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At least 1,531 records · Page 85

Two-particle correlation function and dihadron correlation approach

It is shown that, in the case of asymmetric nuclear interactions, the application of the traditional dihadron correlation approach to determining a two-particle correlation function C may lead to a form distorted in relation to the canonical pair correlation function {sub C}{sup 2}. This result was obtained both by means of exact analytic calculations of correlation functions within a simple string model for proton–nucleus and deuteron–nucleus collisions and by means of Monte Carlo simulations based on employing the HIJING event generator. It is also shown that the method based on studying multiplicity correlations in two narrow observation windows separated in rapidity makes it possible to determine correctly the canonical pair correlation function C{sub 2} for all cases, including the case where the rapidity distribution of product particles is not uniform.

74 ATOMIC AND MOLECULAR PHYSICS↗

Rapidity distributions of hadrons in the HydHSD hybrid model

A multistage hybrid model intended for describing heavy-ion interactions in the energy region of the NICA collider under construction in Dubna is proposed. The model combines the initial, fast, interaction stage described by the model of hadron string dynamics (HSD) and the subsequent evolution that the expanding system formed at the first stage experiences at the second stage and which one treats on the basis of ideal hydrodynamics; after the completion of the second stage, the particles involved may still undergo rescattering (third interaction stage). The model admits three freeze-out scenarios: isochronous, isothermal, and isoenergetic. Generally, the HydHSD hybrid model developed in the present study provides fairly good agreement with available experimental data on proton rapidity spectra. It is shown that, within this hybrid model, the two-humped structure of proton rapidity distributions can be obtained either by increasing the freeze-out temperature and energy density or by more lately going over to the hydrodynamic stage. Although the proposed hybrid model reproduces rapidity spectra of protons, it is unable to describe rapidity distributions of pions, systematically underestimating their yield. It is necessary to refine the model by including viscosity effects at the hydrodynamic stage of evolution of the system and by considering in more detail the third interaction stage.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

A new perspective on nonrelativistic gravity

The geometric reformulation of Newton’s gravity is known as Newton-Cartan theory. We compare the traditional derivation of this theory with a new, algebraic derivation, based on the gauging of a centrally extended Galilean symmetry algebra. In this comparison the role of the central charge gauge field will be explained. In particular, we show that the scalar potential following from this procedure coincides with the one given by the theory of Cartan. Our procedure can be generalized to describe other nonrelativistic limits of gravity involving gravitating strings.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

On the variational noncommutative poisson geometry

We outline the notions and concepts of the calculus of variational multivectors within the Poisson formalism over the spaces of infinite jets of mappings from commutative (non)graded smooth manifolds to the factors of noncommutative associative algebras over the equivalence under cyclic permutations of the letters in the associative words. We state the basic properties of the variational Schouten bracket and derive an interesting criterion for (non)commutative differential operators to be Hamiltonian (and thus determine the (non)commutative Poisson structures). We place the noncommutative jet-bundle construction at hand in the context of the quantum string theory.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Stringy differential geometry for double field theory, beyond Riemann

While the fundamental object in Riemannian geometry is a metric, closed string theories call for us to put a two-form gauge field and a scalar dilaton on an equal footing with the metric. Here we propose a novel differential geometry which treats the three objects in a unified manner, manifests not only diffeomorphism and one-form gauge symmetry but also O (D, D ) T-duality, and enables us to rewrite the known low energy effective action of them as a single term. We comment that the notion of cosmological constant naturally changes.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

What tells gravity on the shape and size of an electron

Gravitational field of an electron, fixed by experimental values of its mass, spin, charge and magnetic moment, is given by the metric of Kerr-Newman (KN) solution. Unexpectedly, this metric contains a singular ring of the Compton radius, which should be regulated resulting in a weeak and smooth source. The consistent source takes the form of an oblate vacuum bubble, bounded by a closed string of the Compton radius. The bubble turns out to be relativistically rotating and should be filled by a coherently oscillating Higgs field in a false vacuum state.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

