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At least 1,549 records · Page 86

System and Method for Providing a Climate Data Persistence Service

A system, method and computer-readable storage devices for providing a climate data persistence service. A system configured to provide the service can include a climate data server that performs data and metadata storage and management functions for climate data objects, a compute-storage platform that provides the resources needed to support a climate data server, provisioning software that allows climate data server instances to be deployed as virtual climate data servers in a cloud computing environment, and a service interface, wherein persistence service capabilities are invoked by software applications running on a client device. The climate data objects can be in various formats, such as International Organization for Standards (ISO) Open Archival Information System (OAIS) Reference Model Submission Information Packages, Archive Information Packages, and Dissemination Information Packages. The climate data server can enable scalable, federated storage, management, discovery, and access, and can be tailored for particular use cases.

Schnase, John L.↗

Developments of the EXFOR Database: Possible New Formats

The EXFOR database is a collection of experimental nuclear reaction data, maintained by the IAEA on behalf of the International Network of Nuclear Reaction Data Centres (NRDC). The format for the storage of such data was first described in 1969 and while there have been many incremental changes over the years so that the format is now capable of containing a very wide range of measurement results, there is a growing realisation that a major change is required. Consequently the IAEA Nuclear Data Section (NDS) organised a Consultant's Meeting on ‘Further Development of EXFOR’ in 2012. This was an opportunity for a range of international experts to discuss ways of improving EXFOR and while this focused on new formats there was also discussion on ways of storing new data, new output formats and software tools such as editors. This paper will discuss recent and proposed changes to enable new quantities to be stored (such as coincidence measurements and covariances), the range of output formats available (e.g. C4 and X4+) which make interaction with the data more user friendly and the possible use of XML to modernise the database.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Simultaneous disk storage and retrieval

Data are concurrently recorded on disk by one minicomputer and accessed by another, using format of memory blocks, buffering algorithm, and time-sequence addressing. Buffering algorithm works at data rates up to 68,000 words per second; modifications up rate to 160,000 words per second.

Levine, F. E.↗

Imaging spectrometry for earth remote sensing

Initial results of the novel remote earth sensing technique of imaging spectrometry, which is technically feasible from both spacecraft and aircraft platforms, indicate that the direct identification of surface materials on a picture-element basis is possible through proper sampling of absorption features in the reflectance spectrum. Sensors of this type are able to acquire images simultaneously in 100-200 contiguous spectral bands. Computerized data reduction and storage techniques are available for the large data sets thus generated, and novel analytic techniques are under development to maximize information content extraction.

Goetz, A. F. H.↗

NSSDC activities with 12-inch optical disk drives

The development status of optical-disk data transfer and storage technology at the National Space Science Data Center (NSSDC) is surveyed. The aim of the R&D program is to facilitate the exchange of large volumes of data. Current efforts focus on a 12-inch 1-Gbyte write-once/read-many disk and a disk drive which interfaces with VAX/VMS computer systems. The history of disk development at NSSDC is traced; the results of integration and performance tests are summarized; the operating principles of the 12-inch system are explained and illustrated with diagrams; and the need for greater standardization is indicated.

