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DOE OSTI2016

Microdosing and Other Phase 0 Clinical Trials: Facilitating Translation in Drug Development

A number of drivers and developments suggest that microdosing and other phase 0 applications will experience increased utilization in the near-to-medium future. Increasing costs of drug development and ethical concerns about the risks of exposing humans and animals to novel chemical entities are important drivers in favor of these approaches, and can be expected only to increase in their relevance. An increasing body of research supports the validity of extrapolation from the limited drug exposure of phase 0 approaches to the full, therapeutic exposure, with modeling and simulations capable of extrapolating even non-linear scenarios. An increasing number of applications and design options demonstrate the versatility and flexibility these approaches offer to drug developers including the study of PK, bioavailability, DDI, and mechanistic PD effects. PET microdosing allows study of target localization, PK and receptor binding and occupancy, while Intra-Target Microdosing (ITM) allows study of local therapeutic-level acute PD coupled with systemic microdose-level exposure. Applications in vulnerable populations and extreme environments are attractive due to the unique risks of pharmacotherapy and increasing unmet healthcare needs. Lastly, all phase 0 approaches depend on the validity of extrapolation from the limited-exposure scenario to the full exposure of therapeutic intent, but in the final analysis the potential for controlled human data to reduce uncertainty about drug properties is bound to be a valuable addition to the drug development process.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2020

NEON AOP Imaging Spectroscopy Survey of Upper East River Colorado Watersheds: Raw-Space Radiance and Observational Variable Dataset

Lawrence Berkeley National Laboratory (LBNL) contracted the National Ecological Observatory Network Airborne Observation Platform (NEON AOP) to observe watersheds of interest near Crested Butte, CO with remotely sensed data including imaging spectroscopy. The flight box design encompassed the watersheds, and flight design targeted a minimum of 30% overlap between adjacent flight lines. The total area surveyed was 334 km2 across 72 lines. Flight lines were oriented north-south for consistency in solar illumination geometry. Seven days were required to cover the flight area. Some areas were flown additional times to improve data quality or temporal coincidence between airborne acquisitions and field sampling. In total, 102 lines were collected and can be downloaded here: https://portal.nersc.gov/wfsfa/doi-10-15485-1617204/. The instrument used for the acquisition was an Airborne Visible-Infrared Imaging Spectrometer - Next Generation (AVIRIS-NG), which records radiance within 426 contiguous spectral bands in the wavelength range from 380 to 2510 nm. The instrument was flown at a target aboveground altitude of 1000 m for a processed data spatial resolution of 1 m. These data are non-orthorectified, radiance data that require further processing prior to use as a surface reflectance data set.

2018 NEON and 2025 CHESS Campaigns↗

DOE OSTI2021

FTICR-MS and Biochemical Transformation Data from Global Inland River Water and Sediment Associated with: "Organic Matter Transformations are Disconnected Between Surface Water and the Hyporheic Zone"

This data package is associated with the publication "Organic Matter Transformations are Disconnected Between Surface Water and the Hyporheic Zone" submitted to Biogeosciences (Stegen et al., 2022). The study aims to understand how the diversity of OM transformations varies across surface and subsurface components of river corridors using inland surface water and sediments collected along river corridors across the contiguous United States. Sediment extracts and water samples were analyzed using ultrahigh resolution Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS). This dataset is comprised of one folder (WHONDR_S19S) which contains (1) a subfolder with R scripts used to process the data and to calculate biochemical transformations, (2) processed FTICR-MS data as csv files, sample collection metadata and climate data as csv files, (3) biochemical transformations profile, classifications and database as csv files, and (4) a readme file with more information regarding WHONDRS raw FTICR-MS data and processing scripts. Outside of the main folders there is a csv containing file-level metadata and a csv data dictionary defining column headers for all csv files contained in the data package. The samples were part of a WHONDRS (https://whondrs.pnnl.gov) study. The raw, unprocessed FTICR-MS data with additional data can be found at doi:10.15485/1729719 for sediments and doi:10.15485/1603775 for water. This data package contains the processed data used in the associated manuscript.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

A Mitigation Strategy for the Prediction Inconsistency of Neural Phase Pickers

Neural phase pickers—neural networks designed and trained to pick seismic phase arrivals—have proven to be a powerful tool for developing earthquake catalogs. However, these pickers suffer from prediction inconsistency in which the results they produce change, sometimes substantially, even under a small perturbation to the input waveform. This problem has not been addressed by the developers and users of these pickers. In this study, we show how prediction inconsistency can negatively affect the completeness of earthquake catalogs developed using neural phase pickers. Further, we show that simply using a small step size for the sliding window when processing continuous waveform data and aggregating the results significantly mitigates this problem. We also highlight the importance of training datasets for increasing the consistency and other performance metrics.

