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At least 1,531 records · Page 85

multiPhATE: bioinformatics pipeline for functional annotation of phage isolates

To address the need for improved phage annotation tools that scale, we created an automated throughput annotation pipeline: multiple-genome Phage Annotation Toolkit and Evaluator (multiPhATE). multiPhATE is a throughput pipeline driver that invokes an annotation pipeline (PhATE) across a user-specified set of phage genomes. This tool incorporates a de novo phage gene calling algorithm and assigns putative functions to gene calls using protein-, virus- and phage-centric databases. multiPhATE’s modular construction allows the user to implement all or any portion of the analyses by acquiring local instances of the desired databases and specifying the desired analyses in a configuration file. We demonstrate multiPhATE by annotating two newly sequenced Yersinia pestis phage genomes. Within multiPhATE, the PhATE processing pipeline can be readily implemented across multiple processors, making it adaptable for throughput sequencing projects. Software documentation assists the user in configuring the system.

59 BASIC BIOLOGICAL SCIENCES↗

Permafrost Thaw, Uneven Subsidence and Projected Drying of Ice-wedge Polygon Tundra: Modeling Archive

This dataset is a model archive of the paper Permafrost Thaw, Uneven Subsidence and Projected Drying of Ice-wedge Polygon Tundra (in prep) to support a modeling study investigating how projected increases in Arctic temperature and precipitation will jointly influence hydrologic conditions in ice-rich tundra landscapes. With this dataset, this study is to address the research question: Will Arctic tundra landscapes become wetter or drier with increasing precipitation and temperature in the future when thaw-induced ground subsidence and associated microtopographic evolution are represented? The simulations focus on ice-wedge polygon tundra, a widespread form of ice-rich permafrost terrain that is highly sensitive to thaw-driven landscape change. This dataset contains model input and output data for four study watersheds in Alaska: Anaktuvuk, Utqiagvik (formerly Barrow), Brooks Foothills, and Prudhoe Bay. Simulations were performed using the Advanced Terrestrial Simulator (ATS, v1.5), a physics-rich integrated surface–subsurface hydrologic model. For each watershed, ten modeling cases were performed representing two landscape evolution conditions (with subsidence and without subsidence) combined with five climate forcing scenarios derived from Shared Socioeconomic Pathways (SSP5, SSP5 with precipitation trend, SSP2, SSP2 with precipitation trend, and SSP2 with double precipitation trend). Particularly, for each watershed under the forcing SSP2 with precipitation trend, there are two additional simulations considering spatially heterogeneous subsidence distributions: one assumes randomly distributed scaling and the other includes elevation dependent distribution scaling. These simulations span 1980–2099 and include spin-up runs (1980–2009) followed by transient projections (2010–2099). To facilitate reproducibility of simulations, all datasets are organized by watershed. For each study watershed, the dataset contains: (1) Pre-partitioned mesh files for 32-core modeling (.par.32.XX), located in EACH_WATERSHED/mesh/basin; and also a non-partitioned mesh file (.exo) located in EACH_WATERSHED/mesh; (2) Climate forcings corresponding to the five SSP scenarios (.h5), located in EACH_WATERSHED/data; (3) Final states (.h5) from column spin-up modeling used to initialize historical watershed-scale spin-up runs from 1980 to 2009, located in EACH_WATERSHED/PreSpinupHistorical; (4) Final states (.h5) of historical watershed-scale spin-up runs from 1980 to 2009 used to initialize projection runs, located in EACH_WATERSHED/Spinup_daymetERA5; (5) ATS modeling input files (.xml), located in EACH_WATERSHED/EACH_SIMULATION_SCENARIO/inputfiles; (6) ATS modeling output files (.dat), located in in EACH_WATERSHED/EACH_SIMULATION_SCENARIO/combined_obs; (7) For the Brooks Foothills watershed, additional spatial model outputs are provided (.h5) for selected years (2033 and 2093) used to generate spatial figures in this study, located in Brooksfoothills/EACH_SIMULATION_SCENARIO/results-WITH/WITHOUT_SUBSIDENCE-year2033/2093. All data files with suffix .h5 can be accessible through Python h5py, and all data files with suffix of .dat can be imported by Python pandas. Mesh file with .exo can be visualized through Paraview or read by Python netCDF. The Next-Generation Ecosystem Experiments in the Arctic (NGEE Arctic) project is a research effort to reduce uncertainty in the Department of Energy’s Energy Exascale Earth System Model (E3SM) by developing a predictive understanding of Arctic tundra ecosystems underlain by permafrost and to quantify feedbacks from the Arctic tundra to the Earth system. NGEE Arctic is supported by the Department of Energy's Office of Biological and Environmental Research. Over Phases 1–3, observations made by the NGEE Arctic team across a gradient of permafrost landscapes in Arctic Alaska improved the representation of tundra processes in the land surface component of E3SM (the E3SM Land Model, ELM). Model improvements emphasized unique aspects of permafrost environments and explored reductions in model complexity while retaining predictive power. The Arctic-informed ELM developed by NGEE Arctic has been used to make novel predictions on processes ranging from permafrost thaw to soil biogeochemical cycling to Earth system feedbacks associated with the unique characteristics of tundra plants. In Phase 4, the NGEE Arctic team is evaluating our new predictive understanding under novel conditions across the Arctic domain. In collaboration with partners at long-term pan-Arctic research sites we are examining whether an Arctic-informed ELM can faithfully simulate interactions among surface and subsurface processes at site, regional, and pan-Arctic scales. In turn, we are using variety of tools to dynamically extend and evaluate ELM inference, with an emphasis on data synthesis and pan-Arctic model evaluation, reintegration of code with an evolving E3SM, scaling across heterogeneous Arctic landscapes, and the appropriate representation of the impacts of increasingly frequent Arctic disturbances.