Lowrey, Barbara E.↗

Exploration Clinical Decision Support System: Medical Data Architecture

The Exploration Clinical Decision Support (ECDS) System project is intended to enhance the Exploration Medical Capability (ExMC) Element for extended duration, deep-space mission planning in HRP. A major development guideline is the Risk of "Adverse Health Outcomes & Decrements in Performance due to Limitations of In-flight Medical Conditions". ECDS attempts to mitigate that Risk by providing crew-specific health information, actionable insight, crew guidance and advice based on computational algorithmic analysis. The availability of inflight health diagnostic computational methods has been identified as an essential capability for human exploration missions. Inflight electronic health data sources are often heterogeneous, and thus may be isolated or not examined as an aggregate whole. The ECDS System objective provides both a data architecture that collects and manages disparate health data, and an active knowledge system that analyzes health evidence to deliver case-specific advice. A single, cohesive space-ready decision support capability that considers all exploration clinical measurements is not commercially available at present. Hence, this Task is a newly coordinated development effort by which ECDS and its supporting data infrastructure will demonstrate the feasibility of intelligent data mining and predictive modeling as a biomedical diagnostic support mechanism on manned exploration missions. The initial step towards ground and flight demonstrations has been the research and development of both image and clinical text-based computer-aided patient diagnosis. Human anatomical images displaying abnormal/pathological features have been annotated using controlled terminology templates, marked-up, and then stored in compliance with the AIM standard. These images have been filtered and disease characterized based on machine learning of semantic and quantitative feature vectors. The next phase will evaluate disease treatment response via quantitative linear dimension biomarkers that enable image content-based retrieval and criteria assessment. In addition, a data mining engine (DME) is applied to cross-sectional adult surveys for predicting occurrence of renal calculi, ranked by statistical significance of demographics and specific food ingestion. In addition to this precursor space flight algorithm training, the DME will utilize a feature-engineering capability for unstructured clinical text classification health discovery. The ECDS backbone is a proposed multi-tier modular architecture providing data messaging protocols, storage, management and real-time patient data access. Technology demonstrations and success metrics will be finalized in FY16.

Biomedical support↗

Experiences Applying Data Staging Technology in Unconventional Ways

Several efforts have shown the potential of using additional compute-area resources to enhance the IO path to storage. Efforts like data staging, IO forwarding, and similar techniques can accelerate IO performance and reduce the impact of IO time to a compute application. Hybrid staging enhanced this path by adding processing functionality to locations along the data path to storage. While these efforts have been effective, they have taken a somewhat limited view of the potential benefits using some additional compute resources can offer both to enhance a compute application as well as to offering a way to exploit HPC-style resources for non-traditional tasks. Over the last few years, we have been experimenting with the potential for other sorts of activities using a staging style approach to add or enable new functionality. The efforts in this area have yielded a collection of small projects that yield some insights into both the potential and limitations of this approach for both achieving exascale computing and for enabling alternative uses for HPC resources.

Computer Science↗

Space data management at the NSSDC (National Space Sciences Data Center): Applications for data compression

The National Space Science Data Center (NSSDC), established in 1966, is the largest archive for processed data from NASA's space and Earth science missions. The NSSDC manages over 120,000 data tapes with over 4,000 data sets. The size of the digital archive is approximately 6,000 gigabytes with all of this data in its original uncompressed form. By 1995 the NSSDC digital archive is expected to more than quadruple in size reaching over 28,000 gigabytes. The NSSDC digital archive is expected to more than quadruple in size reaching over 28,000 gigabytes. The NSSDC is beginning several thrusts allowing it to better serve the scientific community and keep up with managing the ever increasing volumes of data. These thrusts involve managing larger and larger amounts of information and data online, employing mass storage techniques, and the use of low rate communications networks to move requested data to remote sites in the United States, Europe and Canada. The success of these thrusts, combined with the tremendous volume of data expected to be archived at the NSSDC, clearly indicates that innovative storage and data management solutions must be sought and implemented. Although not presently used, data compression techniques may be a very important tool for managing a large fraction or all of the NSSDC archive in the future. Some future applications would consist of compressing online data in order to have more data readily available, compress requested data that must be moved over low rate ground networks, and compress all the digital data in the NSSDC archive for a cost effective backup that would be used only in the event of a disaster.

