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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 1,549 records · Page 86
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Updated resources for exploring experimentally-determined PDB structures and Computed Structure Models at the RCSB Protein Data Bank

The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB, RCSB.org), the US Worldwide Protein Data Bank (wwPDB, wwPDB.org) data center for the global PDB archive, provides access to the PDB data via its RCSB.org research-focused web portal. We report substantial additions to the tools and visualization features available at RCSB.org, which now delivers more than 227000 experimentally determined atomic-level three-dimensional (3D) biostructures stored in the global PDB archive alongside more than 1 million Computed Structure Models (CSMs) of proteins (including models for human, model organisms, select human pathogens, crop plants and organisms important for addressing climate change). In addition to providing support for 3D structure motif searches with user-provided coordinates, new features highlighted herein include query results organized by redundancy-reduced Groups and summary pages that facilitate exploration of groups of similar proteins. Newly released programmatic tools are also described, as are enhanced training opportunities.

Burley, Stephen K.↗
DOE OSTI2018

Examples of renormalization group transformations for image sets

Using the example of configurations generated with the worm algorithm for the two-dimensional Ising model, we propose renormalization group (RG) transformations, inspired by the tensor RG, that can be applied to sets of images. We relate criticality to the logarithmic divergence of the largest principal component. We discuss the changes in link occupation under the RG transformation, suggest ways to obtain data collapse, and compare with the two-state tensor RG approximation near the fixed point.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2021

Data-driven Event Identification in the U.S. Power Systems Based on 2D-OLPP and RUSBoosting Trees

Accurate event identification is an essential part of situation awareness ability for power system operators. Therefore, this work proposes an integrated event identification algorithm for power systems. First, to obtain and filter suitable inputs for event identification, an event detection trigger based on the rate of change of frequency (RoCoF) is presented. Then, the wave arrival time difference-based triangulation method considering the anisotropy of wave propagation speed is utilized to estimate the location of the detected event. Next, the two-dimensional orthogonal locality preserving projection (2D-OLPP)-based method, which is suitable for multiple types of measured data, is employed to achieve higher effectiveness in extracting the event features compared with traditional one-dimensional projection and principle component analysis (PCA). Finally, the random undersampling boosted (RUSBoosted) trees-based classifier, which can mitigate the data sample imbalance issue, is utilized to identify the type of the detected event. Furthermore, the proposed approach is demonstrated using the actual measurement data of U.S. power systems from FNET/GridEye. Comparison results show that the proposed event identification algorithm can achieve better performance than existing approaches.

24 POWER TRANSMISSION AND DISTRIBUTION↗
DOE OSTI2017

Possible version of the compression degradation of the thermonuclear indirect-irradiation targets at the national ignition facility and a reason for the failure of ignition

The main parameters of compression of a target and tendencies at change in the irradiation conditions are determined by analyzing the published results of experiments at the megajoule National Ignition Facility (NIF) on the compression of capsules in indirect-irradiation targets by means of the one-dimensional RADIAN program in the spherical geometry. A possible version of the “failure of ignition” of an indirect-irradiation target under the NIF conditions is attributed to radiation transfer. The application of onedimensional model to analyze the National Ignition Campaign (NIC) experiments allows identifying conditions corresponding to the future ignition regime and distinguishing them from conditions under which ignition does not occur.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2020

Two VHH Antibodies Neutralize Botulinum Neurotoxin E1 by Blocking Its Membrane Translocation in Host Cells