EARTH SCIENCE > ATMOSPHERE > PRECIPITATION↗

2017 Site Environmental Report Brookhaven National Laboratory Volume 1

Brookhaven National Laboratory (BNL) is managed on behalf of the Department of Energy (DOE) by Brookhaven Science Associates (BSA), a partnership between the Research Foundation for the State University of New York on behalf of Stony Brook University and Battelle. For almost 70 years, the Laboratory has played a lead role in the DOE Science and Technology mission and continues to contribute to the DOE missions in energy resources, environmental quality, and national security. BNL manages its world-class scientific research with particular sensitivity to environmental issues and community concerns. The Laboratory’s Environmental, Safety, Security and Health (ESSH) Policy reflects the commitment of BNL’s management to fully integrate environmental stewardship into all facets of its mission and operations. BNL prepares an annual Site Environmental Report (SER) in accordance with DOE Order 231.1B, Environment, Safety and Health Reporting. The report is written to inform the public, regulators, employees, and other stakeholders of the Laboratory’s environmental performance during the calendar year in review. Volume I of the SER summarizes environmental data; environmental management performance; compliance with applicable DOE, federal, state, and local regulations; and performance in restoration and surveillance monitoring programs. BNL has prepared annual SERs since 1971 and has documented nearly all of its environmental history since the Laboratory’s inception in 1947. Volume II of the SER, the Groundwater Status Report, also is prepared annually to report on the status of groundwater protection and restoration efforts.Volume II includes detailed technical summaries of groundwater data and treatment system operations and is intended for regulators and other technically oriented stakeholders. A brief summary of the information contained in Volume II is included in Chapter 7, Groundwater Protection, of this volume. Both reports are available in print and as downloadable files on the BNL web page at https:// www.bnl.gov/esh/env/ser/.

54 ENVIRONMENTAL SCIENCES↗

A tale of two tools: mcres.py, a stochastic resonance generator, and grokres.py, a resonance quality assurance tool

We detail two software tools, now integrated into the fudge code system. The first tool, mcres.py, can be used to generate stochastic ensembles of resonances which are both consistent with the expectations of the Gaussian Orthogonal Ensemble of Random Matrix Theory and with the level densities and widths encoded in ENDF formatted files. The second tool, grokres.py, can be used to assess global and local features of sequences of resonances found in ENDF files and make comparisons to known results from Random Matrix Theory. We apply these tools to 54 Fe and other nuclei.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Considerations for NSLS-II Synchrotron Radiation Protection When Operating Damping Wigglers at Low Machine Energy