Green, James L.↗

Opportunities for Accelerating Research in the Cloud

As the data holdings of the Earth Observation System Data and Information System expand over the next several years, the typical data analysis process of downloading data to local compute resources will become increasingly inefficient. However, cloud computing promises to mitigate that by allowing the user to process close to the data. These improvements will be obtained via a variety of mechanisms: 1 - improving the ability of data transformation services to reduce the data prior to analysis; 2 - providing cloud-native analysis capabilities for common analysis functions; and 3 - providing the ability to work directly with data in Web Object Storage.

data system↗

SU-F-P-10: A Web-Based Radiation Safety Relational Database Module for Regulatory Compliance

Purpose: Maintaining compliance with Radioactive Materials Licenses is inherently a time-consuming task requiring focus and attention to detail. Staff tasked with these responsibilities, such as the Radiation Safety Officer and associated personnel must retain disparate records for eventual placement into one or more annual reports. Entering results and records in a relational database using a web browser as the interface, and storing that data in a cloud-based storage site, removes procedural barriers. The data becomes more adaptable for mining and sharing. Methods: Web-based code was written utilizing the web framework Django, written in Python. Additionally, the application utilizes JavaScript for front-end interaction, SQL, HTML and CSS. Quality assurance code testing is performed in a sequential style, and new code is only added after the successful testing of the previous goals. Separate sections of the module include data entry and analysis for audits, surveys, quality management, and continuous quality improvement. Data elements can be adapted for quarterly and annual reporting, and for immediate notification of user determined alarm settings. Results: Current advances are focusing on user interface issues, and determining the simplest manner by which to teach the user to build query forms. One solution has been to prepare library documents that a user can select or edit in place of creation a new document. Forms are being developed based upon Nuclear Regulatory Commission federal code, and will be expanded to include State Regulations. Conclusion: Establishing a secure website to act as the portal for data entry, storage and manipulation can lead to added efficiencies for a Radiation Safety Program. Access to multiple databases can lead to mining for big data programs, and for determining safety issues before they occur. Overcoming web programming challenges, a category that includes mathematical handling, is providing challenges that are being overcome.

61 RADIATION PROTECTION AND DOSIMETRY↗

Parallel IO Libraries for Managing HEP Experimental Data

The computing and storage requirements of the energy and intensity frontiers will grow significantly during the Run 4 & 5 and the HL-LHC era. Similarly, in the intensity frontier, with larger trig ger readouts during supernovae explosions, the Deep Underground Neutrino Experiment (DUNE) will have unique computing challenges that could be addressed by the use of parallel and accelerated dataprocessing capabilities. Most of the requirements of the energy and intensity frontier experiments rely on increasing the role of high performance computing (HPC) in the HEP community. In this presentation, we will describe our ongoing efforts that are focused on using HPC resources for the next generation HEP experiments. The HEPCCE (High Energy Physics-Center for Computational Excellence) IOS (Input/Output and Storage) group has been developing approaches to map HEP data to the HDF5 , an IO library optimized for the HPC platforms to store the intermediate HEP data. The complex HEP data products are serialized using ROOT to allow for experiment independent general mapping approaches of the HEP data to the HDF5 format. The mapping approaches can be optimized for high performance parallel IO. Similarly, simpler data can be directly mapped into the HDF5, which can also be suitable for offloading into the GPUs directly. We will present our works on both complex and simple data model models.

Bashyal, Amit↗

Real-time data reduction at 100 Tbps: Challenge and opportunity for AI-based data reduction for next-generation large-scale nuclear physics collider experiment

The modern large-scale nuclear physics (NP) experiments in high-energy particle colliders utilize streaming-readout electronics to digitize detector response at O(100) Tbps bandwidth. Prominent examples at Brookhaven National Lab (BNL) include the sPHENIX experiment at Relativistic Heavy Ion Collider (RHIC), which is under construction, and the experiments proposed for the Electron-Ion Collider (EIC), planned for the 2030s . One of the main challenges for these streaming readout systems is to manage the data rate with sufficient data reduction in real time so the end-data fit persistent storage for offline analysis, which is typically at O(1000) times smaller and O(100) Gbps. Such data reduction traditionally is achieved via real-time high level triggers, which select and save a small subset of collisions of interest. Although triggering is applicable to high energy collider experiments such as those at the Large Hardron Collider at CERN, it is insufficient for these nuclear physics experiments which study diverse collision topologies. And traditional triggering approach is inefficient to preserve the max information harvested from the operation of colliders that costs O(100)M per year to DOE. Meanwhile, in recent years, ML-based high-throughput data reduction has emerged as a promising approach to efficiently preserve max information for a given space of persistent storage, e.g. via AI data compression, feature extraction, and noise filtering.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DuoModel: Leveraging Reduced Model for Data Reduction and Re-Computation on HPC Storage