Botulinum neurotoxin serotype E (BoNT/E) is one of the major causes of human botulism, which is a life-threatening disease caused by flaccid paralysis of muscles. After receptor-mediated toxin internalization into motor neurons, the translocation domain (HN) of BoNT/E transforms into a protein channel upon vesicle acidification in endosomes and delivers its protease domain (LC) across membrane to enter the neuronal cytosol. It is believed that the rapid onset of BoNT/E intoxication compared to other BoNT serotypes is related to its swift internalization and translocation. We recently identified two neutralizing single-domain camelid antibodies (VHHs) against BoNT/E1 termed JLE-E5 and JLE-E9. Here, we report the crystal structures of these two VHHs bound to the LCHN domain of BoNT/E1. The structures reveal that these VHHs recognize two distinct epitopes that are partially overlapping with the putative transmembrane regions on HN, and therefore could physically block membrane association of BoNT/E1. This is confirmed by our in vitro studies, which show that these VHHs inhibit the structural change of BoNT/E1 at acidic pH and interfere with BoNT/E1 association with lipid vesicles. Therefore, these two VHHs neutralize BoNT/E1 by preventing the transmembrane delivery of LC. Furthermore, structure-based sequence analyses show that the 3-dimensional epitopes of these two VHHs are largely conserved across many BoNT/E subtypes, suggesting a broad-spectrum protection against the BoNT/E family. In summary, this work improves our understanding of the membrane translocation mechanism of BoNT/E and paves the way for developing VHHs as diagnostics or therapeutics for the treatment of BoNT/E intoxication.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2016

In vivo visualization method by absolute blood flow velocity based on speckle and fringe pattern using two-beam multipoint laser Doppler velocimetry

Two-beam multipoint laser Doppler velocimetry (two-beam MLDV) is a non-invasive imaging technique able to provide an image of two-dimensional blood flow and has potential for observing cancer as previously demonstrated in a mouse model. In two-beam MLDV, the blood flow velocity can be estimated from red blood cells passing through a fringe pattern generated in the skin. The fringe pattern is created at the intersection of two beams in conventional LDV and two-beam MLDV. Being able to choose the depth position is an advantage of two-beam MLDV, and the position of a blood vessel can be identified in a three-dimensional space using this technique. Initially, we observed the fringe pattern in the skin, and the undeveloped or developed speckle pattern generated in a deeper position of the skin. The validity of the absolute velocity value detected by two-beam MLDV was verified while changing the number of layers of skin around a transparent flow channel. The absolute velocity value independent of direction was detected using the developed speckle pattern, which is created by the skin construct and two beams in the flow channel. Finally, we showed the relationship between the signal intensity and the fringe pattern, undeveloped speckle, or developed speckle pattern based on the skin depth. The Doppler signals were not detected at deeper positions in the skin, which qualitatively indicates the depth limit for two-beam MLDV.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2018

Improved electrochemical cycling stability of intercalation battery electrodes via control of material morphology

Using a model tunnel manganese oxide with the todorokite crystal structure (T-MnO 2 ), we reveal that controlling the morphology of the active material can improve the cycling stability of intercalation battery electrodes. The T-MnO 2 structure is built from tunnels that provide spacious 1D diffusion channels for charge-carrying ions. Taking advantage of the unique ability to synthesize T-MnO 2 in the form of both highly crystalline two-dimensional (2D) nanoplatelets and one-dimensional (1D) nanowires through a facile hydrothermal growth method, we investigated the effect of nanoscale particle dimensions on reversible battery cycling. Insertion of ions into the tunnels results in anisotropic expansion of the structure, making T-MnO 2 with different morphologies an excellent model platform to understand how intercalation-induced volume change, typically leading to the deterioration of the electrode performance over extended cycling, can be controlled through synthesis of targeted morphologies. T-MnO 2 nanowires showed not only significantly improved capacity retention but also substantially higher specific capacity than the T-MnO 2 nanoplatelets. The enhanced electrochemical properties of the nanowire electrodes could be attributed to the larger surface-to-volume ratio than that of nanoplatelets, resulting in higher contact area with electrolyte for the nanowires. Moreover, due to the smaller cross-sectional area of the nanowires, volume expansion and contraction perpendicular to the structural tunnels induced by reversible ion intercalation occurs in a more facile fashion. In this research we demonstrate that chemically controlling morphology and producing particles with nanostructure dimensionality replicating that of atomic structure (i.e., 1D morphology and 1D structure) makes it possible to enhance material performance.