58 GEOSCIENCES↗

DOE OSTI2013

"Development and Commercialization of Alternative Carbon Precursors and Conversion Technologies" (CRADA Final Report)

The overall objective of the collaborative research performed by the Oak Ridge National Laboratory (ORNL) and the Dow Chemical Company under this Cooperative Research And Development Agreement (CRADA NFE-10-02991) was to develop and establish pathways to commercialize new carbon fiber precursor and conversion technology. This technology is to produce alternative polymer fiber precursor formulations as well as scaled energy-efficient advanced conversion technology to enable continuous mode conversion to obtain carbonized fibers that are technically and economically viable in industrial markets such as transportation, wind energy, infrastructure and oil drilling applications. There have been efforts in the past to produce a low cost carbon fiber. These attempts have to be interpreted against the backdrop of the market needs at the time, which were strictly military aircraft and high-end aerospace components. In fact, manufacturing costs have been reduced from those days to current practice, where both process optimization and volume production have enabled carbon fiber to become available at prices below $20/lb. However, the requirements of the lucrative aerospace market limits further price reductions from current practice. This approach is different because specific industrial applications are targeted, most specifically wind turbine blade and light vehicle transportation, where aircraft grade carbon fiber is not required. As a result, researchers are free to adjust both manufacturing process and precursor chemistry to meet the relaxed physical specifications at a lower cost. This report documents the approach and findings of this cooperative research in alternative precursors and advanced conversion for production of cost-effective carbon fiber for energy missions. Due to export control, proprietary restrictions, and CRADA protected data considerations, specific design details and processing parameters are not included in this report.

01 COAL, LIGNITE, AND PEAT↗

DOE OSTI2019

Publication of LLNL Genomics Data to ESGF: a Technical Report for DREAM Project

We present the process used to set up several example genomic data sets within an ESGF framework. The process begins with designing a project, staging the data, and handling the necessary configuration. We describe the publication process used to ingest the datasets, in essence, all required metadata. Finally, we describe the data web service that we introduce in the DREAM project which makes these datasets available for download or exploration.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2020

November 2019 Initial Deployment of LiDAR in the H-Canyon Exhaust Tunnel

The H-Canyon Exhaust Tunnel (CAEX) structure is periodically inspected under the Structural Integrity Program using camera equipped crawlers or poles to remotely perform visual inspections. To explore the use of enhanced inspection methods a “Proof of Concept” using the Light Detection and Ranging (LiDAR) technology was performed over a 2-day period in November 2019. The purpose of the “Proof of Concept” deployment was to confirm whether a commercially available LiDAR unit could successfully operate and remotely transmit data from the tunnel CAEX environment and whether the data would provide quantitative information to establish baseline measurements. The LiDAR performance requirement was a measurement accuracy of ± 0.25-inches over a 30-foot distance. This report documents the work activities leading to the deployment, the deployment and processing of data, lessons learned from the deployment and the post data processing methods that will be applied to future deployments.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2021

KBase Silver Case Study: Determining Media Formulation Requirements for Isolation of Microbiome Constituents

KBase has powerful tools for extracting microbial genomes from metagenomes and performing phylogenomic analysis and metabolic modeling. These tools can be used to predict key media ingredients for isolating uncultured members of microbiomes. Essential to this process are high-quality genomes extracted from metagenomic assemblies, and Kbase has a tool for assessing the quality of genomes too. Below we identify growth factors for a myxobacteria ("slime bacteria") yet to be isolated from the rhizosphere of Miscanthus xgiganteus (hybrid of "Silvergrass"), cultivated at the Kellogg Biological Station in Michigan. Data was transferred with Globus from JGI-IMG. This narrative and the "KBase Gold Case Study: Can you find Delftia?" make up the Silver and Gold Narrative Set for teaching metagenomics concepts to students in the BIT 477/577 course at North Carolina State University. This tutorial will guide the user through the process of extracting and annotating high-quality genomes from a metagenomic data, performing phylogenomic analysis, building a metabolic model, and using these to predict nutrient requirments for growth and isolation of corresponding microbes.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

