the rock, noting that it “was still warm.” Why and how a sample of the rock came to Los Alamos is not known. However, it captivated a wide Laboratory audience, was subjected to rigorous testing and evaluation. Los Alamos used the scientific method in the manner promoted by Hynek. Did Los Alamos solve the mystery of the rock’s origin? Not definitively. Although the exact origin could not be determined, it was shown conclusively that the rock was not from outer space. With that said, the saga of Rock that hit New York came to an end. Nothing more was said or written about it. The principals involved have long since passed from the scene. The NICAP ceased operations in 1980. And, the rock, itself, has disappeared.

99 GENERAL AND MISCELLANEOUS↗