77 NANOSCIENCE AND NANOTECHNOLOGY↗
DOE OSTI2012

SURVIVAL OF AMORPHOUS WATER ICE ON CENTAURS

Centaurs are believed to be Kuiper Belt objects in transition between Jupiter and Neptune before possibly becoming Jupiter family comets. Some indirect observational evidence is consistent with the presence of amorphous water ice in Centaurs. Some of them also display a cometary activity, probably triggered by the crystallization of the amorphous water ice, as suggested by Jewitt and this work. Indeed, we investigate the survival of amorphous water ice against crystallization, using a fully three-dimensional thermal evolution model. Simulations are performed for varying heliocentric distances and obliquities. They suggest that crystallization can be triggered as far as 16 AU, though amorphous ice can survive beyond 10 AU. The phase transition is an efficient source of outgassing up to 10-12 AU, which is broadly consistent with the observations of the active Centaurs. The most extreme case is 167P/CINEOS, which barely crystallizes in our simulations. However, amorphous ice can be preserved inside Centaurs in many heliocentric distance-obliquity combinations, below a {approx}5-10 m crystallized crust. We also find that outgassing due to crystallization cannot be sustained for a time longer than 10{sup 4}-10{sup 4} years, leading to the hypothesis that active Centaurs might have recently suffered from orbital changes. This could be supported by both observations (although limited) and dynamical studies.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

Rational design of a uranyl metal-organic framework for the capture and colorimetric detection of organic dyes

A new uranyl containing metal-organic framework, RPL-1: [(UO2)2(C28H18O8)] · H2O (RPL for Radiochemical Processing Laboratory), was prepared, structurally characterized, and the solid-state photoluminescence properties explored. The single crystal X-ray diffraction data reveal the structure of RPL-1 consists of two crystallographically unique three dimensional, interpenetrating nets with a 4,3-connected tbo topology. Each net contains large pores with an average width of 22.8 Å and is formed from monomeric, hexagonal bipyramidal uranyl nodes that are linked via 1,2,4,5-tetrakis(4-carboxyphenyl)benzene (TCPB) linkers. The thermal and photophysical properties of RPL-1 were investigated using thermogravimetric analysis and absorbance, fluorescence, and lifetime spectroscopies. The material displays excellent thermal stability and temperature dependent uranyl and TCBP luminescence. The framework is stable in aqueous media and due to the large void space (constituting 76% of the unit cell by volume) can sequester organic dyes, the uptake of which induces a visible change to the color of the material.

Surbella, Robert G.↗
DOE OSTI2016

Orientational ordering, buckling, and dynamic transitions for vortices interacting with a periodic quasi-one-dimensional substrate

In this study, we examine the statics and dynamics of vortices in the presence of a periodic quasi-one-dimensional substrate, focusing on the limit where the vortex lattice constant is smaller than the substrate lattice period. As a function of the substrate strength and filling factor, within the pinned state, we observe a series of order-disorder transitions associated with buckling phenomena in which the number of vortex rows that fit between neighboring substrate maxima increases. These transitions coincide with steps in the depinning threshold, jumps in the density of topological defects, and changes in the structure factor. At the buckling transition, the vortices are disordered, while between the buckling transitions the vortices form a variety of crystalline and partially ordered states. In the weak substrate limit, the buckling transitions are absent and the vortices form an ordered hexagonal lattice that undergoes changes in its orientation with respect to the substrate as a function of vortex density. At intermediate substrate strength, certain ordered states appear that are correlated with peaks in the depinning force. Under an applied drive, the system exhibits a rich variety of distinct dynamical phases, including plastic flow, a density-modulated moving crystal, and moving floating solid phases. We also find a dynamic smectic-to-smectic transition in which the smectic ordering changes from being aligned with the substrate to being aligned with the external drive. The different dynamical phases can be characterized using velocity histograms and the structure factor. We discuss how these results are related to recent experiments on vortex ordering in thin films with periodic thickness modulations. In conclusion, our results should also be relevant for other types of systems such as ions, colloids, or Wigner crystals interacting with periodic quasi-one-dimensional substrates.