An optimized FM-index library for nucleotide and amino acid search

Abstract Background Pattern matching is a key step in a variety of biological sequence analysis pipelines. The FM-index is a compressed data structure for pattern matching, with search run time that is independent of the length of the database text. Implementation of the FM-index is reasonably complicated, so that increased adoption will be aided by the availability of a fast and flexible FM-index library. Results We present AvxWindowedFMindex (AWFM-index), a lightweight, open-source, thread-parallel FM-index library written in C that is optimized for indexing nucleotide and amino acid sequences. AWFM-index introduces a new approach to storing FM-index data in a strided bit-vector format that enables extremely efficient computation of the FM-index occurrence function via AVX2 bitwise instructions, and combines this with optional on-disk storage of the index’s suffix array and a cache-efficient lookup table for partial k-mer searches. The AWFM-index performs exact match count and locate queries faster than SeqAn3’s FM-index implementation across a range of comparable memory footprints. When optimized for speed, AWFM-index is $$\sim $$ ∼ 2–4x faster than SeqAn3 for nucleotide search, and $$\sim $$ ∼ 2–6x faster for amino acid search; it is also $$\sim $$ ∼ 4x faster with similar memory footprint when storing the suffix array in on-disk SSD storage. Conclusions AWFM-index is easy to incorporate into bioinformatics software, offers run-time performance parameterization, and provides clients with FM-index functionality at both a high-level (count or locate all instances of a query string) and low-level (step-wise control of the FM-index backward-search process). The open-source library is available for download at https://github.com/TravisWheelerLab/AvxWindowFmIndex.

59 BASIC BIOLOGICAL SCIENCES↗

A Maximally Supersymmetric Kondo Model

We study the maximally supersymmetric Kondo model obtained by adding a fermionic impurity to N = 4 supersymmetric Yang-Mills theory. While the original Kondo problem describes a defect interacting with a free Fermi liquid of itinerant electrons, here the ambient theory is an interacting CFT, and this introduces qualitatively new features into the system. The model arises in string theory by considering the intersection of a stack of M D5-branes with a stack of N D3-branes, at a point in the D3 worldvolume. We analyze the theory holographically, and propose a dictionary between the Kondo problem and antisymmetric Wilson loops in N = 4 SYM. We perform an explicit calculation of the D5 fluctuations in the D3 geometry and determine the spectrum of defect operators. This establishes the stability of the Kondo fixed point together with its basic thermodynamic properties. Known supergravity solutions for Wilson loops allow us to go beyond the probe approximation: the D5s disappear and are replaced by three-form flux piercing a new topologically non-trivial S3 in the corrected geometry. This describes the Kondo model in terms of a geometric transition. A dual matrix model reflects the basic properties of the corrected gravity solution in its eigenvalue distribution.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Theoretical Studies in Elementary Particle Physics

This final report summarizes work at Penn State University from June 1, 1990 to April 30, 2012. The work was in theoretical elementary particle physics. Many new results in perturbative QCD, in string theory, and in related areas were obtained, with a substantial impact on the experimental program.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

High Energy Theory Workshops and Visitors at the Michigan Center for Theoretical Physics FY15

The String theory workshop was held from March 4-7, 2015 on the University of Michigan campus. Local organizers were Gordon Kane and Aaron Pierce. Piyush Kumar (Yale), Jim Halverson (KITP), Bobby Acharya (ICTP) and Sven Krippendorf (Oxford) served as external organizers.The meeting focused on the status of work to project 10 or 11 dimensional string/M theories onto our 4 spacetime dimensions (compactification). The workshop had 31 participants, half from outside the U.S. Participants were encouraged to focus on predictions for recent and forthcoming data, particularly for Higgs physics and LHC and dark matter, rather than on the traditional approach of embedding the Standard Model particles and forces. The Higgs boson sympoosium was locally organized by James Wells (chair), Aaron Pierce and Jianming Qian. Additional input in the early stages by Stefan Pokorski (Warsaw) who was unable to attend in the end. The workshop consistent of 22 talks from experts around the world, both theoretical and experimental. Experimentalists summarized the current state of knowledge of the Higgs boson and its varients. The theory talks ranged from technical calculations of Standard Model processes to speculative novel ideas. The YHET visitor program invited weekly young visitors to the University of Michigan campus to present their work. This year 24 participants came under the program, with 17 of them receiving at least partial support for their visits.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Texas A&M University in the JET Collaboration - Final Report