The NSLS-II storage ring vacuum chamber, including frontends (FE) and beamlines (BL), is protected from possible damage from synchrotron radiation (SR) emitted from insertion devices (IDs) by a dedicated active interlock system (AIS). The system monitors electron beam position and angle and triggers a beam dump if the beam orbit is outside of the active interlock envelope (AIE). The AIE was calculated under the assumptions of 3 GeV beam energy and ID gaps set to their minimum operating values (i.e. “fully closed”). Recently it was proposed to perform machine studies that would ramp the stored beam energy significantly below the nominal operational value of 3 GeV. These studies may potentially include the use of NSLS-II damping wigglers (DWs) for electron beam emittance reduction and control. These DWs have the minimum operating gap of g min =15 mm with the corresponding peak magnetic field B 0 =1.8 T. During regular machine operations or studies at 3 GeV, DWs are usually held at this minimum gap (thus maximum field), or, alternatively, they are fully opened to the gap of 150 mm, which corresponds to a negligible residual magnetic field. However, any intermediate values of wiggler gap can be easily set through the control system with micron level precision, so wiggler fields in the range of 0< B < B 0 can be precisely set and maintained. For the low energy studies two likely modes of DW operation must be considered: 1) the maximum allowable wiggler filed is proportional to the storage ring energy, B ( E )= B 0 E /E 0 ; and 2) the maximum allowable wiggler field (and thus the minimum allowable gap) is energy independent and is equal to its nominal 3 GeV value of 1.8 T (i.e. wiggler gap is fixed at 15 mm). The aim of this technical note is to consider the synchrotron radiation protection (SRP) implications of DW use during low energy machine studies, when DWs are operated in either of these two modes. For consistency with earlier SRP documents we will quote all the powers and power densities at the nominal NSLS-II design beam current of 500 mA, even though the low energy studies will be done at significantly lower beam currents, hence the SR power will be proportionally smaller.

36 MATERIALS SCIENCE↗

ESH-ASI-2021-004 DOE Annual Letter (redacted markings)

File LLNL2020_DOE_GI_ANNUAL.txt was submitted electronically to the REIRS file submission. The file contains positive and zero doses for 3,308 Lawrence Livermore National Security (LLNS) and subcontractor employees. There were 96 individuals with a collective Total Effective Dose (TED) of 6,886 mrem. The 2020 data follow the DOE Radiation Exposure Monitoring Systems (REMS) format per instructions in the REMS Reporting Guide.

61 RADIATION PROTECTION AND DOSIMETRY↗

Energy Equity Opportunities in Distributed Wind Hybrid Systems for Rural Loads

Distributed wind (DW) hybrid systems, or combinations of distributed energy resources with wind technologies, have the potential to provide energy equity benefits for rural loads. However, project developers and end-users do not understand these benefits well. This report outlines energy equity opportunities that result directly from DW-hybrid projects and proposes a framework that demonstrates how to consider equity in the DW-hybrid system, which can enhance existing resilience and valuation tools by incorporating a way to include equity considerations. Energy equity opportunities achievable with DW-hybrid systems for rural loads are defined by the core principles of energy justice for use in a proposed equity framework. As well, a catalog of equity resources, metrics, technology-agnostic frameworks, and best practices are linked in an attached Excel file. Electric cooperatives, technical assistance providers (including national laboratory and DOE staff), DW project developers, and technology providers can use this work to understand, evaluate, and define equitable outcomes for potential DW-hybrid projects.

17 WIND ENERGY↗

Data Associated with "Identifying Suitable Front Contacts for High-Efficiency Cd(Se,Te) Solar Cells on Space-Qualified Cover Glass"