Analysis of Polarimetry Data with Angular Uncertainties

For a track based polarimeter, such as the Imaging X-ray Polarimetry Explorer (IXPE), the sensitivity to polarization depends on the modulation factor, which is a strong function of energy. In previous work, a likelihood method was developed that would account for this variation in order to estimate the minimum detectable polarization (MDP). That method essentially required that the position angles of individual events should be known precisely. In a separate work, however, it was shown that using a machine-learning method for measuring event tracks can generate track angle uncertainties, which can be used in the analysis. Here, the maximum likelihood method is used as a basis for revising the estimate of the MDP in a general way that can include uncertainties in event track position angles. The resultant MDP depends solely upon the distribution of track angle uncertainties present in the input data. Due to the physics of the IXPE detectors, it is possible to derive a simple relationship between these angular uncertainties and the energy-dependent modulation function as a step in the process.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2022

Ka-Band Scanning ARM Cloud Radar (KASACR), 2nd Generation CF-Radial Spectral Data, Vertically-Pointing Scan, Cross Mode (a1-level)

The Ka-Band Scanning ARM Cloud Radar (KASACR) records cloud properties. ARM's scanning cloud radars are dual-frequency, dual-polarization Doppler radars mounted on a common scanning pedestal. Each pedestal includes a Ka-band radar (2kW peak power) and the deployment location determines whether the second radar is a W-band (1.7 kW peak power) or an X-band (20 kW peak power). Beamwidths for Ka-bands paired with W-bands are roughly matched at 0.3 degrees. The X-band beamwidth is approximately 1 degree. Due to the narrow antenna beamwidth, ARM’s scanning cloud radars use scanning strategies unlike typical weather radars. Rather than focusing on plan position indicator, or PPI, scans, the KASACR uses range height indicator, or RHI, scans at numerous azimuths to obtain cloud volume data. Measurements collected with the KASACR are copolar and cross-polar radar reflectivity, Doppler velocity, spectra width and spectra when not scanning, and linear depolarization ratio. KASACR data from the 2018–2019 Cloud, Aerosol, and Complex Terrain Interactions (CACTI) field campaign in Argentina are now available as b1-level products. Building on the original CACTI operational data, the b1-level products feature improved data quality resulting from extensive analyses and corrections. The data are cross-calibrated to a common point, datastreams are corrected for operational issues that occurred during the campaign, and several data quality masks and basic derived products are incorporated. For more information, read the CACTI radar b1-level processing report.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Ka-Band Scanning ARM Cloud Radar (KASACR), 2nd Generation CF-Radial Spectral Data, Vertically-Pointing Scan, Cross-Polarization Mode (a1-level)

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2016

Self-assembly of block copolymers on topographically patterned polymeric substrates

Highly-ordered block copolymer films are prepared by a method that includes forming a polymeric replica of a topographically patterned crystalline surface, forming a block copolymer film on the topographically patterned surface of the polymeric replica, and annealing the block copolymer film. The resulting structures can be used in a variety of different applications, including the fabrication of high density data storage media. The ability to use flexible polymers to form the polymeric replica facilitates industrial-scale processes utilizing the highly-ordered block copolymer films.

36 MATERIALS SCIENCE↗

DOE OSTI2023

In situ probing of interfacial roughness and transient phases during ceramic cold sintering process

The ceramic cold sintering process (CSP) offers an eco-friendly approach to producing fully dense ceramics at low temperatures. However, an incomplete mechanistic understanding hinders its optimization and widespread adoption. In this study, we analyze the microstructural and structural changes in ZnO, a model CSP system, using in situ synchrotron-based high-energy small-angle X-ray scattering and X-ray diffraction techniques. Our results reveal the time evolution of ZnO particles' surface area and roughness, reflecting the dissolution and re precipitation processes that enable densification. The in situ measurements supply valuable kinetic data for these stages of CSP. Alongside microstructural changes and densification, we observed the evolution of secondary phases representing reaction products between ZnO and acetic acid, the solvent used. The initial ZnO/solvent mixture's dominant secondary phase is attributed to zinc acetate, which is gradually replaced by a zinc soap-type structure during CSP. This structure has a large (≈ 21 Å) lattice parameter and is assumed to have a layered nature. The formation of this soap phase, which is retained in the sintered product as an intergranular component, appears to be a signature of successful cold sintering as it facilitates mass transport, leading to densification. Here, our study underscores the potential of in situ synchrotron characterization for revealing microstructural and phase-evolution details during CSP. These findings, which would be challenging to obtain through ex situ measurements, provide crucial data to guide and validate theoretical models, ultimately enhancing CSP's effectiveness and adoption.