This final report summarizes the work done by PIs at Texas A&M University within the JET Topical Collaboration. The main focus of the group at Texas A&M has been the development and implementation of a hadronization model suitable to calculate hadronization of jet showers in heavy ion collisions event by event. The group successfully developed a hybrid model of parton recombination and remnant string fragmentation including recombination with thermal partons. A code realizing this model was developed and shared with other JET members. In addition, the group at Texas A&M worked on both open and hidden heavy flavor probes. In particular, they developed a description of heavy flavor hadronization based on recombination, and consistent with in-medium scattering rates of heavy quarks, and suggested the D s meson as a precise probe of the hadronization mechanism. Another noteworthy focus of their work was electromagnetic probes, in particular, dileptons and photons from interactions of jets with the medium. In the soft sector the group has made several contributions to modern topics, e.g. the splitting of elliptic flow between isospin partners and the role of the initial strong gluon fields.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Final Project Report for DOE Grant NO.: DE-SC0010534 Period: Sept 2013-March 31, 2016

Higher spin theories has been an active area of research in recent years. One of the main research activities of the PI Murat Gunaydin over the period of this grant has been the application of quasiconformal methods to construct and study higher spin (HS) algebras and superalgebras in various dimensions. Over the past decade work on amplitudes in gauge theories, supergravity and string theories has been a very active area of research. Enormous progress has been made in the understanding of the structure of amplitudes in these theories. The novel methods and results obtained have made it possible to do calculations in gauge theories and supergravity theories that go well beyond the calculations one can do using the old-fashioned Feynman diagram techniques. Work on amplitudes in matter-coupled supergravity theories has been the second main focus of the PI during the funding period. The previous work of the PI on supergravity theories has played a fundamentally important role in the current work on amplitudes.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Dynamic Reconfiguration of Switchgrass Proteomes in Response to Rust ( Puccinia novopanici ) Infection

Switchgrass (Panicum virgatum L.) can be infected by the rust pathogen (Puccinia novopanici) and results in lowering biomass yields and quality. Label-free quantitative proteomics was conducted on leaf extracts harvested from non-infected and infected plants from a susceptible cultivar (Summer) at 7, 11, and 18 days after inoculation (DAI) to follow the progression of disease and evaluate any plant compensatory mechanisms to infection. Some pustules were evident at 7 DAI, and their numbers increased with time. However, fungal DNA loads did not appreciably change over the course of this experiment in the infected plants. In total, 3830 proteins were identified at 1% false discovery rate, with 3632 mapped to the switchgrass proteome and 198 proteins mapped to different Puccinia proteomes. Across all comparisons, 1825 differentially accumulated switchgrass proteins were identified and subjected to a STRING analysis using Arabidopsis (A. thaliana L.) orthologs to deduce switchgrass cellular pathways impacted by rust infection. Proteins associated with plastid functions and primary metabolism were diminished in infected Summer plants at all harvest dates, whereas proteins associated with immunity, chaperone functions, and phenylpropanoid biosynthesis were significantly enriched. At 18 DAI, 1105 and 151 proteins were significantly enriched or diminished, respectively. Many of the enriched proteins were associated with mitigation of cellular stress and defense.

59 BASIC BIOLOGICAL SCIENCES↗

Stringy Bubbles Solve de Sitter Troubles

Finding four-dimensional de Sitter spacetime solutions in string theory has been a vexing quest ever since the discovery of the accelerating expansion of the universe. Building on a recent analysis of bubble-nucleation in the decay of (false-vacuum) AdS backgrounds where the interfacing bubbles themselves exhibit a de Sitter geometry we show that this resonates strongly with a stringy cosmic brane construction that naturally provides for an exponential mass-hierarchy and the localization of both gravity and matter, in addition to an exponentially suppressed positive cosmological constant. Finally, we argue that these scenarios can be realized in terms of a generalization of a small resolution of a conifold singularity in the context of a (Lorentzian) Calabi–Yau 5-fold, where the isolated (Lorentzian) two complex dimensional Fano variety is a four-dimensional de Sitter spacetime.

79 ASTRONOMY AND ASTROPHYSICS↗

Cluster Configuration Spaces of Finite Type

For each Dynkin diagram $D$, we define a ''cluster configuration space'' ${\mathcal{M}}_D$ and a partial compactification ${\widetilde {\mathcal{M}}}_D$. For $D = A_{n-3}$, we have ${\mathcal{M}}_{A_{n-3}} = {\mathcal{M}}_{0,n}$, the configuration space of $n$ points on ${\mathbb P}^1$, and the partial compactification ${\widetilde {\mathcal{M}}}_{A_{n-3}}$ was studied in this case by Brown. The space ${\widetilde {\mathcal{M}}}_D$ is a smooth affine algebraic variety with a stratification in bijection with the faces of the Chapoton-Fomin-Zelevinsky generalized associahedron. The regular functions on ${\widetilde {\mathcal{M}}}_D$ are generated by coordinates $u_\gamma$, in bijection with the cluster variables of type $D$, and the relations are described completely in terms of the compatibility degree function of the cluster algebra. As an application, we define and study cluster algebra analogues of tree-level open string amplitudes.