This is data associated with the publication " Identifying Suitable Front Contacts for High-Efficiency Cd(Se,Te) Solar Cells on Space-Qualified Cover Glass " by Aesha P. Patel, Ryan Muzzio, Matthew R. Young, Robert Morrissey, Suresh Chaulagain, B. Edward Sartor, Prabodika N. Kaluarachchi, Christian Velez, Joshua A. Brown, Joel N. Duenow, Stephen Glynn, Michael J. Heben, Zhaoning Song, Nikolas J. Podraza, Adam B. Phillips, Randy J. Ellingson, Matthew O. Reese. All data associated with each figure in the manuscript and supplementary should be available in this dataset. A readme file is also included to provide some guidance. Abstract: Deployment of photovoltaics in space requires devices that combine high-efficiency, low areal mass, and resilience to harsh environments. Historically, high-efficiency multijunction III–V materials have dominated space power systems; however, their high cost and limited manufacturing throughput motivate the exploration of scalable alternatives. While CdTe-based thin-film photovoltaics offer an attractive option, their performance on non-conventional substrates can suffer from front-contact instability under higher-temperature processing. Here, the role of front-contact chemistry in limiting cell performance is investigated using CdTe-based devices fabricated on 150 μm thick Ceria-doped space-qualified 0214 Corning glass. A matrix of four transparent conducting oxides (TCOs: CTO, AZO, ITO, IZO) combined with two n-type emitters (MZO, IGO) reveals chemical stability at the front interface—rather than absorber composition alone—governs recombination losses, voltage deficits, and device reproducibility. Chemically stable front-contact combinations suppress elemental diffusion and interfacial degradation, resulting in significantly improved carrier lifetimes and junction quality. These insights are validated through record-certified Cd(Se,Te) cell efficiencies of 18.4% under AM1.5G and 16.2% under AM0 illumination on ultra-thin glass. Beyond CdTe, this work provides a general framework for the rational selection of TCO/emitter interfaces in superstrate thin-film photovoltaics, including emerging technologies like metal halide perovskites, while enabling high-efficiency, lightweight photovoltaics for space applications.

14 SOLAR ENERGY↗

Systems and methods for enhanced power system model validation

A system for enhanced power system model validation is provided. The system includes a computing device including at least one processor in communication with at least one memory device. The at least one processor is programmed to store a plurality of models for a plurality of devices and a plurality of input files associated with the plurality of models, receive, from a user, a selection of model of the plurality of models to simulate, retrieve one or more input files of the plurality of input files, perform a model validity check on the selected model, if the selected model passed the model validity check, perform a model calibration on the selected model, and if the selected model passed the model calibration, perform a post evaluation on the selected model.

Wang, Honggang↗

NGEE Arctic Rainfall Simulator Validation Data from Los Alamos National Laboratory, New Mexico, Summer 2022

Experiments evaluating the uniformity and intensity of rainfall produced by the NGEE Arctic Rainfall Simulator (NARS) were conducted at Los Alamos National Laboratory, New Mexico, over summer 2022. Petri dishes were placed in a grid within the NARS plot. Simulated rainfall was collected in each petri dish and the intensity and uniformity of the simulator was subsequently calculated. This data package contains two .csv files, one that summarizes the rainfall intensity and uniformity for each experiment, the other that contains individual petri dish water volume and intensity for each plot location and experiment. The Python scripts to control NARS are also included. The NGEE Arctic Rainfall Simulator (NARS) is a variable intensity rainfall simulator (RFS) with a frame design based on the Humphry et al. (2002) RFS and a water delivery system based on the Walnut Gulch (Paige et al., 2004) RFS. The NARS uses an aluminum frame that is fully deconstructable for transportation to field locations and a water system that enables variable rain intensity. Rain intensity control and data collection are automated using a Raspberry Pi microcomputer. The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a 15-year research effort (2012-2027) to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

Beyond the single-file fluid limit using transfer matrix method: Exact results for confined parallel hard squares

We extend the transfer matrix method of one-dimensional hard core fluids placed between confining walls for that case where the particles can pass each other and at most two layers can form. We derive an eigenvalue equation for a quasi-one-dimensional system of hard squares confined between two parallel walls, where the pore width is between σ and 3σ (σ is the side length of the square). The exact equation of state and the nearest neighbor distribution functions show three different structures: a fluid phase with one layer, a fluid phase with two layers, and a solid-like structure where the fluid layers are strongly correlated. The structural transition between differently ordered fluids develops continuously with increasing density, i.e., no thermodynamic phase transition occurs. The high density structure of the system consists of clusters with two layers which are broken with particles staying in the middle of the pore.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Chemical Management System (CMS) v. 1.0

CMS is a Windows application for tracking chemical inventories. Partners will use this application to record chemicals that are stored on their site and to perform periodic inventories of those chemicals. The application records information about stored chemicals from user input via the keyboard and barcode readers and stores that information into a single-file database (SQLite). A simple user login mechanism is used to control access to functions in the application. A user interface is provided that allows users to search the database and update data in the database.