High-performance computing (HPC) applications generate large amounts of floating-point data that need to be stored and analyzed efficiently to extract the insights and advance knowledge discovery. With the growing disparities between compute and I/O, optimizing the storage stack alone may not suffice to cure the I/O problem. There has been a strong push in the HPC communities to perform data reduction before data is transmitted to storage in order to lower the I/O cost. However, as of now, neither lossless nor lossy compressors can achieve the adequate reduction ratio that is desired by applications. This paper proposes DuoModel, a new approach that leverages the similarity between the full and reduced application models, and further improve the data reduction ratio. DouModel further improves the compression ratio of state-of-the-art compressors via compressing the differences (termed as delta) between the data products of the two models. For data analytics, the high fidelity data can be re-computed by launching the reduced model and applying the compressed delta. Our evaluations confirm that DuoModel can further push the limit of data reduction while the high fidelity of data is maintained.

Luo, Huizhang (ORCID:0000000323920267)↗

Improving Progressive Retrieval for HPC Scientific Data using Deep Neural Network

As the disparity between compute and I/O on high-performance computing systems has continued to widen, it has become increasingly difficult to perform post-hoc data analytics on full-resolution scientific simulation data due to the high I/O cost. Error-bounded data decomposition and progressive data retrieval framework has recently been developed to address such a challenge by performing data decomposition before storage and reading only part of the decomposed data when necessary. However, the performance of the progressive retrieval framework has been suffering from the over-pessimistic error control theory, such that the achieved maximum error of recomposed data is significantly lower than the required error. Therefore, more data than required is fetched for recomposition, incurring additional I/O overhead. In order to tackle this issue, we propose a DNN-based progressive retrieval framework that can better identify the minimum amount of data to be retrieved. Our contributions are as follows: 1) We provide an in-depth investigation of the recently developed progressive retrieval framework; 2) We propose two designs of prediction models (named D-MGARD and E-MGARD) to estimate the amount of retrieved data size based on error bounds. 3) We evaluate our proposed solutions using scientific datasets generated by real-world simulations from two domains. Evaluation results demonstrate the effectiveness of our solution in accurately predicting the amount of retrieval data size, as well as the advantages of our solution over the traditional approach to reducing the I/O overhead. Based on our evaluation, our solution is shown to read significantly less data (5% - 40% with D-MGARD, 20% - 80% with E-MGARD).

Wang, Jinzhen↗

Combining In-situ and In-transit Processing to Enable Extreme-Scale Scientific Analysis

With the onset of extreme-scale computing, I/O constraints make it increasingly difficult for scientists to save a sufficient amount of raw simulation data to persistent storage. One potential solution is to change the data analysis pipeline from a post-process centric to a concurrent approach based on either in-situ or in-transit processing. In this context computations are considered in-situ if they utilize the primary compute resources, while in-transit processing refers to offloading computations toa set of secondary resources using asynchronous data transfers. In this paper we explore the design and implementation of three common analysis techniques typically performed on large-scale scientific simulations: topological analysis, descriptive statistics, and visualization. We summarize algorithmic developments, describe a resource scheduling system to coordinate the execution ofvarious analysis workflows, and discuss our implementation using the DataSpaces and ADIOS frameworks that support efficient data movement between in-situ and in-transit computations. Wedemonstrate the efficiency of our lightweight, flexible framework by deploying it on the Jaguar XK6 to analyze data generated by S3D, a massively parallel turbulent combustion code. Our framework allows scientists dealing with the data deluge at extreme scale to perform analyses at increased temporal resolutions, mitigate I/O costs, and significantly improve the time to insight.