97 MATHEMATICS AND COMPUTING↗

Light-Front Holographic QCD

The relation between the hadronic short-distance constituent quark and gluon particle limit and the long-range confining domain is yet one of the most challenging aspects of particle physics due to the strong coupling nature of Quantum Chromodynamics, the fundamental theory of the strong interactions. The central question is how one can compute hadronic properties from first principles; i.e., directly from the QCD Lagrangian. The most successful theoretical approach thus far has been to quantize QCD on discrete lattices in Euclidean space-time. Lattice numerical results follow from computation of frame-dependent moments of distributions in Euclidean space and dynamical observables in Minkowski spacetime, such as the time-like hadronic form factors, are not amenable to Euclidean lattice computations. The Dyson-Schwinger methods have led to many important insights, such as the infrared fixed point behavior of the strong coupling constant, but in practice, the analyses are limited to ladder approximation in Landau gauge. Baryon spectroscopy and the excitation dynamics of nucleon resonances encoded in the nucleon transition form factors can provide fundamental insight into the strong-coupling dynamics of QCD. New theoretical tools are thus of primary interest for the interpretation of the results expected at the new mass scale and kinematic regions accessible to the JLab 12 GeV Upgrade Project. The AdS/CFT correspondence between gravity or string theory on a higher-dimensional anti-de Sitter (AdS) space and conformal field theories in physical space-time has led to a semiclassical approximation for strongly-coupled QCD, which provides physical insights into its nonperturbative dynamics. The correspondence is holographic in the sense that it determines a duality between theories in different number of space-time dimensions. This geometric approach leads in fact to a simple analytical and phenomenologically compelling nonperturbative approximation to the full light-front QCD Hamiltonian 'Light-Front Holography'. Light-Front Holography is in fact one of the most remarkable features of the AdS/CFT correspondence. The Hamiltonian equation of motion in the light-front (LF) is frame independent and has a structure similar to eigenmode equations in AdS space. This makes a direct connection of QCD with AdS/CFT methods possible. Remarkably, the AdS equations correspond to the kinetic energy terms of the partons inside a hadron, whereas the interaction terms build confinement and correspond to the truncation of AdS space in an effective dual gravity approximation. One can also study the gauge/gravity duality starting from the bound-state structure of hadrons in QCD quantized in the light-front. The LF Lorentz-invariant Hamiltonian equation for the relativistic bound-state system is P{sub {mu}}P{sup {mu}}|{psi}(P)> = (P{sup +}P{sup -} - P{sub {perpendicular}}{sup 2})|{psi}(P)> = M{sup 2}|{psi}(P)>, P{sup {+-}} = P{sup 0} {+-} P{sup 3}, where the LF time evolution operator P{sup -} is determined canonically from the QCD Lagrangian. To a first semiclassical approximation, where quantum loops and quark masses are not included, this leads to a LF Hamiltonian equation which describes the bound-state dynamics of light hadrons in terms of an invariant impact variable {zeta} which measures the separation of the partons within the hadron at equal light-front time {tau} = x{sup 0} + x{sup 3}. This allows us to identify the holographic variable z in AdS space with an impact variable {zeta}. The resulting Lorentz-invariant Schroedinger equation for general spin incorporates color confinement and is systematically improvable. Light-front holographic methods were originally introduced by matching the electromagnetic current matrix elements in AdS space with the corresponding expression using LF theory in physical space time. It was also shown that one obtains identical holographic mapping using the matrix elements of the energy-momentum tensor by perturbing the AdS metric around its static solution. A gravity dual to QCD is not known, but the mechanisms of confinement can be incorporated in the gauge/gravity correspondence by modifying the AdS geometry in the large infrared (IR) domain z {approx} 1 = {Lambda}{sub QCD}, which also sets the scale of the strong interactions. In this simplified approach we consider the propagation of hadronic modes in a fixed effective gravitational background asymptotic to AdS space, which encodes salient properties of the QCD dual theory, such as the ultraviolet (UV) conformal limit at the AdS boundary, as well as modifications of the background geometry in the large z IR region to describe confinement. The modified theory generates the point-like hard behavior expected from QCD, instead of the soft behavior characteristic of extended objects.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