Humphrey, Walter R.↗

SU-D-BRD-07: Automatic Patient Data Audit and Plan Quality Check to Support ARIA and Eclipse

Purpose: To ensure patient safety and treatment quality in RT departments that use Varian ARIA and Eclipse, we developed a computer software system and interface functions that allow previously developed electron chart checking (EcCk) methodologies to support these Varian systems. Methods: ARIA and Eclipse store most patient information in its MSSQL database. We studied the contents in the hundreds database tables and identified the data elements used for patient treatment management and treatment planning. Interface functions were developed in both c-sharp and MATLAB to support data access from ARIA and Eclipse servers using SQL queries. These functions and additional data processing functions allowed the existing rules and logics from EcCk to support ARIA and Eclipse. Dose and structure information are important for plan quality check, however they are not stored in the MSSQL database but as files in Varian private formats, and cannot be processed by external programs. We have therefore implemented a service program, which uses the DB Daemon and File Daemon services on ARIA server to automatically and seamlessly retrieve dose and structure data as DICOM files. This service was designed to 1) consistently monitor the data access requests from EcCk programs, 2) translate the requests for ARIA daemon services to obtain dose and structure DICOM files, and 3) monitor the process and return the obtained DICOM files back to EcCk programs for plan quality check purposes. Results: EcCk, which was previously designed to only support MOSAIQ TMS and Pinnacle TPS, can now support Varian ARIA and Eclipse. The new EcCk software has been tested and worked well in physics new start plan check, IMRT plan integrity and plan quality checks. Conclusion: Methods and computer programs have been implemented to allow EcCk to support Varian ARIA and Eclipse systems. This project was supported by a research grant from Varian Medical System.

60 APPLIED LIFE SCIENCES↗

Vegetation Warming Experiment: Leaf Mass Area, Leaf Carbon and Nitrogen Content, Utqiagvik (Barrow), Alaska, 2017

Leaf mass per area (LMA), leaf carbon and nitrogen content of vegetation (Petasites frigidus) within warming chambers and paired control plots. See related datasets for plant physiology, phenology and environmental conditions. The files included in this data package are in .csv format, and include 2 data files and 4 metadata files.These data were collected in 2017 as part of a series of single-season warming experiments on tundra vegetation on the Barrow Environmental Observatory (BEO), Utqiagvik, Alaska. A different plant species was targeted each year, over four experimental years from 2017–2021. Each year, five warming chambers and paired ambient control plots were deployed from around the time of snowmelt in mid-June through to mid-September. Average seasonal warming of 3–4°C was achieved using Zero Power Warming (ZPW) chambers (Lewin et al, 2017). The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

Validation of FSP Reactor Design with Sensitivity Studies of Beryllium-Reflected Critical Assemblies

The baseline design for space nuclear power is a fission surface power (FSP) system: sodium-potassium (NaK) cooled, fast spectrum reactor with highly-enriched-uranium (HEU)-O 2 fuel, stainless steel (SS) cladding, and beryllium reflectors with B4C control drums. Previous studies were performed to evaluate modeling capabilities and quantify uncertainties and biases associated with analysis methods and nuclear data. Comparison of Zero Power Plutonium Reactor (ZPPR)-20 benchmark experiments with the FSP design indicated that further reduction of the total design model uncertainty requires the reduction in uncertainties pertaining to beryllium and uranium cross-section data. Further comparison with three beryllium-reflected HEU-metal benchmark experiments performed at the Oak Ridge Critical Experiments Facility (ORCEF) concluded the requirement that experimental validation data have similar cross section sensitivities to those found in the FSP design. A series of critical experiments was performed at ORCEF in the 1960s to support the Medium Power Reactor Experiment (MPRE) space reactor design. The small, compact critical assembly (SCCA) experiments were graphite- or beryllium-reflected assemblies of SS-clad, HEU-O 2 fuel on a vertical lift machine. All five configurations were evaluated as benchmarks. Two of the five configurations were beryllium reflected, and further evaluated using the sensitivity and uncertainty analysis capabilities of SCALE 6.1. Validation of the example FSP design model was successful in reducing the primary uncertainty constituent, the Be(n,n) reaction, from 0.28 %$\delta$k/k to 0.0004 %$\delta$k/k. Further assessment of additional reactor physics measurements performed on the SCCA experiments may serve to further validate FSP design and operation.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Probabilistic estimation of depth-resolved profiles of soil thermal diffusivity from temperature time series: Supporting Data