Bennett, Janine C.↗

Development of guidelines for the definition of the relavant information content in data classes

The problem of experiment design is defined as an information system consisting of information source, measurement unit, environmental disturbances, data handling and storage, and the mathematical analysis and usage of data. Based on today's concept of effective computability, general guidelines for the definition of the relevant information content in data classes are derived. The lack of a universally applicable information theory and corresponding mathematical or system structure is restricting the solvable problem classes to a small set. It is expected that a new relativity theory of information, generally described by a universal algebra of relations will lead to new mathematical models and system structures capable of modeling any well defined practical problem isomorphic to an equivalence relation at any corresponding level of abstractness.

Schmitt, E.↗

Science Goal Driven Observing: A Step Towards Maximizing Science Returns and Spacecraft Autonomy

While recent missions have made great strides in the ability to autonomously monitor and react to changing health and physical status of spacecraft, little progress has been made in responding quickly to science driven events. Also, the new generation of space-based telescopes will generate data at an unprecedented rate. Yet, while on-board data processing and storage capability will increase rapidly, bandwidth for downloading data will not increase as fast and can become a significant cost of a science program. For observations of inherently variable targets and targets of opportunity, the ability to recognize early if an observation will not meet the science goals, and react accordingly, can have a major positive impact on the overall scientific returns of an observatory and on its operational costs. If the observatory can reprioritize the schedule to focus on alternate targets, discard uninteresting observations prior to downloading, or download them at a reduced resolution its overall efficiency will be dramatically increased. We are investigating and developing tools for a science goal monitoring (SGM) system. The SGM will have an interface to help capture higher-level science goals from the scientists and translate them into a flexible observing strategy that SGM can execute and monitor. SGM will then monitor the incoming data stream and interface with data processing systems to recognize significant events. When an event occurs, the system will use the science goals given it to reprioritize observations, and react appropriately and/or communicate with ground systems - both human and machine - for confirmation and/or further high priority analyses.

Jones, Jeremy↗

Science Goal Driven Observing: A Step Towards Maximizing Science Returns and Spacecraft Autonomy

In the coming decade, the drive to increase the scientific returns on capital investment and to reduce costs will force automation to be implemented in many of the scientific tasks that have traditionally been manually overseen. Thus, spacecraft autonomy will become an even greater part of mission operations. While recent missions have made great strides in the ability to autonomously monitor and react to changing health and physical status of spacecraft, little progress has been made in responding quickly to science driven events. The new generation of space-based telescopes/observatories will see deeper, with greater clarity, and they will generate data at an unprecedented rate. Yet, while onboard data processing and storage capability will increase rapidly, bandwidth for downloading data will not increase as fast and can become a significant bottleneck and cost of a science program. For observations of inherently variable targets and targets of opportunity, the ability to recognize early if an observation will not meet the science goals of variability or minimum brightness, and react accordingly, can have a major positive impact on the overall scientific returns of an observatory and on its operational costs. If the observatory can reprioritize the schedule to focus on alternate targets, discard uninteresting observations prior to downloading, or download them at a reduced resolution its overall efficiency will be dramatically increased. We are investigating and developing tools for a science goal monitoring (SGM) system. The SGM will have an interface to help capture higher-level science goals from scientists and translate them into a flexible observing strategy that SGM can execute and monitor. SGM will then monitor the incoming data stream and interface with data processing systems to recognize significant events. When an event occurs, the system will use the science goals given it to reprioritize observations, and react appropriately and/or communicate with ground systems - both human and machine - for confirmation and/or further high priority analyses.

Koratkar, Anuradha↗