36 MATERIALS SCIENCE↗
DOE OSTI2016

SU-G-JeP4-06: Evaluation of Interfractional and Intrafractional Tumor Motion in Stereotactic Liver Radiotherapy, Based On Four-Dimensional Cone-Beam Computed Tomography Using Fiducial Markers

Purpose: The purpose of this study was to evaluate the interfractional and intrafractional motion of liver tumors in stereotactic body radiation therapy (SBRT), based on four-dimensional cone-beam computed tomography using fiducial markers. (4D-CBCT). Methods: Seven patients with liver tumors were treated by SBRT with abdominal compression (AC) in five fractions with image guidance based on 4D-CBCT. The 4D-CBCT studies were performed to determine the individualized internal margin for the planning simulation. The interfractional and intrafractional changes of liver tumor motion for all patients was measured, based on the planning simulation 4D-CBCT, pre-SBRT 4D-CBCT, and post-SBRT 4D-CBCT. The interfractional motion change was calculated from the difference in liver tumor amplitude on pre-SBRT 4D-CBCT relative to that of the planning simulation 4D-CBCT for each fraction. The intrafractional motion change was calculated from the difference between the liver tumor amplitudes of the pre- and post-SBRT 4D-CBCT for each fraction. Significant interfractional and intrafractional changes in liver tumor motion were defined as a change ≥3 mm. Statistical analysis was performed using the Pearson correlation. Results: The values of the mean amplitude of liver tumor, as indicated by planning simulation 4D-CBCT, were 1.6 ± 0.8 mm, 1.6 ± 0.9 mm, and 4.9 ± 2.2 mm in the left-right (LR), anterior-posterior (AP), and superior-inferior (SI) directions, respectively. Pearson correlation coefficients between the liver tumor amplitudes, based on planning simulation 4D-CBCT, and pre-SBRT 4D-CBCT during fraction treatment in the LR, AP, and SI directions were 0.6, 0.7, and 0.8, respectively. Interfractional and intrafractional motion changes of ≥3 mm occurred in 23% and 3% of treatment fractions, respectively. Conclusion: The interfractional and intrafractional changes of liver tumor motion were small in most patients who received liver SBRT with AC. In addition, planning simulation 4D-CBCT was useful for representing liver tumor movement in patients undergoing SBRT. This work was supported by JSPS KAKENHI Grant Number 26861004.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2014

The influence of differential irradiation and circulation on the thermal evolution of gas giant planets. I. Upper limits from radiative equilibrium

As a planet ages, it cools and its radius shrinks at a rate set by the efficiency with which heat is transported from the interior out to space. The bottleneck for this transport is at the boundary between the convective interior and the radiative atmosphere; the opacity there sets the global cooling rate. Models of planetary evolution are often one dimensional (1D), such that the radiative-convective boundary (RCB) is defined by a single temperature, pressure, and opacity. In reality the spatially inhomogeneous stellar heating pattern and circulation in the atmosphere could deform the RCB, allowing heat from the interior to escape more efficiently through regions with lower opacity. We present an analysis of the degree to which the RCB could be deformed and the resultant change in the evolutionary cooling rate. In this initial work we calculate the upper limit for this effect by comparing an atmospheric structure in local radiative equilibrium to its 1D equivalent. We find that the cooling through an uneven RCB could be enhanced over cooling through a uniform RCB by as much as 10%-50%. We also show that the deformation of the RCB (and the enhancement of the cooling rate) increases with a greater incident stellar flux or a lower inner entropy. Our results indicate that this mechanism could significantly change a planet's thermal evolution, causing it to cool and shrink more quickly than would otherwise be expected. This may exacerbate the well-known difficulty in explaining the very large radii observed for some hot Jupiters.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2013

Long-term evolution of decaying magnetohydrodynamic turbulence in the multiphase interstellar medium

Supersonic turbulence in the interstellar medium (ISM) is believed to decay rapidly within a flow crossing time irrespective of the degree of magnetization. However, this general consensus of decaying magnetohydrodynamic (MHD) turbulence relies on local isothermal simulations, which are unable to take into account the roles of the global structures of magnetic fields and the ISM. Utilizing three-dimensional MHD simulations including interstellar cooling and heating, we investigate decaying MHD turbulence within cold neutral medium sheets embedded in a warm neutral medium. The early evolution of turbulent kinetic energy is consistent with previous results for decaying compressible MHD turbulence characterized by rapid energy decay with a power-law form of E∝t {sup –1} and by a short decay time compared with the flow crossing time. If initial magnetic fields are strong and perpendicular to the sheet, however, long-term evolution of the kinetic energy shows that a significant amount of turbulent energy (∼0.2E {sub 0}) still remains even after 10 flow crossing times for models with periodic boundary conditions. The decay rate is also greatly reduced as the field strength increases for such initial and boundary conditions, but not if the boundary conditions are those for a completely isolated sheet. We analyze velocity power spectra of the remaining turbulence to show that in-plane, incompressible motions parallel to the sheet dominate at later times.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Scalable graphene sensor array for real-time toxins monitoring in flowing water