This dataset consists of soil temperature time series that were used to estimate soil thermal diffusivity and its uncertainty trough the probabilistic modelling approach developed and presented in the article named "Probabilistic estimation of depth-resolved profiles of soil thermal diffusivity from temperature time series" and published in Earth Surface Dynamics. There are two compressed (.zip) files that contains synthetic (Synthetic_soiltemp_Teller.zip) and field (Field_soiltemp_Teller.zip) data. There is one MATLAB file that requires MATLAB to execute but any text editor can open it. The Synthetic_soiltemp_Teller.zip file includes 5 comma-delimited data files (.csv) each of which contains soil temperature time series generated through forward modeling (i.e., heat-conduction process in a heterogeneous medium using an explicit finite difference method) to mimic various types of temperature gradients, trend and fluctuations. These synthetic soil temperatures were used to investigate the impact of different environmental conditions on the uncertainty of thermal diffusivity estimates. The Field_soiltemp_Teller.zip file contains 28 comma-delimited data files (.csv) out of which (a) 27 files includes soil temperature time series recorded from 27 temperature probes located in a site along Teller Road about 40 km northwest of Nome, Alaska (64.72°N, 165.94°W), (b) one includes the name and coordinates of the 27 probes. These field soil temperatures were used to infer soil thermal diffusivity at numerous locations and depths in a discontinuous permafrost environment, and to evaluate the links between the estimated soil thermal diffusivity values and soil physical properties. The comma-delimited data files (.csv) of the synthetic and field soil temperature time series includes date and time (UTC) in the first column and soil temperature from 5 cm below the ground surface to 1.05 m depth (with 5 or 10 cm spacing between sensors) in the other columns. The measurements were acquired every 15 minutes. The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

TDCOSMO. X. Automated modeling of nine strongly lensed quasars and comparison between lens-modeling software

When strong gravitational lenses are to be used as an astrophysical or cosmological probe, models of their mass distributions are often needed. We present a new, time-efficient automation code for the uniform modeling of strongly lensed quasars with GLEE, a lens-modeling software for multiband data. By using the observed positions of the lensed quasars and the spatially extended surface brightness distribution of the host galaxy of the lensed quasar, we obtain a model of the mass distribution of the lens galaxy. We applied this uniform modeling pipeline to a sample of nine strongly lensed quasars for which images were obtained with the Wide Field Camera 3 of the Hubble Space Telescope. The models show well-reconstructed light components and a good alignment between mass and light centroids in most cases. We find that the automated modeling code significantly reduces the input time during the modeling process for the user. The time for preparing the required input files is reduced by a factor of 3 from ~3 h to about one hour. The active input time during the modeling process for the user is reduced by a factor of 10 from ~ 10 h to about one hour per lens system. This automated uniform modeling pipeline can efficiently produce uniform models of extensive lens-system samples that can be used for further cosmological analysis. A blind test that compared our results with those of an independent automated modeling pipeline based on the modeling software Lenstronomy revealed important lessons. Quantities such as Einstein radius, astrometry, mass flattening, and position angle are generally robustly determined. Other quantities, such as the radial slope of the mass density profile and predicted time delays, depend crucially on the quality of the data and on the accuracy with which the point spread function is reconstructed. Better data and/or a more detailed analysis are necessary to elevate our automated models to cosmography grade. Nevertheless, our pipeline enables the quick selection of lenses for follow-up and further modeling, which significantly speeds up the construction of cosmography-grade models. This important step forward will help us to take advantage of the increase in the number of lenses that is expected in the coming decade, which is an increase of several orders of magnitude.

79 ASTRONOMY AND ASTROPHYSICS↗

Simple Ontology Format (SOFT)

Simple Ontology Format (SOFT) library and file format specification provides a set of simple tools for developing and maintaining ontologies. The library, implemented as a perl module, supports parsing and verification of the files in SOFt format, operations with ontologies (adding, removing, or filtering of entities), and converting of ontologies into other formats. SOFT allows users to quickly create ontologies using only a basic text editor, verify it, and portray it in a graph layout system using customized styles.

Sorokine, Alexandre↗