36 MATERIALS SCIENCE↗

DOE OSTI2024

Guest Editorial for Nondestructive Testing and Evaluation (NDT&E) Special Section

Nondestructive testing and evaluation (NDT&E) are interdisciplinary fields that require a significant amount of interconnection between fundamental physics, measurement techniques, data processing, decision making, and reporting to have a significant impact on industry. NDT&E practitioners are challenged to keep up with the fast-paced evolution of materials, structures, processing, and manufacturing technologies. The development of engineered materials, complex structures and composites, and novel forming techniques require NDT&E to rapidly evolve to meet the needs of industry.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2018

FY2017 annual report: Roll-to-Roll Advanced Materials Manufacturing DOE Laboratory Consortium Project

The following report provides a description of the program structure and technical accomplishments made during FY 2017 to overcome challenges for expanding use of R2R technologies and processing for clean energy applications. Technologies are under development that enable enhanced manufacturing of battery electrodes, fuel cells and water separation membranes that take advantage of advancements in new functional materials. Data mining, visualization, modeling and simulation for the materials, technologies and processes being developed allow for improvements in R2R manufacturing applications. This report documents the research conducted by four DOE national laboratories as a consortium in collaboration with industry partnerships. The research is directly applicable to AMM strategies that apply the National Science and Technology Council’s Materials Genome Initiative (NSTC 2011) approach to enhance the performance of battery, fuel cell and water membrane materials. This effort supports building the foundation of technologies, processes and a U.S. manufacturing base that will enable an order of magnitude in shorter process development cycles with the pathway for initial commercialization within months instead of years.

36 MATERIALS SCIENCE↗

DOE OSTI2022

Characterization and application of a high-resolution microfluidic device in atmospheric ice nucleation research and integrated science teaching

Ambient ice-nucleating particles (INPs) represent an important subset of aerosol particles that facilitate heterogeneous formation of ice crystals in the atmosphere, which can impact Earth system and energy. In this work, we developed an affordable high-resolution platform to replicate atmospheric immersion freezing through the unique capabilities of microfluidics to measure INP concentration of known ice nucleation active materials, as well as high-latitude soil samples. The new instrument produced comparable and extended freezing efficiency data for a multitude of samples over the temperature range of -5 to -35 °C as compared to an existing freezing assay within known uncertainties. Moreover, the new assay was integrated into science teaching at a primarily undergraduate and Hispanic-serving institute, contributing to fostering a deeper understanding of ice nucleation processes among college students, instilling their enthusiasm for science, and addressing the critical need for a well-informed citizenry. Student research assistants were involved in both research and pedagogical development processes. Three students from our team visited the Pacific Northwest National Laboratory to help characterize physicochemical properties of our test samples and to test modeling of atmospheric ice nucleation using a box model as well as a global climate model (E3SM) for the regional-scale conditions over the North Slope of Alaska (NSA) and Southern Great Plains (SGP). We also assessed student learning experience via hands-on training, research processes, and development of educational materials. On pre- and post-participation surveys and in exit interviews, students reported personal growth as advancements in breadth of experience, research-related skill sets, and regarding their educational and career goals. They also affirmed that the methods enacted incorporated the NASA Minority University Research and Education Program (MUREP) STEM Engagement Best Practices.

58 GEOSCIENCES↗

DOE OSTI2025

US Department of Energy, Office of Science, High-Performance Computing Facility 2024 Operational Assessment Oak Ridge Leadership Computing Facility

The Oak Ridge Leadership Computing Facility (OLCF) was established to accelerate scientific discovery by providing world-leading computational performance and advanced data infrastructure to the US Department of Energy (DOE) computing community. As a DOE Office of Science user facility, the OLCF has managed the successful deployment and operation of a succession of leadership-class resources dedicated to open science. In addition to these resources, the OLCF staff continually strive to develop innovative processes and technologies, improve security, and empower users through effective allocation management and comprehensive user support and training. These efforts support the advancement of science by the OLCF users and benefit high-performance computing (HPC) facilities around the world.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2026

Computational Workflows for Uncertainty-Quantified Nuclear Reactions: From Nuclear Theory Inputs to Astrophysical Reaction Rates

Reactions on unstable nuclei, particularly those on the neutron-rich side of stability, are important for both fundamental and applied physics. For fundamental science, the most prevalent use case is astrophysi cal nucleosynthesis by rapid neutron capture—the r-process—by which heavy nuclei are formed in extreme astrophysical environments, such as in supernovae and neutron star mergers; see, e.g., Refs. [1–3]. For ap plications, these processes are relevant for the interpretation of radiochemical data from historic nuclear tests, which contribute to our ability to certify the enduring stockpile in the absence of nuclear testing [4]; see Ref. [5] for a broader discussion of applications. However, reaction cross sections involving unsta ble species are generally poorly understood, for the simple reason that useful data become scarce as one moves away from stability. While there are avenues for improving the amount and quality of data for these species [6], one is fundamentally reliant on nuclear theory to make progress on these fields of study.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