Abstract Risk management for drinking water often requires continuous monitoring of various toxins in flowing water. While they can be readily integrated with existing water infrastructure, two-dimensional (2D) electronic sensors often suffer from device-to-device variations due to the lack of an effective strategy for identifying faulty devices from preselected uniform devices based on electronic properties alone, resulting in sensor inaccuracy and thus slowing down their real-world applications. Here, we report the combination of wet transfer, impedance and noise measurements, and machine learning to facilitate the scalable nanofabrication of graphene-based field-effect transistor (GFET) sensor arrays and the efficient identification of faulty devices. Our sensors were able to perform real-time detection of heavy-metal ions (lead and mercury) and E. coli bacteria simultaneously in flowing tap water. This study offers a reliable quality control protocol to increase the potential of electronic sensors for monitoring pollutants in flowing water.

47 OTHER INSTRUMENTATION↗
DOE OSTI2019

Correlation functions for a spin-(1/2) Ising-XYZ diamond chain: Further evidence for quasi-phases and pseudo-transitions

One-dimensional systems with short-range interactions cannot exhibit a long-range order at nonzero temperature. However, there are some particular one-dimensional models, such as the Ising–Heisenberg spin models with a variety of lattice geometries, which exhibit unexpected behavior similar to the discontinuous or continuous temperature-driven phase transition. Although these pseudo-transitions are not true temperature-driven transitions showing only abrupt changes or sharp peaks in thermodynamic quantities, they may be confused while interpreting experimental data. Here we consider the spin-(1/2) Ising-XYZ diamond chain in the regime when the model exhibits temperature-driven pseudo-transitions. We provide a detailed investigation of several correlation functions between distant spins that illustrates the properties of quasi-phases separated by pseudo-transitions. Inevitably, all correlation functions show the evidence of pseudo-transition, which are supported by the analytical solutions and, besides we provide a rigorous analytical investigation around the pseudo-critical temperature. It is worth to mention that the correlation functions between distant spins have an extremely large correlation length at pseudo-critical temperature.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2015

WITNESSING GAS MIXING IN THE METAL DISTRIBUTION OF THE HICKSON COMPACT GROUP HCG 31

We present for the first time direct evidence that in a merger of disk galaxies, the pre-existing central metallicities will mix as a result of gas being transported in the merger interface region along the line that joins the two coalescing nuclei. This is shown using detailed two-dimensional kinematics as well as metallicity measurements for the nearby ongoing merger in the center of the compact group HCG 31. We focus on the emission line gas, which is extensive in the system. The two coalescing cores display similar oxygen abundances. While in between the two nuclei, the metallicity changes smoothly from one nucleus to the other indicating a mix of metals in this region, which is confirmed by the high-resolution Hα kinematics (R = 45,900). This nearby system is especially important because it involves the merging of two fairly low-mass and clumpy galaxies (LMC-like galaxies), making it an important system for comparison with high-redshift galaxies.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2017

Delta-layer model for the boundary of a bubble excited by an electron bunch or laser pulse in a plasma channel

We present an analytical model of a plasma bubble excited by a relativistic electron bunch or a high-power laser pulse moving in the plasma, with allowance for a surrounding thin electron layer (delta-layer). It is shown that in calculations of accelerating and focusing fields, the electron layer at the bubble boundary, provided the layer thickness is small enough, can be considered as two-dimensional and consisting of surface charges and currents. This model is compared with the bubble model having a finite thickness of the electron layer, and it is shown that the parameter region, within which our model is valid, is small compared to the region where the effect of finite thickness is significant. On the other hand, the proposed model, representing the simplest model of a bubble in a transversely inhomogeneous plasma, allows the transition to a model with a finite thickness of the electron layer by means of changing the scales of coordinates. (paper)

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